Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G56790 Arabidopsis thaliana HOM05D003093 ORTHO05D082132 9.7e-94 347.1 207 100.0
AT3G55935 Arabidopsis thaliana HOM05D003093 ORTHO05D082148 7.0e-44 181.4 144 74.3
AL5G37210 Arabidopsis lyrata HOM05D003093 ORTHO05D004301 1.5e-41 173.7 150 68.0
Carub.0005s2292 Capsella rubella HOM05D003093 ORTHO05D004301 5.4e-12 75.5 107 51.4
Gorai.010G203000 Gossypium raimondii HOM05D003093 ORTHO05D004301 1.9e-09 67.0 94 50.0
Ciclev10030694m.g Citrus clementina HOM05D003093 ORTHO05D004301 4.3e-09 65.9 94 48.9
Gohir.D06G173600 Gossypium hirsutum HOM05D003093 ORTHO05D004301 5.6e-09 65.5 93 49.5
Sed0012201 Sechium edule HOM05D003093 ORTHO05D004301 5.6e-09 65.5 105 45.7
Gohir.A06G177800 Gossypium hirsutum HOM05D003093 ORTHO05D004301 9.6e-09 64.7 94 48.9
Gohir.A10G209800 Gossypium hirsutum HOM05D003093 ORTHO05D004301 1.2e-08 64.3 94 50.0
MELO3C023809.2 Cucumis melo HOM05D003093 ORTHO05D004301 2.1e-08 63.5 105 44.8
CsaV3_5G006530 Cucumis sativus L. HOM05D003093 ORTHO05D004301 2.1e-08 63.5 105 44.8
Thecc.10G062100 Theobroma cacao HOM05D003093 ORTHO05D004301 2.8e-08 63.2 94 48.9
ClCG02G013660 Citrullus lanatus HOM05D003093 ORTHO05D004301 3.6e-08 62.8 105 44.8
Duzib128G1511 Durio zibethinus HOM05D003093 ORTHO05D004301 6.2e-08 62.0 94 47.9
Gohir.D10G218100 Gossypium hirsutum HOM05D003093 ORTHO05D004301 6.2e-08 62.0 94 48.9
Gorai.011G244700 Gossypium raimondii HOM05D003093 ORTHO05D004301 6.2e-08 62.0 94 48.9
CiPaw.01G280100 Carya illinoinensis HOM05D003093 ORTHO05D004301 8.1e-08 61.6 63 55.6
Duzib114G0430 Durio zibethinus HOM05D003093 ORTHO05D004301 8.1e-08 61.6 94 47.9
Duzib114G0987 Durio zibethinus HOM05D003093 ORTHO05D004301 8.1e-08 61.6 94 47.9
Manes.10G038800 Manihot esculenta HOM05D003093 ORTHO05D004301 1.1e-07 61.2 94 45.7
PGR142G0268 Punica granatum HOM05D003093 ORTHO05D004301 1.1e-07 61.2 103 44.7
QL08p057653 Quercus lobata HOM05D003093 ORTHO05D004301 1.1e-07 61.2 107 41.1
THA.LOC104827309 Tarenaya hassleriana HOM05D003093 ORTHO05D004301 1.1e-07 61.2 94 46.8
SGA_v2.0_scaffold221G42698 Striga asiatica HOM05D003093 ORTHO05D004301 1.4e-07 60.8 129 35.7
Cfa001556 Carpinus fangiana HOM05D003093 ORTHO05D004301 1.8e-07 60.5 63 54.0
Haze_16975 Corylus avellana HOM05D003093 ORTHO05D004301 1.8e-07 60.5 63 54.0
TWI38G0009 Tripterygium wilfordii HOM05D003093 ORTHO05D004301 1.8e-07 60.5 131 40.5
GSVIVG01032624001 Vitis vinifera HOM05D003093 ORTHO05D004301 1.8e-07 60.5 93 47.3
AT1G28060 Arabidopsis thaliana HOM05D003093 ORTHO05D004301 2.4e-07 60.1 94 47.9
COL.COLO4_10868 Corchorus olitorius HOM05D003093 ORTHO05D004301 2.4e-07 60.1 93 47.3
MD07G1185000 Malus domestica HOM05D003093 ORTHO05D004301 2.4e-07 60.1 96 42.7
Manes.07G106800 Manihot esculenta HOM05D003093 ORTHO05D004301 2.4e-07 60.1 94 44.7
SGA_v2.0_scaffold2G01039 Striga asiatica HOM05D003093 ORTHO05D004301 2.4e-07 60.1 112 38.4
FvH4_7g20820 Fragaria vesca HOM05D003093 ORTHO05D004301 3.1e-07 59.7 96 41.7
Oeu009484.1 Olea europaea HOM05D003093 ORTHO05D004301 3.1e-07 59.7 98 44.9
AL1G41570 Arabidopsis lyrata HOM05D003093 ORTHO05D004301 4.0e-07 59.3 59 62.7
Cpa.g.sc1.306 Carica papaya HOM05D003093 ORTHO05D004301 4.0e-07 59.3 94 45.7
Eucgr.G02772 Eucalyptus grandis HOM05D003093 ORTHO05D004301 4.0e-07 59.3 63 54.0
Thhalv10006834m.g Eutrema salsugineum HOM05D003093 ORTHO05D004301 4.0e-07 59.3 94 46.8
Potri.008G048000 Populus trichocarpa HOM05D003093 ORTHO05D004301 4.0e-07 59.3 101 45.5
RcHm_v2.0_Chr1g0365041 Rosa chinensis HOM05D003093 ORTHO05D004301 4.0e-07 59.3 63 55.6
Sabra08G0034200 Salix brachista HOM05D003093 ORTHO05D004301 4.0e-07 59.3 101 43.6
Sed0009358 Sechium edule HOM05D003093 ORTHO05D004301 4.0e-07 59.3 62 59.7
FAN01G1115 Fragaria x ananassa HOM05D003093 ORTHO05D004301 5.3e-07 58.9 103 39.8
FAN03G1537 Fragaria x ananassa HOM05D003093 ORTHO05D004301 5.3e-07 58.9 103 39.8
FAN06G1239 Fragaria x ananassa HOM05D003093 ORTHO05D004301 5.3e-07 58.9 103 39.8
FAN06G3924 Fragaria x ananassa HOM05D003093 ORTHO05D004301 5.3e-07 58.9 103 39.8
Potri.010G213300 Populus trichocarpa HOM05D003093 ORTHO05D004301 5.3e-07 58.9 101 43.6
Prupe.2G224900 Prunus persica HOM05D003093 ORTHO05D004301 5.3e-07 58.9 124 39.5
TAR623G1133 Trochodendron aralioides HOM05D003093 ORTHO05D004301 5.3e-07 58.9 99 42.4
Aa31sc146G40 Aethionema arabicum HOM05D003093 ORTHO05D004301 6.9e-07 58.5 59 57.6
BolC3t19719H Brassica oleracea HOM05D003093 ORTHO05D004301 6.9e-07 58.5 99 45.5
MD01G1117500 Malus domestica HOM05D003093 ORTHO05D004301 6.9e-07 58.5 96 41.7
BcaC05g26621 Brassica carinata HOM05D003093 ORTHO05D004301 9.0e-07 58.2 57 63.2
C05p26730 Brassica napus HOM05D003093 ORTHO05D004301 9.0e-07 58.2 57 63.2
BolC5t31397H Brassica oleracea HOM05D003093 ORTHO05D004301 9.0e-07 58.2 57 63.2
CANSAT78G1625 Cannabis sativa HOM05D003093 ORTHO05D004301 9.0e-07 58.2 94 47.9
Ca_11321_v3 Cicer arietinum L. HOM05D003093 ORTHO05D004301 9.0e-07 58.2 104 40.4
C03p74710 Brassica napus HOM05D003093 ORTHO05D004301 1.2e-06 57.8 99 45.5
ECA233G1939 Erigeron canadensis HOM05D003093 ORTHO05D004301 1.2e-06 57.8 94 43.6
MBI05_g32633_MAGBIO Magnolia biondii HOM05D003093 ORTHO05D004301 1.2e-06 57.8 99 44.4
unitig_32.g10676 Utricularia gibba HOM05D003093 ORTHO05D004301 1.2e-06 57.8 98 42.9
Carub.0001s2649 Capsella rubella HOM05D003093 ORTHO05D004301 1.5e-06 57.4 102 46.1
HanXRQChr16g0532861 Helianthus annuus HOM05D003093 ORTHO05D004301 1.5e-06 57.4 93 45.2
Oeu039037.3 Olea europaea HOM05D003093 ORTHO05D004301 1.5e-06 57.4 98 42.9
Sabra10G0165100 Salix brachista HOM05D003093 ORTHO05D004301 1.5e-06 57.4 131 38.9
Sp1g24240 Schrenkiella parvula HOM05D003093 ORTHO05D004301 1.5e-06 57.4 57 63.2
Atru.chr12.588 Acer truncatum HOM05D003093 ORTHO05D004301 2.0e-06 57.0 59 55.9
Ah.10g033320 Amaranthus hybridus HOM05D003093 ORTHO05D004301 2.0e-06 57.0 93 46.2
FvH4_2g04410 Fragaria vesca HOM05D003093 ORTHO05D004301 2.0e-06 57.0 64 51.6
Nn2g10548 Nelumbo nucifera HOM05D003093 ORTHO05D004301 2.0e-06 57.0 93 46.2
PSO541G5925 Papaver somniferum HOM05D003093 ORTHO05D004301 2.0e-06 57.0 94 42.6
PSO675G6375 Papaver somniferum HOM05D003093 ORTHO05D004301 2.0e-06 57.0 94 42.6
CiPaw.02G178700 Carya illinoinensis HOM05D003093 ORTHO05D004301 2.6e-06 56.6 60 55.0
Glyma.20G241900 Glycine max HOM05D003093 ORTHO05D004301 2.6e-06 56.6 156 35.9
Lalb_Chr02g0143891 Lupinus albus HOM05D003093 ORTHO05D004301 2.6e-06 56.6 60 55.0
Medtr4g094355 Medicago truncatula HOM05D003093 ORTHO05D004301 2.6e-06 56.6 123 39.8
Sc06g0001860 Simmondsia chinensis HOM05D003093 ORTHO05D004301 2.6e-06 56.6 93 44.1
AT3G55930 Arabidopsis thaliana HOM05D003093 ORTHO05D004301 3.4e-06 56.2 60 55.0
A09p38030 Brassica napus HOM05D003093 ORTHO05D004301 3.4e-06 56.2 60 53.3
BraA09t39313Z Brassica rapa HOM05D003093 ORTHO05D004301 3.4e-06 56.2 60 53.3
FAN10G3079 Fragaria x ananassa HOM05D003093 ORTHO05D004301 3.4e-06 56.2 103 38.8
TPR.G11535 Trifolium pratense HOM05D003093 ORTHO05D004301 3.4e-06 56.2 104 40.4
Lj5g0014436 Lotus japonicus HOM05D003093 ORTHO05D004301 4.4e-06 55.8 63 50.8
SHI28152 Sapria himalayana HOM05D003093 ORTHO05D000168 4.4e-06 55.8 63 52.4
AagrBONN_evm.TU.Sc2ySwM_117.140 Anthoceros agrestis HOM05D003093 ORTHO05D004301 5.8e-06 55.5 60 53.3
BcaC05g26809 Brassica carinata HOM05D003093 ORTHO05D004301 5.8e-06 55.5 60 53.3
A08p25940 Brassica napus HOM05D003093 ORTHO05D004301 5.8e-06 55.5 60 53.3
BraA08t34545Z Brassica rapa HOM05D003093 ORTHO05D004301 5.8e-06 55.5 60 53.3
ECA234G2610 Erigeron canadensis HOM05D003093 ORTHO05D004301 5.8e-06 55.5 79 45.6
HanXRQChr15g0482981 Helianthus annuus HOM05D003093 ORTHO05D004301 5.8e-06 55.5 98 41.8
Psat6g163840 Pisum sativum HOM05D003093 ORTHO05D004301 5.8e-06 55.5 107 38.3
TPR.G10418 Trifolium pratense HOM05D003093 ORTHO05D004301 5.8e-06 55.5 110 39.1
Actinidia38222 Actinidia chinensis HOM05D003093 ORTHO05D004301 7.6e-06 55.1 94 43.6
ATR0580G275 Amborella trichopoda HOM05D003093 ORTHO05D004301 7.6e-06 55.1 68 48.5
CSS0040311 Camellia sinensis var. sinensis HOM05D003093 ORTHO05D004301 7.6e-06 55.1 93 44.1
CSS0050146 Camellia sinensis var. sinensis HOM05D003093 ORTHO05D004301 7.6e-06 55.1 93 44.1
CARHR027510 Cardamine hirsuta HOM05D003093 ORTHO05D004301 7.6e-06 55.1 165 40.0
Phvul.002G037600 Phaseolus vulgaris HOM05D003093 ORTHO05D004301 7.6e-06 55.1 151 35.8
CDE10G0729 Ceratophyllum demersum HOM05D003093 ORTHO05D004301 9.9e-06 54.7 63 52.4
Dinv31391 Davidia involucrata HOM05D003093 ORTHO05D004301 9.9e-06 54.7 111 37.8
Migut.F00813 Erythranthe guttata HOM05D003093 ORTHO05D004301 9.9e-06 54.7 98 39.8
Lj1A929G70 Lonicera japonica HOM05D003093 ORTHO05D004301 9.9e-06 54.7 93 43.0
Medtr1g115920 Medicago truncatula HOM05D003093 ORTHO05D004301 9.9e-06 54.7 107 39.3
Peaxi162Scf00015g02612 Petunia axillaris HOM05D003093 ORTHO05D004301 9.9e-06 54.7 96 42.7
TPR.G27039 Trifolium pratense HOM05D003093 ORTHO05D004301 9.9e-06 54.7 112 34.8


User provided reference genes

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