Gene: AT2G41500

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT2G41500
  • Transcript Identifier AT2G41500.1
  • Gene Type Coding gene
  • Location Chr2 : 17304319-17306855 : negative

Gene Family Information

  • ID HOM05D003639
  • #Genes/#Species 188/99
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT2G41500.1
  • symbol LIS
  • Alias EMB2776
  • full_name LACHESIS
  • uniprot O22212

Descriptions

  • Description WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-like protein
  • Computational description LACHESIS (LIS); CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), Pre-mRNA processing factor 4 (PRP4) like (InterPro:IPR014906), WD40 repeat (InterPro:IPR001680), Splicing factor motif (InterPro:IPR003648), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT2G05720.1); Has 96331 Blast hits to 36444 proteins in 930 species: Archae - 78; Bacteria - 11869; Metazoa - 38307; Fungi - 21059; Plants - 12275; Viruses - 15; Other Eukaryotes - 12728 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0008380
IEA
GOA DatabaseRNA splicing
GO:0006397
IEA
GOA DatabasemRNA processing
GO:0000398
ISS, IBA
Gene OntologymRNA splicing, via spliceosome1 2
GO:0009553
IMP
Gene Ontologyembryo sac development3
GO:0007267
IMP
Gene Ontologycell-cell signaling3
GO:0009560
IMP
Gene Ontologyembryo sac egg cell differentiation1
GO:0001709
IMP
Gene Ontologycell fate determination1

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
IEA
InterProprotein binding
GO:0030621
IBA
Gene OntologyU4 snRNA binding2
GO:0017070
IBA
Gene OntologyU6 snRNA binding2

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0046540
IBA
Gene OntologyU4/U6 x U5 tri-snRNP complex2
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
ISM
Gene Ontologynucleus
GO:0005681
IEA
GOA Databasespliceosomal complex
GO:0005681
ISS
Gene Ontologyspliceosomal complex1
GO:0016607
IEA
GOA Databasenuclear speck
GO:0016607
IDA
Gene Ontologynuclear speck4
GO:0080008
ISS
Gene OntologyCul4-RING E3 ubiquitin ligase complex5

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR036285 PRP4-like superfamily
IPR015943 WD40/YVTN repeat-like-containing domain superfamily
IPR001680 WD40 repeat
IPR020472 G-protein beta WD-40 repeat
IPR014906 Pre-mRNA processing factor 4 (PRP4)-like
IPR036322 WD40-repeat-containing domain superfamily
Mapman id Description
16.2.1.3.2 RNA processing.pre-mRNA splicing.U2-type-intron-specific major spliceosome.U4/U6 small nuclear ribonucleoprotein particle (snRNP).protein factor (PRPF4)