Gene: Nitab4.5_0002751g0050

General Information

Structural Information

  • Species Nicotiana tabacum
  • Gene Identifier Nitab4.5_0002751g0050
  • Transcript Identifier Nitab4.5_0002751g0050.1
  • Gene Type Coding gene
  • Location Nitab4.5_0002751 : 301347-311773 : positive

Gene Family Information

  • ID HOM05D003335
  • #Genes/#Species 205/99
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Nitab4.5_0002751g0050.1
  • SR1-identifier Nta01g28740.1

Descriptions

  • Description WD40 repeat, Pre-mRNA-splicing factor 19, Zinc finger, RING/FYVE/PHD-type, WD40-repeat-containing domain, U box domain, WD40/YVTN repeat-like-containing domain
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016567
IEA
InterProprotein ubiquitination
GO:0000398
IEA
InterPromRNA splicing, via spliceosome
GO:0006281
IEA
InterProDNA repair
GO:0046686
ISO
PLAZA Integrative Orthologyresponse to cadmium ion AT1G04510
GO:0042742
ISO
PLAZA Integrative Orthologydefense response to bacterium AT1G04510

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0004842
IEA
InterProubiquitin-protein transferase activity
GO:0061630
IEA
InterProubiquitin protein ligase activity
GO:0005515
IEA
InterProprotein binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000974
IEA
InterProPrp19 complex
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT1G04510
GO:0005618
ISO
PLAZA Integrative Orthologycell wall AT2G33340
GO:0005730
ISO
PLAZA Integrative Orthologynucleolus AT1G04510

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR003613 U box domain
IPR013915 Pre-mRNA-splicing factor 19
IPR038959 Pre-mRNA-processing factor 19
IPR001680 WD40 repeat
IPR015943 WD40/YVTN repeat-like-containing domain superfamily
IPR036322 WD40-repeat-containing domain superfamily
IPR013083 Zinc finger, RING/FYVE/PHD-type
Mapman id Description
16.2.5.1.4 RNA processing.pre-mRNA splicing.spliceosome-associated non-snRNP MOS4-associated complex (MAC).core components.component MAC3