Gene: Potri.006G045800

General Information

Structural Information

Species Populus trichocarpa
Gene Identifier Potri.006G045800
Transcript Identifier Potri.006G045800.1
Gene Type Coding gene
Location Chr06 : 3102064-3105141 : negative

Gene Family Information

Homologous GF
Orthologous GF

ID HOM05D003639
#Genes/#Species 188/99
Phylogenetic origin

ID ORTHO05D004246
#Genes/#Species 186/99
Phylogenetic origin

Gene Duplication Information

Block Duplication Block duplicate

Labels

Identifiers

id Potri.006G045800.v4.1
pacid 42767342
synonym POPTR_0006s04430

Descriptions

Short descriptions
Ortholog descriptions

Description PTHR19846:SF0 - U4/U6 SMALL NUCLEAR RIBONUCLEOPROTEIN PRP4

Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0009560	ISO	PLAZA Integrative Orthology	embryo sac egg cell differentiation	AT2G41500
GO:0007267	ISO	PLAZA Integrative Orthology	cell-cell signaling	AT2G41500
GO:0009553	ISO	PLAZA Integrative Orthology	embryo sac development	AT2G41500
GO:0001709	ISO	PLAZA Integrative Orthology	cell fate determination	AT2G41500

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0005515	IEA	InterPro	protein binding

Cellular Component

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0016607	ISO	PLAZA Integrative Orthology	nuclear speck	AT2G41500

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR014906	Pre-mRNA processing factor 4 (PRP4)-like
IPR036322	WD40-repeat-containing domain superfamily
IPR001680	WD40 repeat
IPR015943	WD40/YVTN repeat-like-containing domain superfamily
IPR020472	G-protein beta WD-40 repeat
IPR036285	PRP4-like superfamily

Mapman id	Description
16.2.1.3.2	RNA processing.pre-mRNA splicing.U2-type-intron-specific major spliceosome.U4/U6 small nuclear ribonucleoprotein particle (snRNP).protein factor (PRPF4)