Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G22010 Arabidopsis thaliana HOM05D004874 ORTHO05D006796 0.0e+00 2575.8 1284 100.0
AL4G11330 Arabidopsis lyrata HOM05D004874 ORTHO05D006796 0.0e+00 2493.0 1284 96.5
CARHR113090 Cardamine hirsuta HOM05D004874 ORTHO05D006796 0.0e+00 2433.7 1285 94.3
Carub.0004s0115 Capsella rubella HOM05D004874 ORTHO05D006796 0.0e+00 2412.5 1269 94.2
Sp4g01070 Schrenkiella parvula HOM05D004874 ORTHO05D006796 0.0e+00 2350.1 1269 91.3
BcaB08g35028 Brassica carinata HOM05D004874 ORTHO05D006796 0.0e+00 2347.4 1272 91.2
Thhalv10000015m.g Eutrema salsugineum HOM05D004874 ORTHO05D006796 0.0e+00 2343.5 1269 91.4
BolC8t51674H Brassica oleracea HOM05D004874 ORTHO05D006796 0.0e+00 2340.5 1277 91.1
BcaC07g41106 Brassica carinata HOM05D004874 ORTHO05D006796 0.0e+00 2339.7 1274 91.1
C08p41080 Brassica napus HOM05D004874 ORTHO05D006796 0.0e+00 2339.3 1274 91.2
A09p57840 Brassica napus HOM05D004874 ORTHO05D006796 0.0e+00 2322.0 1276 90.5
BraA09t41177Z Brassica rapa HOM05D004874 ORTHO05D006796 0.0e+00 2314.7 1279 90.1
THA.LOC104804146 Tarenaya hassleriana HOM05D004874 ORTHO05D006796 0.0e+00 2074.3 1274 79.7
Aa31LG7G14640 Aethionema arabicum HOM05D004874 ORTHO05D006796 0.0e+00 2018.8 1272 79.3
Ciclev10024728m.g Citrus clementina HOM05D004874 ORTHO05D006796 0.0e+00 1848.2 1277 70.3
Thecc.01G111200 Theobroma cacao HOM05D004874 ORTHO05D006796 0.0e+00 1827.0 1280 69.8
Gorai.011G111800 Gossypium raimondii HOM05D004874 ORTHO05D006796 0.0e+00 1810.8 1280 69.1
Atru.chr4.387 Acer truncatum HOM05D004874 ORTHO05D006796 0.0e+00 1808.5 1275 70.0
Gohir.D10G102100 Gossypium hirsutum HOM05D004874 ORTHO05D006796 0.0e+00 1805.4 1280 69.0
Gohir.A10G086600 Gossypium hirsutum HOM05D004874 ORTHO05D006796 0.0e+00 1799.3 1280 68.9
TWI74G1507 Tripterygium wilfordii HOM05D004874 ORTHO05D006796 0.0e+00 1768.4 1281 67.6
Phvul.009G140100 Phaseolus vulgaris HOM05D004874 ORTHO05D006796 0.0e+00 1765.7 1277 67.6
QL06p032401 Quercus lobata HOM05D004874 ORTHO05D006796 0.0e+00 1762.7 1279 67.7
Glyma.06G145900 Glycine max HOM05D004874 ORTHO05D006796 0.0e+00 1760.0 1276 67.4
Potri.005G083800 Populus trichocarpa HOM05D004874 ORTHO05D006796 0.0e+00 1759.6 1282 68.0
Sabra05G0068900 Salix brachista HOM05D004874 ORTHO05D006796 0.0e+00 1759.6 1289 68.1
Manes.13G077640 Manihot esculenta HOM05D004874 ORTHO05D006796 0.0e+00 1757.7 1280 68.4
Glyma.04G220000 Glycine max HOM05D004874 ORTHO05D006796 0.0e+00 1753.0 1276 66.9
MD15G1333600 Malus domestica HOM05D004874 ORTHO05D006796 0.0e+00 1741.1 1280 67.4
Potri.007G081900 Populus trichocarpa HOM05D004874 ORTHO05D006796 0.0e+00 1740.3 1285 67.5
CANSAT01G0647 Cannabis sativa HOM05D004874 ORTHO05D006796 0.0e+00 1739.5 1277 67.0
Prupe.6G174100 Prunus persica HOM05D004874 ORTHO05D006796 0.0e+00 1736.5 1280 67.7
Dinv19497 Davidia involucrata HOM05D004874 ORTHO05D006796 0.0e+00 1736.1 1279 67.6
VMungo1309G2704 Vigna mungo HOM05D004874 ORTHO05D006796 0.0e+00 1733.4 1278 66.2
RcHm_v2.0_Chr2g0116231 Rosa chinensis HOM05D004874 ORTHO05D006796 0.0e+00 1722.6 1280 66.8
FvH4_1g22150 Fragaria vesca HOM05D004874 ORTHO05D006796 0.0e+00 1716.8 1280 66.6
Lj1g0000337 Lotus japonicus HOM05D004874 ORTHO05D006796 0.0e+00 1711.8 1278 65.7
GSVIVG01022217001 Vitis vinifera HOM05D004874 ORTHO05D006796 0.0e+00 1706.8 1278 67.1
Medtr3g094770 Medicago truncatula HOM05D004874 ORTHO05D006796 0.0e+00 1705.3 1281 65.3
CSS0018271 Camellia sinensis var. sinensis HOM05D004874 ORTHO05D006796 0.0e+00 1704.5 1279 66.1
TPR.G23744 Trifolium pratense HOM05D004874 ORTHO05D006796 0.0e+00 1702.6 1280 64.9
FAN28G2703 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1699.9 1280 66.1
Psat5g065960 Pisum sativum HOM05D004874 ORTHO05D006796 0.0e+00 1697.6 1280 65.3
FAN23G3027 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1696.4 1280 66.2
Ca_16889_v3 Cicer arietinum L. HOM05D004874 ORTHO05D006796 0.0e+00 1694.9 1280 64.9
FAN26G2351 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1694.5 1280 66.2
Lalb_Chr11g0068041 Lupinus albus HOM05D004874 ORTHO05D006796 0.0e+00 1691.4 1281 65.3
Actinidia15577 Actinidia chinensis HOM05D004874 ORTHO05D006796 0.0e+00 1691.0 1279 65.0
FAN19G0866 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1690.6 1306 65.0
ClCG01G016180 Citrullus lanatus HOM05D004874 ORTHO05D006796 0.0e+00 1689.1 1278 66.0
arahy.Tifrunner.gnm1.ann1.ZQBN5H Arachis hypogaea HOM05D004874 ORTHO05D006796 0.0e+00 1685.2 1280 65.2
arahy.Tifrunner.gnm1.ann1.M2IALY Arachis hypogaea HOM05D004874 ORTHO05D006796 0.0e+00 1682.9 1280 65.0
CSS0002284 Camellia sinensis var. sinensis HOM05D004874 ORTHO05D006796 0.0e+00 1679.8 1283 65.2
Haze_25029 Corylus avellana HOM05D004874 ORTHO05D006796 0.0e+00 1675.2 1243 67.2
Nn5g28922 Nelumbo nucifera HOM05D004874 ORTHO05D006796 0.0e+00 1672.9 1279 64.9
CsaV3_6G042450 Cucumis sativus L. HOM05D004874 ORTHO05D006796 0.0e+00 1671.8 1277 65.0
Rhsim10G0151300 Rhododendron simsii HOM05D004874 ORTHO05D006796 0.0e+00 1661.7 1279 65.2
Manes.12G141800 Manihot esculenta HOM05D004874 ORTHO05D006796 0.0e+00 1657.1 1277 64.7
PSO541G0735 Papaver somniferum HOM05D004874 ORTHO05D006796 0.0e+00 1648.3 1281 63.9
Eucgr.H04838 Eucalyptus grandis HOM05D004874 ORTHO05D006796 0.0e+00 1644.4 1273 64.2
Sopen04g023580 Solanum pennellii HOM05D004874 ORTHO05D006796 0.0e+00 1633.6 1280 63.8
PSO675G8458 Papaver somniferum HOM05D004874 ORTHO05D006796 0.0e+00 1633.2 1281 63.3
Solyc04g054140.4 Solanum lycopersicum HOM05D004874 ORTHO05D006796 0.0e+00 1632.5 1282 63.7
Aqoxy6G00493 Aquilegia oxysepala HOM05D004874 ORTHO05D006796 0.0e+00 1625.9 1291 62.8
Oeu028379.4 Olea europaea HOM05D004874 ORTHO05D006796 0.0e+00 1622.1 1381 59.7
Peaxi162Scf00323g00112 Petunia axillaris HOM05D004874 ORTHO05D006796 0.0e+00 1619.8 1247 64.7
CAN.G1728.1 Capsicum annuum HOM05D004874 ORTHO05D006796 0.0e+00 1619.0 1276 62.9
Migut.H02425 Erythranthe guttata HOM05D004874 ORTHO05D006796 0.0e+00 1614.7 1283 63.1
ECA238G3208 Erigeron canadensis HOM05D004874 ORTHO05D006796 0.0e+00 1614.0 1278 62.3
Cc07_g16070 Coffea canephora HOM05D004874 ORTHO05D006796 0.0e+00 1613.6 1281 63.2
EL10Ac6g14746 Beta vulgaris HOM05D004874 ORTHO05D006796 0.0e+00 1605.9 1358 59.1
Lsat_1_v5_gn_2_65401 Lactuca sativa HOM05D004874 ORTHO05D006796 0.0e+00 1602.8 1283 62.1
HanXRQChr14g0446191 Helianthus annuus HOM05D004874 ORTHO05D006796 0.0e+00 1600.9 1281 61.4
Sed0015455 Sechium edule HOM05D004874 ORTHO05D006796 0.0e+00 1598.9 1277 63.0
PGR102G1404 Punica granatum HOM05D004874 ORTHO05D006796 0.0e+00 1592.4 1277 62.5
HanXRQChr10g0295251 Helianthus annuus HOM05D004874 ORTHO05D006796 0.0e+00 1580.5 1280 61.1
AUR62016271 Chenopodium quinoa HOM05D004874 ORTHO05D006796 0.0e+00 1557.7 1280 60.2
SGA_v2.0_scaffold2G01299 Striga asiatica HOM05D004874 ORTHO05D006796 0.0e+00 1557.3 1376 58.6
AUR62003312 Chenopodium quinoa HOM05D004874 ORTHO05D006796 0.0e+00 1555.4 1280 60.1
Lalb_Chr13g0296191 Lupinus albus HOM05D004874 ORTHO05D006796 0.0e+00 1549.3 1278 59.9
MELO3C007488.2 Cucumis melo HOM05D004874 ORTHO05D006796 0.0e+00 1544.3 1282 61.4
Hund19660 Selenicereus undatus HOM05D004874 ORTHO05D006796 0.0e+00 1536.9 1215 62.7
SalBow6G4347 Salvia bowleyana HOM05D004874 ORTHO05D006796 0.0e+00 1515.4 1182 63.7
TAR628G0415 Trochodendron aralioides HOM05D004874 ORTHO05D006796 0.0e+00 1499.6 1192 63.8
DCAR_014257 Daucus carota HOM05D004874 ORTHO05D006796 0.0e+00 1493.4 1271 59.4
ATR0564G436 Amborella trichopoda HOM05D004874 ORTHO05D006796 0.0e+00 1491.1 1275 59.4
Zm00001eb328050 Zea mays HOM05D004874 ORTHO05D006796 0.0e+00 1438.3 1280 56.4
TAR376G0110 Trochodendron aralioides HOM05D004874 ORTHO05D006796 0.0e+00 1427.9 1041 66.7
Nitab4.5_0000156g0190 Nicotiana tabacum HOM05D004874 ORTHO05D006796 0.0e+00 1398.3 1042 65.7
MD01G1017400 Malus domestica HOM05D004874 ORTHO05D006796 0.0e+00 1390.9 1035 67.2
CDE07G0820 Ceratophyllum demersum HOM05D004874 ORTHO05D006796 0.0e+00 1358.6 1278 54.5
PGSC0003DMG400012951 Solanum tuberosum HOM05D004874 ORTHO05D006796 0.0e+00 1352.8 1046 63.9
Duzib147G0760 Durio zibethinus HOM05D004874 ORTHO05D006796 0.0e+00 1346.3 1271 55.8
SEGI_33214 Sequoiadendron giganteum HOM05D004874 ORTHO05D006796 0.0e+00 1326.2 1274 53.1
unitig_899.g14600 Utricularia gibba HOM05D004874 ORTHO05D006796 0.0e+00 1290.0 1180 56.2
COL.COLO4_11028 Corchorus olitorius HOM05D004874 ORTHO05D006796 0.0e+00 1267.3 1275 54.2
CDE04G1796 Ceratophyllum demersum HOM05D004874 ORTHO05D006796 0.0e+00 1189.1 1228 51.4
Cpa.g.sc196.7 Carica papaya HOM05D004874 ORTHO05D006796 0.0e+00 1161.0 829 68.9
FAN01G2715 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1144.8 940 61.7
CiPaw.04G092800 Carya illinoinensis HOM05D004874 ORTHO05D006796 0.0e+00 1102.8 813 69.1
Ah.02g124400 Amaranthus hybridus HOM05D004874 ORTHO05D006796 0.0e+00 1102.0 876 61.5
Mapoly0047s0138 Marchantia polymorpha HOM05D004874 ORTHO05D006796 0.0e+00 1093.6 1322 46.3
Pp3c1_33900 Physcomitrium patens HOM05D004874 ORTHO05D006796 0.0e+00 1091.3 1274 46.6
Pp3c2_2760 Physcomitrium patens HOM05D004874 ORTHO05D006796 0.0e+00 1088.6 1328 46.5
Lj2C562G3 Lonicera japonica HOM05D004874 ORTHO05D006796 0.0e+00 1082.8 831 63.7
FAN06G3019 Fragaria x ananassa HOM05D004874 ORTHO05D006796 1.5e-309 1066.6 941 59.4
Pp3c17_14550 Physcomitrium patens HOM05D004874 ORTHO05D006796 6.9e-307 1057.7 1321 45.6
SMO143G0116 Selaginella moellendorffii HOM05D004874 ORTHO05D006796 7.6e-306 1054.3 1198 47.8
FAN06G4447 Fragaria x ananassa HOM05D004874 ORTHO05D006796 1.4e-296 1023.5 941 57.8
Oeu030684.1 Olea europaea HOM05D004874 ORTHO05D006796 7.1e-296 1021.1 767 66.1
MBI02_g13022_MAGBIO Magnolia biondii HOM05D004874 ORTHO05D006796 6.7e-294 1014.6 832 60.3
AagrBONN_evm.TU.Sc2ySwM_228.911 Anthoceros agrestis HOM05D004874 ORTHO05D006796 3.4e-290 1002.3 1143 48.8
vmacro12908 Vaccinium macrocarpon HOM05D004874 ORTHO05D006796 1.0e-281 974.2 777 61.5
MSTRG.2539 Avicennia marina HOM05D004874 ORTHO05D006796 8.2e-276 954.5 767 63.8
FAN10G0201 Fragaria x ananassa HOM05D004874 ORTHO05D006796 1.1e-261 907.5 691 65.7
CBR_g4334 Chara braunii HOM05D004874 ORTHO05D006796 2.6e-221 773.5 1517 34.9
HPP92_016848 Vanilla planifolia HOM05D004874 ORTHO05D006796 2.2e-212 743.8 629 60.1
FvH4_7g04730 Fragaria vesca HOM05D004874 ORTHO05D006796 2.9e-196 690.3 558 62.4
HPP92_016847 Vanilla planifolia HOM05D004874 ORTHO05D006796 2.4e-195 687.2 613 54.5
FAN03G2613 Fragaria x ananassa HOM05D004874 ORTHO05D006796 1.5e-189 667.9 501 67.9
Oeu030685.1 Olea europaea HOM05D004874 ORTHO05D006796 5.8e-181 639.4 501 61.1
Lj2A562T49 Lonicera japonica HOM05D004874 ORTHO05D006796 1.3e-175 621.7 474 66.5
Cpa.g.sc196.6 Carica papaya HOM05D004874 ORTHO05D006796 1.7e-124 451.8 330 68.5
MBI02_g44126_MAGBIO Magnolia biondii HOM05D004874 ORTHO05D006796 8.6e-124 449.5 372 63.4
Cc07_g14920 Coffea canephora HOM05D004874 ORTHO05D006796 2.3e-121 441.4 405 58.8
Ah.02g124390 Amaranthus hybridus HOM05D004874 ORTHO05D006796 4.4e-112 410.6 338 62.1
MCO16G187 Micromonas commoda HOM05D004874 ORTHO05D006796 1.5e-99 369.0 1433 26.4
Cre12.g519150 Chlamydomonas reinhardtii HOM05D004874 ORTHO05D006796 1.2e-85 322.8 1362 24.9
Os07g0626900 Oryza sativa ssp. japonica HOM05D004874 ORTHO05D006796 2.7e-77 295.0 265 56.6
Sabra07G0068700 Salix brachista HOM05D004874 ORTHO05D006796 1.3e-50 206.5 236 48.7
Nitab4.5_0010573g0010 Nicotiana tabacum HOM05D004874 ORTHO05D006796 2.4e-41 175.6 151 58.3
FvH4_7g04731 Fragaria vesca HOM05D004874 ORTHO05D006796 5.0e-39 167.9 156 58.3
Solyc05g055570.3 Solanum lycopersicum HOM05D004874 ORTHO05D014502 1.7e-26 126.3 112 58.0
HanXRQChr11g0324541 Helianthus annuus HOM05D004874 ORTHO05D006796 2.7e-24 119.0 76 72.4
BcaC09g48952 Brassica carinata HOM05D004874 ORTHO05D014502 2.9e-15 89.0 53 83.0
BcaC06g36156 Brassica carinata HOM05D004874 ORTHO05D014502 6.5e-15 87.8 53 81.1
Zm00001eb137300 Zea mays HOM05D004874 ORTHO05D006796 3.6e-13 82.0 67 58.2
BcaC04g21885 Brassica carinata HOM05D004874 ORTHO05D014502 4.7e-13 81.6 56 71.4
C07p07140 Brassica napus HOM05D004874 ORTHO05D014502 1.8e-12 79.7 48 81.2
C01p44130 Brassica napus HOM05D004874 ORTHO05D014502 3.0e-12 79.0 48 81.2
A01p36370 Brassica napus HOM05D004874 ORTHO05D014502 6.8e-12 77.8 48 79.2
A02p42430 Brassica napus HOM05D004874 ORTHO05D014502 6.8e-12 77.8 48 79.2
BolC7t41133H Brassica oleracea HOM05D004874 ORTHO05D014502 6.8e-12 77.8 48 79.2
BraA01t04208Z Brassica rapa HOM05D004874 ORTHO05D014502 6.8e-12 77.8 48 79.2
BraA02t09174Z Brassica rapa HOM05D004874 ORTHO05D014502 6.8e-12 77.8 48 79.2
C09p26200 Brassica napus HOM05D004874 ORTHO05D014502 1.2e-11 77.0 48 79.2
BolC9t55523H Brassica oleracea HOM05D004874 ORTHO05D014502 1.2e-11 77.0 48 79.2
Nitab4.5_0000904g0190 Nicotiana tabacum HOM05D004874 ORTHO05D006796 2.6e-11 75.9 46 76.1
HanXRQChr12g0385291 Helianthus annuus HOM05D004874 ORTHO05D006796 1.3e-10 73.6 44 79.5
Pp3c19_1530 Physcomitrium patens HOM05D003906 ORTHO05D004776 2.2e-10 72.8 105 37.1
PRCOL_00002342 Prasinoderma coloniale HOM05D003906 ORTHO05D004776 2.8e-10 72.4 117 38.5
HanXRQChr11g0341101 Helianthus annuus HOM05D004874 ORTHO05D006796 4.9e-10 71.6 48 68.8
A05p26160 Brassica napus HOM05D004874 ORTHO05D014502 1.1e-09 70.5 50 68.0
MCO11G679 Micromonas commoda HOM05D000032 ORTHO05D028824 7.0e-09 67.8 152 30.9
Cre09.g387801 Chlamydomonas reinhardtii HOM05D003906 ORTHO05D004776 2.0e-08 66.2 139 31.7
AagrBONN_evm.TU.Sc2ySwM_228.213 Anthoceros agrestis HOM05D004797 ORTHO05D005752 4.5e-08 65.1 179 32.4
MCO01G564 Micromonas commoda HOM05D003906 ORTHO05D004776 7.8e-08 64.3 119 29.4
Zm00001eb182000 Zea mays HOM05D003906 ORTHO05D004776 1.0e-07 63.9 132 28.8
Os03g0428000 Oryza sativa ssp. japonica HOM05D004874 ORTHO05D006796 2.3e-07 62.8 80 45.0
Migut.C01295 Erythranthe guttata HOM05D003906 ORTHO05D004776 3.8e-07 62.0 136 25.7
A03p45290 Brassica napus HOM05D004505 ORTHO05D005249 8.6e-07 60.8 41 73.2
Zm00001eb243840 Zea mays HOM05D003906 ORTHO05D004776 1.5e-06 60.1 117 31.6
Mapoly0036s0095 Marchantia polymorpha HOM05D004797 ORTHO05D005752 1.9e-06 59.7 198 29.3
Cre01.g007150 Chlamydomonas reinhardtii HOM05D003906 ORTHO05D004776 7.3e-06 57.8 87 35.6


User provided reference genes

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