Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G00420 Arabidopsis thaliana HOM05D000399 ORTHO05D010012 5.6e-104 380.9 191 100.0
AL1G28000 Arabidopsis lyrata HOM05D000399 ORTHO05D010012 4.3e-80 301.6 192 82.3
Carub.0001s1565 Capsella rubella HOM05D000399 ORTHO05D010012 2.6e-61 239.2 177 70.6
CARHR016360 Cardamine hirsuta HOM05D000399 ORTHO05D010012 5.8e-53 211.5 166 65.1
Sp1g14150 Schrenkiella parvula HOM05D000399 ORTHO05D010012 2.1e-47 193.0 184 62.0
BraA06t24361Z Brassica rapa HOM05D002847 ORTHO05D003155 3.7e-39 165.6 192 52.6
C05p14090 Brassica napus HOM05D002847 ORTHO05D003155 1.4e-38 163.7 171 58.5
BolC5t30140H Brassica oleracea HOM05D002847 ORTHO05D003155 1.4e-38 163.7 172 57.6
A06p11910 Brassica napus HOM05D002847 ORTHO05D003155 1.8e-38 163.3 192 52.1
BcaC05g30483 Brassica carinata HOM05D000399 ORTHO05D010012 8.5e-36 154.5 163 56.4
Thhalv10009652m.g Eutrema salsugineum HOM05D000399 ORTHO05D010012 2.1e-34 149.8 101 71.3
THA.LOC104812446 Tarenaya hassleriana HOM05D000399 ORTHO05D010012 3.4e-29 132.5 193 44.0
THA.LOC104813580 Tarenaya hassleriana HOM05D000399 ORTHO05D010012 1.0e-28 131.0 171 46.8
Aa31LG7G440 Aethionema arabicum HOM05D000399 ORTHO05D010012 2.2e-28 129.8 109 58.7
CARHR073870 Cardamine hirsuta HOM05D000399 ORTHO05D010012 3.9e-25 119.0 180 42.2
A02p23280 Brassica napus HOM05D000399 ORTHO05D010012 8.8e-25 117.9 178 39.9
BcaC03g15940 Brassica carinata HOM05D000399 ORTHO05D010012 7.4e-24 114.8 165 40.6
BraA02t07324Z Brassica rapa HOM05D000399 ORTHO05D010012 7.4e-24 114.8 189 38.1
Aa31LG4G930 Aethionema arabicum HOM05D000399 ORTHO05D010012 1.3e-23 114.0 173 42.8
Thhalv10019137m.g Eutrema salsugineum HOM05D000399 ORTHO05D010012 1.3e-23 114.0 179 41.3
AL2G40790 Arabidopsis lyrata HOM05D000399 ORTHO05D010012 1.7e-23 113.6 136 47.8
C02p37020 Brassica napus HOM05D000399 ORTHO05D010012 2.2e-23 113.2 165 41.2
BolC2t09718H Brassica oleracea HOM05D000134 ORTHO05D002396 6.3e-23 111.7 176 38.6
BcaB05g25237 Brassica carinata HOM05D000399 ORTHO05D010012 2.4e-22 109.8 181 39.8
arahy.Tifrunner.gnm1.ann1.E6VFRG Arachis hypogaea HOM05D000399 ORTHO05D010012 3.1e-22 109.4 93 51.6
Sp5g35110 Schrenkiella parvula HOM05D000399 ORTHO05D010012 4.5e-21 105.5 201 39.3
Gohir.A09G091200 Gossypium hirsutum HOM05D000399 ORTHO05D010012 7.7e-21 104.8 125 44.0
Carub.0002s2691 Capsella rubella HOM05D000399 ORTHO05D010012 1.7e-20 103.6 213 33.3
Duzib235G0300 Durio zibethinus HOM05D000399 ORTHO05D010012 2.2e-20 103.2 88 55.7
QL05p034335 Quercus lobata HOM05D000399 ORTHO05D010012 2.9e-20 102.8 97 53.6
Eucgr.J03093 Eucalyptus grandis HOM05D000399 ORTHO05D010012 3.8e-20 102.4 93 51.6
Prupe.3G095800 Prunus persica HOM05D000399 ORTHO05D010012 6.5e-20 101.7 93 58.1
Duzib160G0247 Durio zibethinus HOM05D000399 ORTHO05D010012 8.5e-20 101.3 141 44.7
Gorai.006G107400 Gossypium raimondii HOM05D000399 ORTHO05D010012 8.5e-20 101.3 125 42.4
Thecc.06G038100 Theobroma cacao HOM05D000399 ORTHO05D010012 2.5e-19 99.8 88 55.7
COL.COLO4_26655 Corchorus olitorius HOM05D000399 ORTHO05D010012 3.2e-19 99.4 92 52.2
BolC6t40403H Brassica oleracea HOM05D000134 ORTHO05D002396 4.2e-19 99.0 85 55.3
Nitab4.5_0001454g0050 Nicotiana tabacum HOM05D000399 ORTHO05D010012 5.5e-19 98.6 86 55.8
Atru.chr7.191 Acer truncatum HOM05D000399 ORTHO05D000304 7.2e-19 98.2 96 52.1
Cfa001902 Carpinus fangiana HOM05D000399 ORTHO05D010012 1.6e-18 97.1 99 51.5
ClCG07G012380 Citrullus lanatus HOM05D000399 ORTHO05D010012 1.6e-18 97.1 90 53.3
Ciclev10026528m.g Citrus clementina HOM05D000399 ORTHO05D010012 2.1e-18 96.7 99 50.5
CAN.G407.44 Capsicum annuum HOM05D000399 ORTHO05D010012 3.6e-18 95.9 126 45.2
Cpa.g.sc10.115 Carica papaya HOM05D000399 ORTHO05D010012 4.7e-18 95.5 95 51.6
Nn8g39754 Nelumbo nucifera HOM05D000399 ORTHO05D000304 8.0e-18 94.7 94 51.1
CiPaw.15G178900 Carya illinoinensis HOM05D000399 ORTHO05D000304 1.8e-17 93.6 90 50.0
Hma1.2p1_0135F.1_g061800 Hydrangea macrophylla HOM05D000399 ORTHO05D010012 1.8e-17 93.6 92 51.1
MD15G1157600 Malus domestica HOM05D000399 ORTHO05D000304 1.8e-17 93.6 130 39.2
Aqoxy7G03507 Aquilegia oxysepala HOM05D000399 ORTHO05D000304 2.3e-17 93.2 78 56.4
Dinv23308 Davidia involucrata HOM05D007028 ORTHO05D010012 3.0e-17 92.8 81 55.6
MELO3C017858.2 Cucumis melo HOM05D000399 ORTHO05D010012 4.0e-17 92.4 87 49.4
Manes.04G105300 Manihot esculenta HOM05D000399 ORTHO05D010012 5.2e-17 92.0 84 52.4
Potri.003G179700 Populus trichocarpa HOM05D000399 ORTHO05D010012 1.2e-16 90.9 81 56.8
vmacro19037 Vaccinium macrocarpon HOM05D000399 ORTHO05D010012 1.2e-16 90.9 77 53.2
Actinidia25445 Actinidia chinensis HOM05D007028 ORTHO05D010012 1.5e-16 90.5 83 44.6
Haze_19295 Corylus avellana HOM05D000399 ORTHO05D000304 1.5e-16 90.5 113 42.5
CsaV3_4G001760 Cucumis sativus L. HOM05D000399 ORTHO05D010012 1.5e-16 90.5 92 47.8
Sed0016429 Sechium edule HOM05D000399 ORTHO05D010012 1.5e-16 90.5 90 50.0
Prupe.7G252800 Prunus persica HOM05D000399 ORTHO05D000304 2.0e-16 90.1 85 48.2
Duzib168G1954 Durio zibethinus HOM05D000399 ORTHO05D000304 2.6e-16 89.7 86 50.0
AUR62042026 Chenopodium quinoa HOM05D000399 ORTHO05D008498 3.3e-16 89.4 112 46.4
MELO3C010254.2 Cucumis melo HOM05D000399 ORTHO05D000304 3.3e-16 89.4 88 48.9
Gohir.A05G049800 Gossypium hirsutum HOM05D000399 ORTHO05D000304 3.3e-16 89.4 116 41.4
Manes.11G064002 Manihot esculenta HOM05D000399 ORTHO05D010012 3.3e-16 89.4 99 46.5
Rhsim01G0049100 Rhododendron simsii HOM05D000399 ORTHO05D000304 3.3e-16 89.4 85 52.9
Dinv42901 Davidia involucrata HOM05D000399 ORTHO05D000304 5.7e-16 88.6 85 52.9
Dinv43200 Davidia involucrata HOM05D000399 ORTHO05D000304 5.7e-16 88.6 85 52.9
TPR.G19174 Trifolium pratense HOM05D000399 ORTHO05D010012 5.7e-16 88.6 146 34.2
AUR62011271 Chenopodium quinoa HOM05D000399 ORTHO05D000304 7.5e-16 88.2 83 54.2
Ca_01025_v3 Cicer arietinum L. HOM05D000263 ORTHO05D000213 7.5e-16 88.2 125 36.8
CsaV3_1G028590 Cucumis sativus L. HOM05D000399 ORTHO05D000304 7.5e-16 88.2 92 48.9
vmacro21876 Vaccinium macrocarpon HOM05D000399 ORTHO05D000304 7.5e-16 88.2 85 49.4
Actinidia18233 Actinidia chinensis HOM05D000399 ORTHO05D010012 9.7e-16 87.8 80 46.2
Lsat_1_v5_gn_5_90720 Lactuca sativa HOM05D000399 ORTHO05D000304 9.7e-16 87.8 104 45.2
PGR142G0104 Punica granatum HOM05D000399 ORTHO05D000304 9.7e-16 87.8 109 42.2
EL10Ac8g18832 Beta vulgaris HOM05D000399 ORTHO05D000304 1.3e-15 87.4 83 49.4
EL10Ac8g18834 Beta vulgaris HOM05D000399 ORTHO05D000304 1.3e-15 87.4 83 49.4
Gohir.D05G051600 Gossypium hirsutum HOM05D000399 ORTHO05D000304 1.3e-15 87.4 86 50.0
Gorai.009G053300 Gossypium raimondii HOM05D000399 ORTHO05D000304 1.3e-15 87.4 86 50.0
Hma1.2p1_0182F.1_g080650 Hydrangea macrophylla HOM05D000399 ORTHO05D000304 1.7e-15 87.0 161 35.4
Phvul.005G180800 Phaseolus vulgaris HOM05D000399 ORTHO05D010012 1.7e-15 87.0 184 32.6
Thecc.09G036900 Theobroma cacao HOM05D000399 ORTHO05D000304 1.7e-15 87.0 86 48.8
EL10Ac8g18835 Beta vulgaris HOM05D000399 ORTHO05D000304 2.2e-15 86.7 83 49.4
HanXRQChr12g0356941 Helianthus annuus HOM05D000399 ORTHO05D000304 2.2e-15 86.7 83 53.0
Sopen07g001140 Solanum pennellii HOM05D000399 ORTHO05D000304 2.8e-15 86.3 87 51.7
TWI18G0904 Tripterygium wilfordii HOM05D000399 ORTHO05D010012 2.8e-15 86.3 88 52.3
Solyc07g005030.4 Solanum lycopersicum HOM05D000399 ORTHO05D000304 3.7e-15 85.9 87 51.7
Sed0002244 Sechium edule HOM05D000399 ORTHO05D000304 4.8e-15 85.5 110 41.8
SGA_v2.0_scaffold5G02750 Striga asiatica HOM05D000399 ORTHO05D010012 4.8e-15 85.5 104 44.2
ECA234G3390 Erigeron canadensis HOM05D000399 ORTHO05D000304 6.3e-15 85.1 147 33.3
Sabra06G0144400 Salix brachista HOM05D000399 ORTHO05D000304 6.3e-15 85.1 81 54.3
Eucgr.C00406 Eucalyptus grandis HOM05D000399 ORTHO05D000304 8.2e-15 84.7 83 53.0
PGR031G2642 Punica granatum HOM05D000399 ORTHO05D010012 1.1e-14 84.3 95 45.3
QL02p091746 Quercus lobata HOM05D000399 ORTHO05D010012 1.1e-14 84.3 108 42.6
CANSAT11G2053 Cannabis sativa HOM05D000399 ORTHO05D000304 1.4e-14 84.0 87 49.4
PSO832G3766 Papaver somniferum HOM05D000399 ORTHO05D000304 1.4e-14 84.0 87 47.1
Zm00001eb426330 Zea mays HOM05D000399 ORTHO05D000304 1.8e-14 83.6 88 45.5
HPP92_005311 Vanilla planifolia HOM05D000399 ORTHO05D000304 2.4e-14 83.2 161 36.0
Os09g0416500 Oryza sativa ssp. japonica HOM05D000399 ORTHO05D010012 3.1e-14 82.8 84 42.9
Ah.09g226570 Amaranthus hybridus HOM05D000399 ORTHO05D000304 5.3e-14 82.0 88 45.5
CAN.G520.37 Capsicum annuum HOM05D000399 ORTHO05D000304 5.3e-14 82.0 85 49.4
Potri.006G188800 Populus trichocarpa HOM05D000399 ORTHO05D000304 5.3e-14 82.0 81 50.6
TAR626G0740 Trochodendron aralioides HOM05D007151 ORTHO05D009056 5.3e-14 82.0 104 46.2
Glyma.15G004500 Glycine max HOM05D000399 ORTHO05D010012 7.0e-14 81.6 127 41.7
HanXRQChr16g0500081 Helianthus annuus HOM05D000399 ORTHO05D010012 7.0e-14 81.6 82 46.3
Psat5g304480 Pisum sativum HOM05D000399 ORTHO05D010012 9.1e-14 81.3 96 41.7
Sopen03g036060 Solanum pennellii HOM05D000399 ORTHO05D010012 9.1e-14 81.3 99 46.5
CSS0007492 Camellia sinensis var. sinensis HOM05D000399 ORTHO05D000304 1.2e-13 80.9 93 46.2
GSVIVG01001045001 Vitis vinifera HOM05D000399 ORTHO05D000304 1.2e-13 80.9 86 44.2
Lj7C452G5 Lonicera japonica HOM05D000399 ORTHO05D000304 1.6e-13 80.5 165 36.4
Medtr4g116860 Medicago truncatula HOM05D000399 ORTHO05D000304 1.6e-13 80.5 81 48.1
Phvul.003G175700 Phaseolus vulgaris HOM05D000399 ORTHO05D000304 1.6e-13 80.5 81 53.1
VMungo1080G1791 Vigna mungo HOM05D000399 ORTHO05D010012 1.6e-13 80.5 163 35.6
Actinidia38350 Actinidia chinensis HOM05D000399 ORTHO05D000304 2.0e-13 80.1 94 42.6
CSS0047995 Camellia sinensis var. sinensis HOM05D000399 ORTHO05D000304 2.0e-13 80.1 83 49.4
Nitab4.5_0004050g0010 Nicotiana tabacum HOM05D000399 ORTHO05D000304 2.0e-13 80.1 81 53.1
MSTRG.10632 Avicennia marina HOM05D000399 ORTHO05D000304 2.7e-13 79.7 85 48.2
Cpa.g.sc12.176 Carica papaya HOM05D000399 ORTHO05D010012 2.7e-13 79.7 173 32.4
Glyma.17G104100 Glycine max HOM05D000399 ORTHO05D000304 2.7e-13 79.7 81 51.9
Nitab4.5_0000416g0080 Nicotiana tabacum HOM05D000399 ORTHO05D000304 2.7e-13 79.7 81 53.1
RcHm_v2.0_Chr2g0086421 Rosa chinensis HOM05D000399 ORTHO05D000304 3.5e-13 79.3 88 46.6
Lj9C711G9 Lonicera japonica HOM05D000399 ORTHO05D000304 4.5e-13 79.0 81 50.6
Peaxi162Scf00347g00328 Petunia axillaris HOM05D000399 ORTHO05D000304 4.5e-13 79.0 85 49.4
FAN15G2526 Fragaria x ananassa HOM05D032538 ORTHO05D010012 5.9e-13 78.6 80 50.0
Glyma.13G156500 Glycine max HOM05D000399 ORTHO05D000304 5.9e-13 78.6 81 50.6
FAN23G2096 Fragaria x ananassa HOM05D000399 ORTHO05D000304 7.7e-13 78.2 90 46.7
Lsat_1_v5_gn_4_85921 Lactuca sativa HOM05D000399 ORTHO05D010012 7.7e-13 78.2 83 48.2
TPR.G15773 Trifolium pratense HOM05D000399 ORTHO05D000304 1.0e-12 77.8 87 46.0
arahy.Tifrunner.gnm1.ann1.M5ZY6N Arachis hypogaea HOM05D000399 ORTHO05D000304 1.3e-12 77.4 85 45.9
Ciclev10007241m.g Citrus clementina HOM05D000399 ORTHO05D000304 1.3e-12 77.4 140 37.9
Migut.K00362 Erythranthe guttata HOM05D000399 ORTHO05D000304 1.7e-12 77.0 81 50.6
MSTRG.19631 Avicennia marina HOM05D000399 ORTHO05D000304 2.2e-12 76.6 84 47.6
Cc06_g07320 Coffea canephora HOM05D000399 ORTHO05D000304 2.2e-12 76.6 81 46.9
Lalb_Chr12g0198551 Lupinus albus HOM05D000399 ORTHO05D000304 2.2e-12 76.6 83 48.2
BraA10t44037Z Brassica rapa HOM05D000399 ORTHO05D000304 2.9e-12 76.3 134 32.8
arahy.Tifrunner.gnm1.ann1.ZFL6Z0 Arachis hypogaea HOM05D000399 ORTHO05D000304 3.8e-12 75.9 86 43.0
Ca_21605_v3 Cicer arietinum L. HOM05D000399 ORTHO05D000304 3.8e-12 75.9 87 43.7
FAN19G1338 Fragaria x ananassa HOM05D000399 ORTHO05D000304 3.8e-12 75.9 81 46.9
Zm00001eb312740 Zea mays HOM05D000399 ORTHO05D010012 3.8e-12 75.9 82 45.1
ATR0629G135 Amborella trichopoda HOM05D000399 ORTHO05D000304 5.0e-12 75.5 111 37.8
A10p19620 Brassica napus HOM05D000399 ORTHO05D000304 5.0e-12 75.5 134 33.6
BolC9t58455H Brassica oleracea HOM05D000399 ORTHO05D000304 5.0e-12 75.5 134 33.6
Thhalv10012426m.g Eutrema salsugineum HOM05D000399 ORTHO05D000304 5.0e-12 75.5 136 37.5
SGA_v2.0_scaffold183G39849 Striga asiatica HOM05D000399 ORTHO05D000304 6.5e-12 75.1 83 44.6
C09p55870 Brassica napus HOM05D000399 ORTHO05D000304 8.5e-12 74.7 134 33.6
VMungo1215G2463 Vigna mungo HOM05D000399 ORTHO05D000304 1.1e-11 74.3 136 38.2
BcaB08g36493 Brassica carinata HOM05D000399 ORTHO05D000304 1.5e-11 73.9 135 35.6
Cfa020868 Carpinus fangiana HOM05D000399 ORTHO05D008498 1.5e-11 73.9 100 41.0
Lj4g0019891 Lotus japonicus HOM05D000399 ORTHO05D000304 1.9e-11 73.6 111 41.4
Sp6g24100 Schrenkiella parvula HOM05D000399 ORTHO05D000304 1.9e-11 73.6 136 36.8
Psat4g034160 Pisum sativum HOM05D000399 ORTHO05D000304 2.5e-11 73.2 138 35.5
Sc08g0005100 Simmondsia chinensis HOM05D000399 ORTHO05D010012 2.5e-11 73.2 104 38.5
FAN28G2728 Fragaria x ananassa HOM05D000399 ORTHO05D000304 5.5e-11 72.0 153 30.7
Lj3g0003967 Lotus japonicus HOM05D000399 ORTHO05D010012 7.2e-11 71.6 96 40.6
Hund21616 Selenicereus undatus HOM05D000399 ORTHO05D000304 7.2e-11 71.6 107 39.3
Os04g0509300 Oryza sativa ssp. japonica HOM05D000399 ORTHO05D000304 9.4e-11 71.2 86 43.0
Aa31LG1G14290 Aethionema arabicum HOM05D000399 ORTHO05D000304 1.6e-10 70.5 103 39.8
CDE08G0493 Ceratophyllum demersum HOM05D000399 ORTHO05D000304 1.6e-10 70.5 83 44.6
ECA232G1568 Erigeron canadensis HOM05D000399 ORTHO05D010012 2.1e-10 70.1 85 43.5
THA.LOC104811019 Tarenaya hassleriana HOM05D000399 ORTHO05D000304 2.1e-10 70.1 96 41.7
FvH4_1g01480 Fragaria vesca HOM05D000399 ORTHO05D000304 2.7e-10 69.7 153 30.7
SalBow1G6743 Salvia bowleyana HOM05D000399 ORTHO05D000304 3.6e-10 69.3 130 36.9
AT5G20320 Arabidopsis thaliana HOM05D000399 ORTHO05D000304 1.0e-09 67.8 81 45.7
MD17G1220100 Malus domestica HOM05D000399 ORTHO05D010012 1.0e-09 67.8 54 61.1
AL6G31870 Arabidopsis lyrata HOM05D000399 ORTHO05D000304 1.8e-09 67.0 81 45.7
Carub.0006s1871 Capsella rubella HOM05D000399 ORTHO05D000304 5.2e-09 65.5 170 31.2
DCAR_019363 Daucus carota HOM05D000399 ORTHO05D000304 8.8e-09 64.7 92 42.4
Cpa.g.sc397.6 Carica papaya HOM05D000361 ORTHO05D008498 1.2e-08 64.3 77 46.8
DCAR_008820 Daucus carota HOM05D000399 ORTHO05D000304 1.2e-08 64.3 83 43.4
Haze_16641 Corylus avellana HOM05D000399 ORTHO05D010012 3.4e-08 62.8 50 66.0
DCAR_019361 Daucus carota HOM05D000399 ORTHO05D000304 3.4e-08 62.8 91 42.9
Nitab4.5_0006291g0070 Nicotiana tabacum HOM05D000399 ORTHO05D010012 3.4e-08 62.8 54 57.4
CARHR192510 Cardamine hirsuta HOM05D000399 ORTHO05D000304 5.7e-08 62.0 136 36.8
Thhalv10009231m.g Eutrema salsugineum HOM05D002847 ORTHO05D010012 3.7e-07 59.3 82 50.0
arahy.Tifrunner.gnm1.ann1.I9YAW2 Arachis hypogaea HOM05D000399 ORTHO05D010012 6.3e-07 58.5 55 41.8
arahy.Tifrunner.gnm1.ann1.F8AJCT Arachis hypogaea HOM05D000399 ORTHO05D010012 2.4e-06 56.6 57 40.4


User provided reference genes

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