Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G55930 Arabidopsis thaliana HOM05D003093 ORTHO05D004301 1.9e-142 509.2 271 100.0
Carub.0001s2649 Capsella rubella HOM05D003093 ORTHO05D004301 8.7e-103 377.5 277 74.4
BraA08t34545Z Brassica rapa HOM05D003093 ORTHO05D004301 2.8e-101 372.5 278 75.5
Sp1g24240 Schrenkiella parvula HOM05D003093 ORTHO05D004301 2.8e-101 372.5 279 75.6
Thhalv10006834m.g Eutrema salsugineum HOM05D003093 ORTHO05D004301 3.7e-101 372.1 277 76.2
A08p25940 Brassica napus HOM05D003093 ORTHO05D004301 1.4e-100 370.2 277 75.5
AL1G41570 Arabidopsis lyrata HOM05D003093 ORTHO05D004301 1.8e-100 369.8 274 75.2
AT1G28060 Arabidopsis thaliana HOM05D003093 ORTHO05D004301 3.1e-100 369.0 273 74.4
CARHR027510 Cardamine hirsuta HOM05D003093 ORTHO05D004301 9.0e-100 367.5 277 74.0
BcaC01g00003 Brassica carinata HOM05D003093 ORTHO05D004301 1.5e-99 366.7 277 74.7
BcaC05g26809 Brassica carinata HOM05D003093 ORTHO05D004301 2.0e-99 366.3 278 74.8
Aa31sc146G40 Aethionema arabicum HOM05D003093 ORTHO05D004301 2.6e-99 365.9 273 75.1
BraA09t39313Z Brassica rapa HOM05D003093 ORTHO05D004301 2.6e-99 365.9 278 76.6
A09p38030 Brassica napus HOM05D003093 ORTHO05D004301 5.9e-99 364.8 278 76.3
C03p74710 Brassica napus HOM05D003093 ORTHO05D004301 1.0e-98 364.0 274 74.1
BolC3t19719H Brassica oleracea HOM05D003093 ORTHO05D004301 1.0e-98 364.0 277 74.4
Carub.0005s2292 Capsella rubella HOM05D003093 ORTHO05D004301 1.3e-98 363.6 271 74.9
BcaC05g26621 Brassica carinata HOM05D003093 ORTHO05D004301 2.2e-98 362.8 277 76.2
C05p26730 Brassica napus HOM05D003093 ORTHO05D004301 2.2e-98 362.8 277 76.2
BolC5t31397H Brassica oleracea HOM05D003093 ORTHO05D004301 1.1e-97 360.5 277 75.5
AL5G37210 Arabidopsis lyrata HOM05D003093 ORTHO05D004301 4.1e-92 342.0 274 71.9
THA.LOC104827309 Tarenaya hassleriana HOM05D003093 ORTHO05D004301 9.7e-86 320.9 273 66.3
MBI05_g32633_MAGBIO Magnolia biondii HOM05D003093 ORTHO05D004301 2.8e-85 319.3 274 62.8
Lalb_Chr02g0143891 Lupinus albus HOM05D003093 ORTHO05D004301 6.3e-85 318.2 273 61.9
TAR623G1133 Trochodendron aralioides HOM05D003093 ORTHO05D004301 8.2e-85 317.8 272 64.0
Sabra10G0165100 Salix brachista HOM05D003093 ORTHO05D004301 1.1e-84 317.4 271 63.8
Potri.010G213300 Populus trichocarpa HOM05D003093 ORTHO05D004301 1.8e-84 316.6 272 63.6
CsaV3_5G006530 Cucumis sativus L. HOM05D003093 ORTHO05D004301 2.4e-84 316.2 270 63.3
ECA233G1939 Erigeron canadensis HOM05D003093 ORTHO05D004301 4.1e-84 315.5 271 62.0
Glyma.20G241900 Glycine max HOM05D003093 ORTHO05D004301 1.2e-83 313.9 273 63.0
Nn2g10548 Nelumbo nucifera HOM05D003093 ORTHO05D004301 1.2e-83 313.9 272 64.0
Oeu039037.3 Olea europaea HOM05D003093 ORTHO05D004301 1.5e-83 313.5 273 64.5
Thecc.10G062100 Theobroma cacao HOM05D003093 ORTHO05D004301 2.0e-83 313.2 272 63.2
arahy.Tifrunner.gnm1.ann1.59ZZV8 Arachis hypogaea HOM05D003093 ORTHO05D004301 2.6e-83 312.8 273 63.0
CiPaw.02G178700 Carya illinoinensis HOM05D003093 ORTHO05D004301 2.6e-83 312.8 270 62.2
Glyma.01G229700 Glycine max HOM05D003093 ORTHO05D004301 2.6e-83 312.8 272 62.9
Mapoly0014s0207 Marchantia polymorpha HOM05D003093 ORTHO05D004301 2.6e-83 312.8 267 62.9
Hma1.2p1_0207F.1_g087910 Hydrangea macrophylla HOM05D003093 ORTHO05D004301 3.4e-83 312.4 271 62.0
Lj1A929G70 Lonicera japonica HOM05D003093 ORTHO05D004301 3.4e-83 312.4 272 64.7
VMungo0720G2412 Vigna mungo HOM05D003093 ORTHO05D004301 3.4e-83 312.4 272 62.1
Ciclev10030694m.g Citrus clementina HOM05D003093 ORTHO05D004301 4.5e-83 312.0 274 62.4
MD01G1117500 Malus domestica HOM05D003093 ORTHO05D004301 4.5e-83 312.0 273 63.4
Ca_11321_v3 Cicer arietinum L. HOM05D003093 ORTHO05D004301 7.7e-83 311.2 273 61.5
Glyma.11G012500 Glycine max HOM05D003093 ORTHO05D004301 7.7e-83 311.2 273 61.9
SGA_v2.0_scaffold221G42698 Striga asiatica HOM05D003093 ORTHO05D004301 7.7e-83 311.2 278 62.9
CiPaw.01G280100 Carya illinoinensis HOM05D003093 ORTHO05D004301 1.0e-82 310.8 273 63.0
arahy.Tifrunner.gnm1.ann1.YKFK84 Arachis hypogaea HOM05D003093 ORTHO05D004301 1.3e-82 310.5 273 62.6
Duzib128G1511 Durio zibethinus HOM05D003093 ORTHO05D004301 1.3e-82 310.5 271 62.7
Prupe.2G224900 Prunus persica HOM05D003093 ORTHO05D004301 1.3e-82 310.5 273 61.2
RcHm_v2.0_Chr1g0365041 Rosa chinensis HOM05D003093 ORTHO05D004301 1.3e-82 310.5 272 64.0
Gorai.010G203000 Gossypium raimondii HOM05D003093 ORTHO05D004301 1.7e-82 310.1 273 64.1
Lj5g0014436 Lotus japonicus HOM05D003093 ORTHO05D004301 1.7e-82 310.1 273 61.9
Phvul.007G008300 Phaseolus vulgaris HOM05D003093 ORTHO05D004301 1.7e-82 310.1 272 62.1
Gohir.D06G173600 Gossypium hirsutum HOM05D003093 ORTHO05D004301 2.2e-82 309.7 273 63.7
Ah.10g033320 Amaranthus hybridus HOM05D003093 ORTHO05D004301 2.9e-82 309.3 271 64.9
MD07G1185000 Malus domestica HOM05D003093 ORTHO05D004301 3.8e-82 308.9 273 63.7
Haze_16975 Corylus avellana HOM05D003093 ORTHO05D004301 5.0e-82 308.5 273 62.3
Gohir.A06G177800 Gossypium hirsutum HOM05D003093 ORTHO05D004301 5.0e-82 308.5 273 63.7
Psat6g240760 Pisum sativum HOM05D003093 ORTHO05D004301 5.0e-82 308.5 273 61.2
GSVIVG01032624001 Vitis vinifera HOM05D003093 ORTHO05D004301 5.0e-82 308.5 271 63.1
Potri.008G048000 Populus trichocarpa HOM05D003093 ORTHO05D004301 6.5e-82 308.1 270 61.9
Aqoxy1G01978 Aquilegia oxysepala HOM05D003093 ORTHO05D004301 8.5e-82 307.8 271 63.1
Manes.07G106800 Manihot esculenta HOM05D003093 ORTHO05D004301 1.1e-81 307.4 274 62.4
Manes.10G038800 Manihot esculenta HOM05D003093 ORTHO05D004301 1.1e-81 307.4 272 63.2
FAN06G3924 Fragaria x ananassa HOM05D003093 ORTHO05D004301 1.4e-81 307.0 272 61.8
PSO541G5925 Papaver somniferum HOM05D003093 ORTHO05D004301 1.4e-81 307.0 274 62.4
FvH4_7g20820 Fragaria vesca HOM05D003093 ORTHO05D004301 1.9e-81 306.6 272 62.9
HanXRQChr15g0482981 Helianthus annuus HOM05D003093 ORTHO05D004301 2.5e-81 306.2 270 61.5
ATR0580G275 Amborella trichopoda HOM05D003093 ORTHO05D004301 3.2e-81 305.8 267 62.9
Eucgr.G02772 Eucalyptus grandis HOM05D003093 ORTHO05D004301 3.2e-81 305.8 272 61.4
PSO675G6375 Papaver somniferum HOM05D003093 ORTHO05D004301 3.2e-81 305.8 275 61.8
Sabra08G0034200 Salix brachista HOM05D003093 ORTHO05D004301 3.2e-81 305.8 270 61.5
SGA_v2.0_scaffold2G01039 Striga asiatica HOM05D003093 ORTHO05D004301 3.2e-81 305.8 277 61.7
Cpa.g.sc1.306 Carica papaya HOM05D003093 ORTHO05D004301 4.2e-81 305.4 272 62.1
Cfa001556 Carpinus fangiana HOM05D003093 ORTHO05D004301 4.2e-81 305.4 273 61.9
FAN06G1239 Fragaria x ananassa HOM05D003093 ORTHO05D004301 4.2e-81 305.4 272 62.5
Duzib114G0430 Durio zibethinus HOM05D003093 ORTHO05D004301 5.5e-81 305.1 271 62.4
Duzib114G0987 Durio zibethinus HOM05D003093 ORTHO05D004301 5.5e-81 305.1 271 62.4
TPR.G10418 Trifolium pratense HOM05D003093 ORTHO05D004301 5.5e-81 305.1 273 60.1
Dinv31391 Davidia involucrata HOM05D003093 ORTHO05D004301 9.4e-81 304.3 272 64.0
ECA234G2610 Erigeron canadensis HOM05D003093 ORTHO05D004301 9.4e-81 304.3 268 63.1
Medtr1g115920 Medicago truncatula HOM05D003093 ORTHO05D004301 9.4e-81 304.3 273 60.1
TWI38G0009 Tripterygium wilfordii HOM05D003093 ORTHO05D004301 9.4e-81 304.3 272 62.1
FAN03G1537 Fragaria x ananassa HOM05D003093 ORTHO05D004301 1.2e-80 303.9 272 62.5
Hund22428 Selenicereus undatus HOM05D003093 ORTHO05D004301 1.2e-80 303.9 269 63.2
CAN.G546.16 Capsicum annuum HOM05D003093 ORTHO05D004301 2.1e-80 303.1 275 62.5
ClCG02G013660 Citrullus lanatus HOM05D003093 ORTHO05D004301 2.1e-80 303.1 270 61.9
Gohir.A10G209800 Gossypium hirsutum HOM05D003093 ORTHO05D004301 2.1e-80 303.1 272 63.6
TPR.G11535 Trifolium pratense HOM05D003093 ORTHO05D004301 2.1e-80 303.1 273 59.0
MELO3C023809.2 Cucumis melo HOM05D003093 ORTHO05D004301 3.6e-80 302.4 270 60.7
Gohir.D10G218100 Gossypium hirsutum HOM05D003093 ORTHO05D004301 3.6e-80 302.4 272 61.4
TPR.G27039 Trifolium pratense HOM05D003093 ORTHO05D004301 3.6e-80 302.4 269 59.9
Gorai.011G244700 Gossypium raimondii HOM05D003093 ORTHO05D004301 4.7e-80 302.0 272 63.2
HPP92_019592 Vanilla planifolia HOM05D003093 ORTHO05D004301 6.1e-80 301.6 273 60.1
Lalb_Chr21g0307191 Lupinus albus HOM05D003093 ORTHO05D004301 8.0e-80 301.2 273 60.4
Rhsim03G0125400 Rhododendron simsii HOM05D003093 ORTHO05D004301 8.0e-80 301.2 272 61.0
CANSAT78G1625 Cannabis sativa HOM05D003093 ORTHO05D004301 1.0e-79 300.8 272 62.1
Sed0012201 Sechium edule HOM05D003093 ORTHO05D004301 1.0e-79 300.8 271 59.8
QL08p057653 Quercus lobata HOM05D003093 ORTHO05D004301 1.4e-79 300.4 269 61.7
VMungo0720G2126 Vigna mungo HOM05D003093 ORTHO05D004301 1.4e-79 300.4 273 60.1
FAN10G3079 Fragaria x ananassa HOM05D003093 ORTHO05D004301 2.3e-79 299.7 272 61.4
PGR142G0268 Punica granatum HOM05D003093 ORTHO05D004301 2.3e-79 299.7 272 62.1
TAR320G0003 Trochodendron aralioides HOM05D003093 ORTHO05D004301 2.3e-79 299.7 271 61.6
Sc06g0001860 Simmondsia chinensis HOM05D003093 ORTHO05D004301 3.0e-79 299.3 280 59.3
CDE10G0582 Ceratophyllum demersum HOM05D003093 ORTHO05D004301 3.9e-79 298.9 272 59.9
Phvul.002G037600 Phaseolus vulgaris HOM05D003093 ORTHO05D004301 3.9e-79 298.9 273 59.7
EL10Ac2g03490 Beta vulgaris HOM05D003093 ORTHO05D004301 5.2e-79 298.5 272 62.5
Peaxi162Scf00015g02612 Petunia axillaris HOM05D003093 ORTHO05D004301 5.2e-79 298.5 273 59.3
PGSC0003DMG400002376 Solanum tuberosum HOM05D003093 ORTHO05D004301 5.2e-79 298.5 275 62.2
SEGI_11595 Sequoiadendron giganteum HOM05D003093 ORTHO05D004301 6.7e-79 298.1 273 61.2
SEGI_36215 Sequoiadendron giganteum HOM05D003093 ORTHO05D004301 6.7e-79 298.1 273 61.2
HanXRQChr16g0532861 Helianthus annuus HOM05D003093 ORTHO05D004301 8.8e-79 297.7 266 62.4
AagrBONN_evm.TU.Sc2ySwM_117.140 Anthoceros agrestis HOM05D003093 ORTHO05D004301 2.0e-78 296.6 274 60.6
Cc02_g08600 Coffea canephora HOM05D003093 ORTHO05D004301 2.0e-78 296.6 268 62.3
TPR.G27107 Trifolium pratense HOM05D003093 ORTHO05D004301 2.0e-78 296.6 272 58.5
Solyc06g036580.4 Solanum lycopersicum HOM05D003093 ORTHO05D004301 4.4e-78 295.4 275 61.8
Zm00001eb204030 Zea mays HOM05D003093 ORTHO05D004301 4.4e-78 295.4 273 59.0
SalBow8G1202 Salvia bowleyana HOM05D003093 ORTHO05D004301 5.7e-78 295.0 272 60.7
SEGI_10080 Sequoiadendron giganteum HOM05D003093 ORTHO05D004301 5.7e-78 295.0 273 60.4
Zm00001eb238080 Zea mays HOM05D003093 ORTHO05D004301 9.7e-78 294.3 274 58.4
SHI28152 Sapria himalayana HOM05D003093 ORTHO05D000168 1.7e-77 293.5 269 62.1
Sopen06g008290 Solanum pennellii HOM05D003093 ORTHO05D004301 2.8e-77 292.7 275 61.5
Lsat_1_v5_gn_3_65860 Lactuca sativa HOM05D003093 ORTHO05D004301 8.2e-77 291.2 273 59.7
SalBow3G0936 Salvia bowleyana HOM05D003093 ORTHO05D004301 8.2e-77 291.2 272 59.9
Sed0009358 Sechium edule HOM05D003093 ORTHO05D004301 1.1e-76 290.8 268 60.1
Migut.F00813 Erythranthe guttata HOM05D003093 ORTHO05D004301 1.4e-76 290.4 276 58.7
unitig_32.g10676 Utricularia gibba HOM05D003093 ORTHO05D004301 9.1e-76 287.7 273 57.5
Os09g0249600 Oryza sativa ssp. japonica HOM05D003093 ORTHO05D004301 2.0e-75 286.6 273 57.5
Actinidia38222 Actinidia chinensis HOM05D003093 ORTHO05D004301 3.0e-71 272.7 272 56.6
Pp3c14_26820 Physcomitrium patens HOM05D003093 ORTHO05D004301 8.8e-71 271.2 258 58.9
CBR_g41418 Chara braunii HOM05D003093 ORTHO05D004301 2.6e-70 269.6 273 56.0
CSS0040311 Camellia sinensis var. sinensis HOM05D003093 ORTHO05D004301 4.4e-70 268.9 272 56.2
CSS0050146 Camellia sinensis var. sinensis HOM05D003093 ORTHO05D004301 4.4e-70 268.9 272 56.2
PGSC0003DMG400023507 Solanum tuberosum HOM05D003093 ORTHO05D004301 5.7e-70 268.5 270 55.9
Sopen05g033340 Solanum pennellii HOM05D003093 ORTHO05D004301 2.8e-69 266.2 270 56.3
Solyc05g054880.3 Solanum lycopersicum HOM05D003093 ORTHO05D004301 1.2e-67 260.8 270 55.2
Nitab4.5_0022203g0010 Nicotiana tabacum HOM05D003093 ORTHO05D004301 2.7e-67 259.6 269 56.1
SMO340G0141 Selaginella moellendorffii HOM05D003093 ORTHO05D004301 8.5e-66 254.6 265 52.8
AUR62025537 Chenopodium quinoa HOM05D003093 ORTHO05D004301 6.8e-63 245.0 265 55.5
AUR62042671 Chenopodium quinoa HOM05D003093 ORTHO05D004301 6.8e-63 245.0 265 55.5
FAN01G1069 Fragaria x ananassa HOM05D003093 ORTHO05D004301 3.7e-61 239.2 198 66.2
FAN01G1323 Fragaria x ananassa HOM05D003093 ORTHO05D004301 3.7e-61 239.2 198 66.2
FAN01G1115 Fragaria x ananassa HOM05D003093 ORTHO05D004301 1.8e-60 236.9 207 64.3
Rhsim09G0156000 Rhododendron simsii HOM05D003093 ORTHO05D004301 1.2e-59 234.2 266 51.1
Oeu009485.1 Olea europaea HOM05D003093 ORTHO05D004301 5.9e-59 231.9 198 63.6
CAN.G348.4 Capsicum annuum HOM05D003093 ORTHO05D004301 1.9e-57 226.9 210 60.0
COL.COLO4_10868 Corchorus olitorius HOM05D003093 ORTHO05D004301 7.2e-57 224.9 194 66.0
Medtr4g094355 Medicago truncatula HOM05D003093 ORTHO05D004301 1.7e-53 213.8 186 60.8
Atru.chr12.590 Acer truncatum HOM05D003093 ORTHO05D004301 5.0e-50 202.2 177 67.2
Actinidia02998 Actinidia chinensis HOM05D003093 ORTHO05D004301 8.6e-50 201.4 209 57.9
TPR.G27067 Trifolium pratense HOM05D003093 ORTHO05D004301 8.6e-50 201.4 209 53.6
Cre09.g416000 Chlamydomonas reinhardtii HOM05D003093 ORTHO05D004301 1.5e-49 200.7 298 39.9
PSO275G0001 Papaver somniferum HOM05D003093 ORTHO05D004301 2.4e-44 183.3 159 66.7
TPR.G40489 Trifolium pratense HOM05D003093 ORTHO05D004301 2.5e-41 173.3 161 56.5
Medtr5g039050 Medicago truncatula HOM05D003093 ORTHO05D004301 5.6e-41 172.2 189 55.6
Aqoxy2G01568 Aquilegia oxysepala HOM05D003093 ORTHO05D004301 1.2e-35 154.5 135 68.1
Lsat_1_v5_gn_6_55440 Lactuca sativa HOM05D003093 ORTHO05D004301 1.3e-34 151.0 118 69.5
PRCOL_00003477 Prasinoderma coloniale HOM05D003093 ORTHO05D004301 1.3e-34 151.0 280 36.8
CDE10G0729 Ceratophyllum demersum HOM05D003093 ORTHO05D004301 3.0e-34 149.8 130 65.4
TPR.G4996 Trifolium pratense HOM05D003093 ORTHO05D004301 4.3e-33 146.0 122 63.1
CARHR159400 Cardamine hirsuta HOM05D005746 ORTHO05D007105 7.5e-30 135.2 104 76.0
A09p69230 Brassica napus HOM05D003093 ORTHO05D015210 4.9e-29 132.5 120 65.0
QL02p099154 Quercus lobata HOM05D003275 ORTHO05D003732 7.1e-28 128.6 146 55.5
CAN.G97.8 Capsicum annuum HOM05D003093 ORTHO05D018860 4.6e-27 125.9 113 58.4
CAN.G28.18 Capsicum annuum HOM05D003093 ORTHO05D004301 6.0e-27 125.6 136 54.4
Cfa024969 Carpinus fangiana HOM05D003093 ORTHO05D004301 1.1e-23 114.8 286 28.7
Lj2A860T8 Lonicera japonica HOM05D003093 ORTHO05D019262 5.8e-22 109.0 165 40.0
A02p10760 Brassica napus HOM05D003093 ORTHO05D015210 9.9e-22 108.2 145 49.0
Lj2A862T14 Lonicera japonica HOM05D003093 ORTHO05D019262 1.3e-21 107.8 136 44.1
TPR.G30178 Trifolium pratense HOM05D003093 ORTHO05D004301 1.7e-21 107.5 109 52.3
Prupe.6G042200 Prunus persica HOM05D003093 ORTHO05D004301 2.2e-21 107.1 95 52.6
Lj2P843T9 Lonicera japonica HOM05D003093 ORTHO05D019262 2.9e-21 106.7 173 37.6
unitig_88.g27763 Utricularia gibba HOM05D003093 ORTHO05D004301 4.2e-20 102.8 96 57.3
BNapus_Darmor_BZH_scaffold_38p00130 Brassica napus HOM05D003093 ORTHO05D015210 2.7e-19 100.1 145 47.6
A03p13900 Brassica napus HOM05D003093 ORTHO05D015210 4.6e-19 99.4 128 49.2
C03p14570 Brassica napus HOM05D003093 ORTHO05D015210 3.0e-18 96.7 141 46.1
C04p46620 Brassica napus HOM05D003093 ORTHO05D015210 3.0e-18 96.7 120 50.8
BraA06t25990Z Brassica rapa HOM05D003093 ORTHO05D015210 3.0e-18 96.7 141 46.1
A06p30680 Brassica napus HOM05D003093 ORTHO05D015210 3.9e-18 96.3 120 50.8
Lj2A846T19 Lonicera japonica HOM05D003093 ORTHO05D019262 6.9e-15 85.5 130 37.7
unitig_88.g27762 Utricularia gibba HOM05D003093 ORTHO05D004301 6.4e-13 79.0 49 65.3
A06p30420 Brassica napus HOM05D003093 ORTHO05D015210 7.1e-12 75.5 69 65.2
A03p18450 Brassica napus HOM05D003093 ORTHO05D015210 1.0e-10 71.6 45 86.7
Lj2A842G6 Lonicera japonica HOM05D003093 ORTHO05D019262 1.7e-10 70.9 141 35.5
Lj2C863G7 Lonicera japonica HOM05D003093 ORTHO05D004301 3.6e-08 63.2 130 33.1
A06p30410 Brassica napus HOM05D003093 ORTHO05D015210 1.4e-07 61.2 46 65.2


User provided reference genes

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