Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G05410 Arabidopsis thaliana HOM05D005639 ORTHO05D007234 2.0e-225 785.8 462 100.0
AL6G49000 Arabidopsis lyrata HOM05D005639 ORTHO05D007234 3.9e-205 718.4 462 89.2
Carub.0006s3332 Capsella rubella HOM05D005639 ORTHO05D007234 1.5e-204 716.5 462 83.3
CARHR252170 Cardamine hirsuta HOM05D005639 ORTHO05D007234 4.5e-193 678.3 463 84.4
Thhalv10028589m.g Eutrema salsugineum HOM05D005639 ORTHO05D007234 2.1e-179 632.9 465 79.1
Sp6g03680 Schrenkiella parvula HOM05D005639 ORTHO05D007234 1.7e-176 623.2 466 81.5
A03p30310 Brassica napus HOM05D005639 ORTHO05D007234 5.5e-175 618.2 463 83.4
C03p36580 Brassica napus HOM05D005639 ORTHO05D007234 7.9e-174 614.4 463 83.4
BraA09t38117Z Brassica rapa HOM05D005639 ORTHO05D007234 2.8e-171 605.9 464 78.4
C09p32350 Brassica napus HOM05D005639 ORTHO05D007234 6.3e-171 604.7 464 78.2
BolC9t56080H Brassica oleracea HOM05D005639 ORTHO05D007234 5.3e-170 601.7 464 77.4
BolC3t15973H Brassica oleracea HOM05D005639 ORTHO05D007234 1.9e-167 593.2 466 80.3
BcaC01g06663 Brassica carinata HOM05D005639 ORTHO05D007234 4.6e-166 588.6 464 80.2
A09p25350 Brassica napus HOM05D005639 ORTHO05D007234 7.9e-166 587.8 464 76.9
BraA03t12214Z Brassica rapa HOM05D005639 ORTHO05D007234 1.0e-165 587.4 464 79.7
Aa31LG9G9170 Aethionema arabicum HOM05D005639 ORTHO05D007234 4.1e-162 575.5 442 77.1
BcaB01g02559 Brassica carinata HOM05D005639 ORTHO05D007234 1.3e-160 570.5 464 75.0
THA.LOC104812393 Tarenaya hassleriana HOM05D005639 ORTHO05D007234 3.1e-146 522.7 438 67.4
THA.LOC104806253 Tarenaya hassleriana HOM05D005639 ORTHO05D007234 1.3e-144 517.3 435 66.4
AT4G21130 Arabidopsis thaliana HOM05D005639 ORTHO05D007234 2.8e-139 499.6 465 58.7
Cpa.g.sc19.212 Carica papaya HOM05D005639 ORTHO05D007234 6.3e-131 471.9 483 59.8
Prupe.4G089600 Prunus persica HOM05D005639 ORTHO05D007234 6.3e-131 471.9 478 59.8
Sed0027243 Sechium edule HOM05D005639 ORTHO05D007234 6.3e-131 471.9 481 60.7
Nn5g27628 Nelumbo nucifera HOM05D005639 ORTHO05D007234 1.8e-130 470.3 476 59.0
GSVIVG01021618001 Vitis vinifera HOM05D005639 ORTHO05D007234 7.0e-130 468.4 463 59.2
TWI73G0023 Tripterygium wilfordii HOM05D005639 ORTHO05D007234 9.2e-130 468.0 479 59.9
Atru.chr10.888 Acer truncatum HOM05D005639 ORTHO05D007234 1.2e-129 467.6 480 59.8
AL7G32990 Arabidopsis lyrata HOM05D005639 ORTHO05D007234 2.3e-128 463.4 465 57.2
Sed0017304 Sechium edule HOM05D005639 ORTHO05D007234 3.8e-128 462.6 474 58.0
Migut.H01334 Erythranthe guttata HOM05D005639 ORTHO05D007234 6.6e-128 461.8 384 66.4
Lalb_Chr18g0057911 Lupinus albus HOM05D005639 ORTHO05D007234 8.6e-128 461.5 387 66.4
MSTRG.13266 Avicennia marina HOM05D005639 ORTHO05D007234 1.1e-127 461.1 475 60.2
TWI09G1293 Tripterygium wilfordii HOM05D005639 ORTHO05D007234 1.1e-127 461.1 386 65.3
CsaV3_5G039540 Cucumis sativus L. HOM05D005639 ORTHO05D007234 1.5e-127 460.7 479 58.5
Rhsim13G0120200 Rhododendron simsii HOM05D005639 ORTHO05D007234 2.5e-127 459.9 386 65.8
Cfa016817 Carpinus fangiana HOM05D005639 ORTHO05D007234 4.3e-127 459.1 479 58.9
MD10G1254000 Malus domestica HOM05D005639 ORTHO05D007234 2.1e-126 456.8 477 57.2
Ciclev10014949m.g Citrus clementina HOM05D005639 ORTHO05D007234 3.6e-126 456.1 385 65.2
ClCG08G001610 Citrullus lanatus HOM05D005639 ORTHO05D007234 6.1e-126 455.3 465 60.0
Cc09_g08220 Coffea canephora HOM05D005639 ORTHO05D007234 1.8e-125 453.8 383 64.2
vmacro03396 Vaccinium macrocarpon HOM05D005639 ORTHO05D007234 1.8e-125 453.8 386 65.3
Eucgr.D00190 Eucalyptus grandis HOM05D005639 ORTHO05D007234 3.0e-125 453.0 470 58.9
Hma1.2p1_0333F.1_g128320 Hydrangea macrophylla HOM05D005639 ORTHO05D007234 5.2e-125 452.2 385 65.2
Lj6g0009484 Lotus japonicus HOM05D005639 ORTHO05D007234 1.2e-124 451.1 478 61.1
Actinidia36001 Actinidia chinensis HOM05D005639 ORTHO05D007234 2.6e-124 449.9 387 63.8
Haze_19855 Corylus avellana HOM05D005639 ORTHO05D007234 2.6e-124 449.9 499 57.3
HanXRQChr17g0569471 Helianthus annuus HOM05D005639 ORTHO05D007234 3.4e-124 449.5 384 64.8
CSS0044875 Camellia sinensis var. sinensis HOM05D005639 ORTHO05D007234 5.7e-124 448.7 387 62.8
ECA234G3170 Erigeron canadensis HOM05D005639 ORTHO05D007234 5.7e-124 448.7 385 62.3
DCAR_003859 Daucus carota HOM05D005639 ORTHO05D007234 7.5e-124 448.4 474 57.2
PGR083G2688 Punica granatum HOM05D005639 ORTHO05D007234 7.5e-124 448.4 472 58.7
Lsat_1_v5_gn_4_3900 Lactuca sativa HOM05D005639 ORTHO05D007234 9.8e-124 448.0 477 56.8
RcHm_v2.0_Chr5g0015871 Rosa chinensis HOM05D005639 ORTHO05D007234 1.3e-123 447.6 382 64.9
Peaxi162Scf00670g00332 Petunia axillaris HOM05D005639 ORTHO05D007234 2.9e-123 446.4 383 63.7
Potri.005G061000 Populus trichocarpa HOM05D005639 ORTHO05D007234 3.7e-123 446.0 374 66.8
Dinv03058 Davidia involucrata HOM05D005639 ORTHO05D007234 4.9e-123 445.7 386 64.2
MD05G1274300 Malus domestica HOM05D005639 ORTHO05D007234 4.9e-123 445.7 385 64.7
FAN21G2832 Fragaria x ananassa HOM05D005639 ORTHO05D007234 8.3e-123 444.9 381 64.6
SGA_v2.0_scaffold106G30666 Striga asiatica HOM05D005639 ORTHO05D007234 8.3e-123 444.9 384 64.8
Sabra05G0051400 Salix brachista HOM05D005639 ORTHO05D007234 1.1e-122 444.5 374 65.0
FvH4_3g09990 Fragaria vesca HOM05D005639 ORTHO05D007234 1.4e-122 444.1 474 58.4
Nitab4.5_0002719g0080 Nicotiana tabacum HOM05D005639 ORTHO05D007234 7.0e-122 441.8 383 62.1
FAN25G3670 Fragaria x ananassa HOM05D005639 ORTHO05D007234 9.2e-122 441.4 460 59.8
FAN16G1271 Fragaria x ananassa HOM05D005639 ORTHO05D007234 1.2e-121 441.0 389 57.3
Hund22392 Selenicereus undatus HOM05D005639 ORTHO05D007234 1.2e-121 441.0 383 64.0
Potri.007G107900 Populus trichocarpa HOM05D005639 ORTHO05D007234 2.0e-121 440.3 374 65.8
Nitab4.5_0004077g0020 Nicotiana tabacum HOM05D005639 ORTHO05D007234 3.5e-121 439.5 383 61.9
SalBow7G3138 Salvia bowleyana HOM05D005639 ORTHO05D007234 5.9e-121 438.7 427 59.0
VMungo0540G0794 Vigna mungo HOM05D005639 ORTHO05D007234 1.0e-120 438.0 475 56.6
Dinv01990 Davidia involucrata HOM05D005639 ORTHO05D007234 1.3e-120 437.6 464 59.9
CiPaw.04G138400 Carya illinoinensis HOM05D005639 ORTHO05D007234 3.9e-120 436.0 478 56.5
Thecc.06G000900 Theobroma cacao HOM05D005639 ORTHO05D007234 3.9e-120 436.0 473 55.6
Sc24g0001380 Simmondsia chinensis HOM05D005639 ORTHO05D007234 2.5e-119 433.3 387 61.5
PGSC0003DMG402021193 Solanum tuberosum HOM05D005639 ORTHO05D007234 3.3e-119 433.0 380 61.8
Phvul.006G129100 Phaseolus vulgaris HOM05D005639 ORTHO05D007234 5.6e-119 432.2 476 57.1
MELO3C022131.2 Cucumis melo HOM05D005639 ORTHO05D007234 7.3e-119 431.8 453 57.2
Aqoxy1G01607 Aquilegia oxysepala HOM05D005639 ORTHO05D007234 1.2e-118 431.0 383 61.6
COL.COLO4_26825 Corchorus olitorius HOM05D005639 ORTHO05D007234 1.6e-118 430.6 473 54.3
Gorai.005G118400 Gossypium raimondii HOM05D005639 ORTHO05D007234 6.2e-118 428.7 474 54.6
Solyc02g069770.3 Solanum lycopersicum HOM05D005639 ORTHO05D007234 1.0e-117 427.9 380 61.3
Sopen02g018930 Solanum pennellii HOM05D005639 ORTHO05D007234 1.4e-117 427.6 380 61.1
TAR626G0701 Trochodendron aralioides HOM05D005639 ORTHO05D007234 3.1e-117 426.4 370 64.6
Sabra07G0088400 Salix brachista HOM05D005639 ORTHO05D007234 5.2e-117 425.6 374 63.6
Ca_00807_v3 Cicer arietinum L. HOM05D005639 ORTHO05D007234 6.8e-117 425.2 385 61.8
Manes.13G081200 Manihot esculenta HOM05D005639 ORTHO05D007234 6.8e-117 425.2 468 60.5
QL03p009300 Quercus lobata HOM05D005639 ORTHO05D007234 8.9e-117 424.9 570 46.0
Medtr2g029940 Medicago truncatula HOM05D005639 ORTHO05D007234 1.2e-116 424.5 387 61.5
Gohir.D02G104300 Gossypium hirsutum HOM05D005639 ORTHO05D007234 1.5e-116 424.1 474 54.0
Glyma.09G023100 Glycine max HOM05D005639 ORTHO05D007234 3.4e-116 422.9 384 61.7
Psat1g168120 Pisum sativum HOM05D005639 ORTHO05D007234 3.4e-116 422.9 478 57.5
Gohir.A02G094000 Gossypium hirsutum HOM05D005639 ORTHO05D007234 9.8e-116 421.4 474 53.8
arahy.Tifrunner.gnm1.ann1.JS3IU7 Arachis hypogaea HOM05D005639 ORTHO05D007234 3.7e-115 419.5 472 55.7
HPP92_013994 Vanilla planifolia HOM05D005639 ORTHO05D007234 1.9e-114 417.2 477 53.0
ATR0165G031 Amborella trichopoda HOM05D005639 ORTHO05D007234 7.0e-114 415.2 383 60.6
CiPaw.02G032400 Carya illinoinensis HOM05D005639 ORTHO05D007234 7.0e-114 415.2 469 51.2
FAN11G3706 Fragaria x ananassa HOM05D005639 ORTHO05D007234 7.0e-114 415.2 481 52.8
PSO541G1457 Papaver somniferum HOM05D005639 ORTHO05D007234 7.0e-114 415.2 385 60.3
PSO675G8746 Papaver somniferum HOM05D005639 ORTHO05D007234 4.6e-113 412.5 446 57.2
Zm00001eb218720 Zea mays HOM05D005639 ORTHO05D007234 1.9e-111 407.1 470 53.8
Zm00001eb050650 Zea mays HOM05D005639 ORTHO05D007234 7.3e-111 405.2 380 59.7
Ah.14g085710 Amaranthus hybridus HOM05D005639 ORTHO05D007234 9.5e-111 404.8 480 51.5
arahy.Tifrunner.gnm1.ann1.MSHM5J Arachis hypogaea HOM05D005639 ORTHO05D007234 4.0e-109 399.4 515 51.1
Os03g0625900 Oryza sativa ssp. japonica HOM05D005639 ORTHO05D007234 8.9e-109 398.3 377 58.6
unitig_8.g4887 Utricularia gibba HOM05D005639 ORTHO05D007234 6.4e-107 392.1 461 56.0
EL10Ac4g08968 Beta vulgaris HOM05D005639 ORTHO05D007234 3.5e-105 386.3 356 61.0
AUR62033065 Chenopodium quinoa HOM05D005639 ORTHO05D007234 7.8e-105 385.2 396 52.3
CiPaw.10G033400 Carya illinoinensis HOM05D005639 ORTHO05D007234 2.5e-103 380.2 501 46.3
CDE05G0927 Ceratophyllum demersum HOM05D005639 ORTHO05D007234 2.9e-99 366.7 471 49.9
Oeu030450.1 Olea europaea HOM05D005639 ORTHO05D007234 8.6e-96 355.1 440 45.9
AagrBONN_evm.TU.Sc2ySwM_228.3905 Anthoceros agrestis HOM05D005639 ORTHO05D007234 1.9e-95 354.0 416 51.9
Mapoly0012s0170 Marchantia polymorpha HOM05D005639 ORTHO05D007234 1.4e-93 347.8 486 48.8
AUR62042204 Chenopodium quinoa HOM05D005639 ORTHO05D007234 1.1e-90 338.2 394 49.0
Pp3c13_22280 Physcomitrium patens HOM05D005639 ORTHO05D007234 3.1e-85 320.1 400 49.5
vmacro03440 Vaccinium macrocarpon HOM05D005639 ORTHO05D007234 4.0e-85 319.7 372 48.1
Pp3c15_1000 Physcomitrium patens HOM05D005639 ORTHO05D007234 2.0e-84 317.4 405 48.1
HanXRQChr13g0407861 Helianthus annuus HOM05D005639 ORTHO05D007234 1.2e-76 291.6 345 54.5
C06p38580 Brassica napus HOM05D005639 ORTHO05D007234 1.9e-74 284.3 267 57.7
CBR_g50978 Chara braunii HOM05D005639 ORTHO05D007234 2.3e-72 277.3 454 42.7
Glyma.15G129100 Glycine max HOM05D005639 ORTHO05D007234 6.9e-69 265.8 255 53.7
SMO146G0033 Selaginella moellendorffii HOM05D005639 ORTHO05D007234 2.2e-67 260.8 426 43.7
BolC6t38950H Brassica oleracea HOM05D005639 ORTHO05D007234 4.2e-66 256.5 249 56.6
MCO15G200 Micromonas commoda HOM05D005639 ORTHO05D007234 4.5e-60 236.5 413 36.1
Actinidia13477 Actinidia chinensis HOM05D005639 ORTHO05D007234 2.9e-51 207.2 149 64.4
Actinidia13478 Actinidia chinensis HOM05D005639 ORTHO05D007234 3.2e-50 203.8 186 55.4
PRCOL_00004480 Prasinoderma coloniale HOM05D005639 ORTHO05D007234 1.8e-48 198.0 473 35.9
Duzib235G0447 Durio zibethinus HOM05D005639 ORTHO05D007234 3.8e-43 180.3 226 42.9
Cre06.g278175 Chlamydomonas reinhardtii HOM05D005639 ORTHO05D007234 8.2e-38 162.5 389 30.3
BcaB01g02186 Brassica carinata HOM05D005639 ORTHO05D007234 5.0e-35 153.3 140 59.3
A08p03340 Brassica napus HOM05D005639 ORTHO05D001462 2.8e-30 137.5 114 64.9
BcaB07g31331 Brassica carinata HOM05D005639 ORTHO05D007234 8.2e-30 136.0 137 54.7
BcaC04g22046 Brassica carinata HOM05D001874 ORTHO05D002166 1.7e-27 128.3 91 71.4
C08p21980 Brassica napus HOM05D005639 ORTHO05D002166 2.7e-25 120.9 161 46.6
Cfa027057 Carpinus fangiana HOM05D005639 ORTHO05D007234 2.3e-24 117.9 542 24.7
A01p33050 Brassica napus HOM05D001874 ORTHO05D002166 2.8e-22 110.9 147 47.6
BcaB03g11915 Brassica carinata HOM05D005639 ORTHO05D007234 4.8e-22 110.2 140 45.7
BcaB06g25383 Brassica carinata HOM05D005639 ORTHO05D093847 5.9e-12 76.6 91 48.4


User provided reference genes

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