Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G05720 Arabidopsis thaliana HOM05D003639 ORTHO05D004246 2.7e-131 472.2 277 100.0
Carub.0004s0611 Capsella rubella HOM05D003639 ORTHO05D004246 2.3e-66 256.5 329 58.4
Thhalv10016457m.g Eutrema salsugineum HOM05D003639 ORTHO05D004246 1.9e-65 253.4 329 58.4
Thhalv10000860m.g Eutrema salsugineum HOM05D003639 ORTHO05D004246 2.5e-65 253.1 329 58.1
AL4G39590 Arabidopsis lyrata HOM05D003639 ORTHO05D004246 9.6e-65 251.1 328 57.6
AT2G41500 Arabidopsis thaliana HOM05D003639 ORTHO05D004246 2.1e-64 250.0 329 57.4
CARHR136620 Cardamine hirsuta HOM05D003639 ORTHO05D004246 2.1e-64 250.0 329 57.4
A04p31660 Brassica napus HOM05D003639 ORTHO05D004246 1.1e-63 247.7 329 56.8
C04p69090 Brassica napus HOM05D003639 ORTHO05D004246 1.1e-63 247.7 329 56.8
BolC4t28406H Brassica oleracea HOM05D003639 ORTHO05D004246 1.1e-63 247.7 329 56.8
BraA04t18624Z Brassica rapa HOM05D003639 ORTHO05D004246 1.1e-63 247.7 329 56.8
Sp4g23770 Schrenkiella parvula HOM05D003639 ORTHO05D004246 3.1e-63 246.1 329 57.4
A05p02320 Brassica napus HOM05D003639 ORTHO05D004246 4.1e-63 245.7 329 56.8
BolC4t21916H Brassica oleracea HOM05D003639 ORTHO05D004246 1.5e-62 243.8 329 56.2
BraA05t19227Z Brassica rapa HOM05D003639 ORTHO05D004246 2.0e-62 243.4 329 56.5
C04p02760 Brassica napus HOM05D003639 ORTHO05D004246 2.6e-62 243.0 329 56.2
BcaC02g12784 Brassica carinata HOM05D003639 ORTHO05D004246 2.1e-59 233.4 324 55.6
THA.LOC104824426 Tarenaya hassleriana HOM05D003639 ORTHO05D004246 4.1e-55 219.2 329 51.4
Aa31LG1G23520 Aethionema arabicum HOM05D003639 ORTHO05D004246 5.9e-54 215.3 144 76.4
BcaB06g29187 Brassica carinata HOM05D003639 ORTHO05D004246 2.9e-53 213.0 144 77.1
unitig_44.g31550 Utricularia gibba HOM05D003639 ORTHO05D004246 5.0e-53 212.2 302 47.7
AL3G43260 Arabidopsis lyrata HOM05D003639 ORTHO05D004246 2.1e-51 206.8 270 58.5
BcaNung04072 Brassica carinata HOM05D003639 ORTHO05D004246 2.0e-49 200.3 146 74.0
BcaNung06794 Brassica carinata HOM05D003639 ORTHO05D004246 6.9e-47 191.8 144 70.8
Cpa.g.sc120.6 Carica papaya HOM05D003639 ORTHO05D004246 3.0e-42 176.4 330 42.7
MELO3C019779.2 Cucumis melo HOM05D003639 ORTHO05D004246 3.7e-40 169.5 250 52.4
TWI74G0834 Tripterygium wilfordii HOM05D003639 ORTHO05D004246 1.1e-39 167.9 144 61.1
Thecc.02G139000 Theobroma cacao HOM05D003639 ORTHO05D004246 4.1e-39 166.0 143 59.4
CSS0037940 Camellia sinensis var. sinensis HOM05D003639 ORTHO05D004246 1.2e-38 164.5 298 35.9
Hma1.2p1_0338F.1_g129500 Hydrangea macrophylla HOM05D003639 ORTHO05D004246 1.2e-38 164.5 327 42.5
Haze_19749 Corylus avellana HOM05D003639 ORTHO05D004246 1.7e-37 160.6 184 46.2
PGR004G0521 Punica granatum HOM05D003639 ORTHO05D004246 2.9e-37 159.8 143 59.4
Duzib132G0222 Durio zibethinus HOM05D003639 ORTHO05D004246 1.1e-36 157.9 143 57.3
TAR065G0005 Trochodendron aralioides HOM05D003639 ORTHO05D004246 1.9e-36 157.1 144 56.9
Solyc04g016510.3 Solanum lycopersicum HOM05D003639 ORTHO05D004246 2.5e-36 156.8 327 41.6
TAR369G0628 Trochodendron aralioides HOM05D003639 ORTHO05D004246 2.5e-36 156.8 144 56.9
Hma1.2p1_2162F.1_g315680 Hydrangea macrophylla HOM05D003639 ORTHO05D004246 3.2e-36 156.4 142 57.7
Medtr3g045130 Medicago truncatula HOM05D003639 ORTHO05D004246 4.2e-36 156.0 312 43.9
PGSC0003DMG400012703 Solanum tuberosum HOM05D003639 ORTHO05D004246 4.2e-36 156.0 327 41.3
Actinidia39194 Actinidia chinensis HOM05D003639 ORTHO05D004246 5.5e-36 155.6 143 55.2
AUR62026120 Chenopodium quinoa HOM05D003639 ORTHO05D004246 7.2e-36 155.2 144 56.2
Ah.13g076790 Amaranthus hybridus HOM05D003639 ORTHO05D004246 9.4e-36 154.8 144 56.9
SalBow6G0945 Salvia bowleyana HOM05D003639 ORTHO05D004246 1.6e-35 154.1 143 53.8
Sopen04g008580 Solanum pennellii HOM05D003639 ORTHO05D004246 1.6e-35 154.1 327 41.3
Os03g0355200 Oryza sativa ssp. japonica HOM05D003639 ORTHO05D004246 2.7e-35 153.3 143 56.6
Os03g0355400 Oryza sativa ssp. japonica HOM05D003639 ORTHO05D004246 2.7e-35 153.3 143 56.6
Rhsim03G0032000 Rhododendron simsii HOM05D003639 ORTHO05D004246 2.7e-35 153.3 142 55.6
Duzib248G1450 Durio zibethinus HOM05D003639 ORTHO05D004246 3.6e-35 152.9 143 55.9
Potri.016G042250 Populus trichocarpa HOM05D003639 ORTHO05D004246 4.7e-35 152.5 296 35.8
EL10Ac3g07157 Beta vulgaris HOM05D003639 ORTHO05D004246 6.1e-35 152.1 144 53.5
Peaxi162Scf00130g00929 Petunia axillaris HOM05D003639 ORTHO05D004246 6.1e-35 152.1 327 40.7
GSVIVG01033551001 Vitis vinifera HOM05D003639 ORTHO05D004246 6.1e-35 152.1 144 54.9
COL.COLO4_24957 Corchorus olitorius HOM05D003639 ORTHO05D004246 8.0e-35 151.8 144 54.9
Hma1.2p1_1333F.1_g276240 Hydrangea macrophylla HOM05D003639 ORTHO05D004246 8.0e-35 151.8 144 55.6
arahy.Tifrunner.gnm1.ann1.6W6BYV Arachis hypogaea HOM05D003639 ORTHO05D004246 1.0e-34 151.4 143 56.6
arahy.Tifrunner.gnm1.ann1.Y8CJQK Arachis hypogaea HOM05D003639 ORTHO05D004246 1.0e-34 151.4 143 56.6
CSS0048368 Camellia sinensis var. sinensis HOM05D003639 ORTHO05D004246 1.0e-34 151.4 143 54.5
Manes.09G015900 Manihot esculenta HOM05D003639 ORTHO05D004246 1.0e-34 151.4 140 56.4
QL07p005224 Quercus lobata HOM05D003639 ORTHO05D004246 1.4e-34 151.0 143 55.9
AUR62024528 Chenopodium quinoa HOM05D003639 ORTHO05D004246 1.8e-34 150.6 144 54.9
SGA_v2.0_scaffold69G23129 Striga asiatica HOM05D003639 ORTHO05D004246 2.3e-34 150.2 308 33.1
Nn7g37752 Nelumbo nucifera HOM05D003639 ORTHO05D004246 3.0e-34 149.8 142 55.6
CsaV3_6G036200 Cucumis sativus L. HOM05D003639 ORTHO05D004246 4.0e-34 149.4 142 55.6
ClCG08G008940 Citrullus lanatus HOM05D003639 ORTHO05D004246 5.2e-34 149.1 142 56.3
MELO3C026433.2 Cucumis melo HOM05D003639 ORTHO05D004246 5.2e-34 149.1 142 55.6
Sc19g0008460 Simmondsia chinensis HOM05D003639 ORTHO05D004246 5.2e-34 149.1 140 55.7
Lsat_1_v5_gn_4_41600 Lactuca sativa HOM05D003639 ORTHO05D004246 6.7e-34 148.7 142 52.8
MBI13_g04793_MAGBIO Magnolia biondii HOM05D003639 ORTHO05D004246 6.7e-34 148.7 142 54.9
Nitab4.5_0001618g0260 Nicotiana tabacum HOM05D003639 ORTHO05D004246 6.7e-34 148.7 141 54.6
Phvul.007G249600 Phaseolus vulgaris HOM05D003639 ORTHO05D004246 1.2e-33 147.9 143 57.3
RcHm_v2.0_Chr3g0484331 Rosa chinensis HOM05D003639 ORTHO05D004246 2.0e-33 147.1 142 52.1
VMungo0720G2842 Vigna mungo HOM05D003639 ORTHO05D004246 2.0e-33 147.1 143 56.6
DCAR_014011 Daucus carota HOM05D003639 ORTHO05D004246 2.6e-33 146.7 143 51.0
FAN09G0054 Fragaria x ananassa HOM05D003639 ORTHO05D004246 2.6e-33 146.7 142 52.8
FAN05G0107 Fragaria x ananassa HOM05D003639 ORTHO05D004246 3.3e-33 146.4 142 53.5
FAN14G4828 Fragaria x ananassa HOM05D003639 ORTHO05D004246 3.3e-33 146.4 142 53.5
Aqoxy3G00063 Aquilegia oxysepala HOM05D003639 ORTHO05D004246 4.4e-33 146.0 143 53.8
MD12G1086300 Malus domestica HOM05D003639 ORTHO05D004246 4.4e-33 146.0 140 52.9
Lj5g0008946 Lotus japonicus HOM05D003639 ORTHO05D004246 7.5e-33 145.2 141 54.6
RcHm_v2.0_Chr3g0484501 Rosa chinensis HOM05D003639 ORTHO05D004246 7.5e-33 145.2 249 33.7
FvH4_6g24750 Fragaria vesca HOM05D003639 ORTHO05D004246 2.2e-32 143.7 142 52.8
PSO063G3048 Papaver somniferum HOM05D003639 ORTHO05D004246 2.8e-32 143.3 141 51.8
CAN.G1237.4 Capsicum annuum HOM05D003639 ORTHO05D004246 3.7e-32 142.9 142 51.4
Cc06_g18350 Coffea canephora HOM05D003639 ORTHO05D004246 3.7e-32 142.9 140 53.6
Migut.J01707 Erythranthe guttata HOM05D003639 ORTHO05D004246 3.7e-32 142.9 144 51.4
Psat6g009840 Pisum sativum HOM05D003639 ORTHO05D004246 4.8e-32 142.5 141 55.3
Prupe.7G050300 Prunus persica HOM05D003639 ORTHO05D004246 8.2e-32 141.7 140 52.1
Hund19126 Selenicereus undatus HOM05D003639 ORTHO05D004246 8.2e-32 141.7 144 52.8
TPR.G10246 Trifolium pratense HOM05D003639 ORTHO05D004246 1.1e-31 141.4 141 53.9
PSO832G3057 Papaver somniferum HOM05D003639 ORTHO05D004246 1.4e-31 141.0 141 51.1
Nitab4.5_0000826g0140 Nicotiana tabacum HOM05D003639 ORTHO05D004246 2.4e-31 140.2 150 51.3
Gohir.D12G015400 Gossypium hirsutum HOM05D003639 ORTHO05D004246 3.1e-31 139.8 143 53.1
SGA_v2.0_scaffold296G47577 Striga asiatica HOM05D003639 ORTHO05D004246 3.1e-31 139.8 143 51.0
Glyma.02G190600 Glycine max HOM05D003639 ORTHO05D004246 5.3e-31 139.0 142 54.9
Lalb_Chr21g0305241 Lupinus albus HOM05D003639 ORTHO05D004246 5.3e-31 139.0 141 53.2
Peaxi162Scf00177g10117 Petunia axillaris HOM05D003639 ORTHO05D004246 5.3e-31 139.0 144 50.7
Ca_25791_v3 Cicer arietinum L. HOM05D003639 ORTHO05D004246 7.0e-31 138.7 141 53.9
Glyma.10G000800 Glycine max HOM05D003639 ORTHO05D004246 7.0e-31 138.7 142 55.6
Gohir.A12G015000 Gossypium hirsutum HOM05D003639 ORTHO05D004246 9.1e-31 138.3 143 52.4
Gorai.008G015500 Gossypium raimondii HOM05D003639 ORTHO05D004246 9.1e-31 138.3 143 52.4
ECA234G2577 Erigeron canadensis HOM05D003639 ORTHO05D004246 1.2e-30 137.9 143 50.3
FAN02G3905 Fragaria x ananassa HOM05D003639 ORTHO05D004246 2.0e-30 137.1 136 52.2
Oeu023136.1 Olea europaea HOM05D003639 ORTHO05D004246 2.0e-30 137.1 143 51.7
SEGI_17823 Sequoiadendron giganteum HOM05D003639 ORTHO05D004246 2.0e-30 137.1 145 49.7
TPR.G1512 Trifolium pratense HOM05D003639 ORTHO05D004246 2.0e-30 137.1 137 54.0
Potri.006G045800 Populus trichocarpa HOM05D003639 ORTHO05D004246 5.9e-30 135.6 144 52.1
Ciclev10006458m.g Citrus clementina HOM05D003639 ORTHO05D004246 1.3e-29 134.4 144 49.3
MSTRG.6401 Avicennia marina HOM05D003639 ORTHO05D004246 2.9e-29 133.3 143 47.6
VMungo0540G1675 Vigna mungo HOM05D003639 ORTHO05D004246 2.9e-29 133.3 144 50.7
ATR0665G145 Amborella trichopoda HOM05D003639 ORTHO05D004246 3.8e-29 132.9 141 47.5
Mapoly0061s0123 Marchantia polymorpha HOM05D003639 ORTHO05D004246 6.5e-29 132.1 185 43.2
CDE04G0356 Ceratophyllum demersum HOM05D003639 ORTHO05D004246 5.5e-28 129.0 141 49.6
Sed0002463 Sechium edule HOM05D003639 ORTHO05D004246 9.4e-28 128.3 142 51.4
Medtr5g022690 Medicago truncatula HOM05D003639 ORTHO05D004246 1.2e-27 127.9 170 47.6
Psat6g118240 Pisum sativum HOM05D003639 ORTHO05D004246 1.2e-27 127.9 135 51.9
CiPaw.09G042100 Carya illinoinensis HOM05D003639 ORTHO05D004246 2.1e-27 127.1 142 50.0
unitig_578.g16292 Utricularia gibba HOM05D003639 ORTHO05D004246 2.1e-27 127.1 327 37.9
HPP92_010189 Vanilla planifolia HOM05D003639 ORTHO05D004246 2.7e-27 126.7 327 36.4
MD14G1080500 Malus domestica HOM05D003639 ORTHO05D004246 3.6e-27 126.3 142 47.9
HPP92_010210 Vanilla planifolia HOM05D000527 ORTHO05D000559 4.7e-27 125.9 327 36.1
CANSAT80G2101 Cannabis sativa HOM05D003639 ORTHO05D004246 1.4e-26 124.4 143 49.0
Dinv30299 Davidia involucrata HOM05D003639 ORTHO05D004246 1.8e-26 124.0 114 56.1
CANSAT80G0359 Cannabis sativa HOM05D003639 ORTHO05D004246 6.8e-26 122.1 142 48.6
Mapoly0014s0154 Marchantia polymorpha HOM05D003639 ORTHO05D004246 2.0e-25 120.6 193 40.9
CBR_g723 Chara braunii HOM05D003639 ORTHO05D004246 4.4e-25 119.4 191 37.7
Eucgr.A02297 Eucalyptus grandis HOM05D003639 ORTHO05D004246 2.8e-24 116.7 146 47.3
Pp3c9_11970 Physcomitrium patens HOM05D003639 ORTHO05D004246 8.3e-24 115.2 191 37.2
AagrBONN_evm.TU.Sc2ySwM_117.1154 Anthoceros agrestis HOM05D003639 ORTHO05D004246 1.8e-23 114.0 191 36.1
Sed0000547 Sechium edule HOM05D003639 ORTHO05D004246 1.8e-23 114.0 112 55.4
RcHm_v2.0_Chr3g0484401 Rosa chinensis HOM05D003639 ORTHO05D004246 3.5e-22 109.8 106 51.9
SMO356G0612 Selaginella moellendorffii HOM05D003639 ORTHO05D004246 4.7e-19 99.4 113 48.7
BcaNung04071 Brassica carinata HOM05D003639 ORTHO05D004246 5.4e-15 85.9 114 49.1
Lj4C34T1 Lonicera japonica HOM05D003639 ORTHO05D004246 2.0e-14 84.0 96 46.9
BcaC02g12785 Brassica carinata HOM05D003639 ORTHO05D004246 7.7e-14 82.0 66 71.2
Zm00001eb017050 Zea mays HOM05D003639 ORTHO05D004246 1.7e-13 80.9 81 50.6
Atru.chr6.1380 Acer truncatum HOM05D003639 ORTHO05D004246 5.0e-13 79.3 111 39.6
vmacro21947 Vaccinium macrocarpon HOM05D003639 ORTHO05D004246 9.5e-12 75.1 176 30.1
Sabra06G0031300 Salix brachista HOM05D003639 ORTHO05D004246 1.2e-11 74.7 144 37.5
Carub.0004s2380 Capsella rubella HOM05D003639 ORTHO05D004246 1.0e-10 71.6 100 63.0
Atru.chr6.1379 Acer truncatum HOM05D003639 ORTHO05D004246 3.0e-10 70.1 69 53.6
Atru.chr1.1191 Acer truncatum HOM05D003639 ORTHO05D004246 5.2e-10 69.3 71 52.1
BcaC01g05332 Brassica carinata HOM05D003639 ORTHO05D004246 8.9e-10 68.6 41 80.5
C03p27810 Brassica napus HOM05D003639 ORTHO05D004246 8.9e-10 68.6 41 80.5
BolC3t15153H Brassica oleracea HOM05D003639 ORTHO05D004246 8.9e-10 68.6 41 80.5
Cre16.g662800 Chlamydomonas reinhardtii HOM05D003639 ORTHO05D004246 9.8e-09 65.1 99 36.4
Oeu059397.1 Olea europaea HOM05D003335 ORTHO05D003853 7.0e-07 58.9 156 26.3
Atru.chr1.1192 Acer truncatum HOM05D003639 ORTHO05D004246 3.5e-06 56.6 53 54.7
CAN.G220.75 Capsicum annuum HOM05D003335 ORTHO05D003853 3.5e-06 56.6 158 29.1
COL.COLO4_13929 Corchorus olitorius HOM05D003639 ORTHO05D004246 3.5e-06 56.6 42 57.1
Os07g0572000 Oryza sativa ssp. japonica HOM05D002943 ORTHO05D002685 3.5e-06 56.6 108 34.3
Psat6g109160 Pisum sativum HOM05D003335 ORTHO05D003853 3.5e-06 56.6 149 26.8
Rhsim02G0043500 Rhododendron simsii HOM05D003335 ORTHO05D003853 4.6e-06 56.2 134 26.9
Lsat_1_v5_gn_1_75641 Lactuca sativa HOM05D003335 ORTHO05D003853 5.9e-06 55.8 158 28.5
Nitab4.5_0002751g0050 Nicotiana tabacum HOM05D003335 ORTHO05D003853 7.8e-06 55.5 158 28.5
Zm00001eb344450 Zea mays HOM05D003639 ORTHO05D004246 7.8e-06 55.5 50 54.0


User provided reference genes

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