Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G75340 Arabidopsis thaliana HOM05D007201 ORTHO05D009122 1.4e-187 659.8 436 100.0
AL2G35270 Arabidopsis lyrata HOM05D007201 ORTHO05D009122 1.3e-161 573.5 443 82.6
Carub.0002s2218 Capsella rubella HOM05D007201 ORTHO05D009122 1.9e-155 553.1 443 71.3
Sp5g30480 Schrenkiella parvula HOM05D007201 ORTHO05D009122 2.8e-127 459.5 508 56.5
CARHR068690 Cardamine hirsuta HOM05D007201 ORTHO05D009122 1.3e-124 450.7 444 67.1
Thhalv10018711m.g Eutrema salsugineum HOM05D007201 ORTHO05D009122 1.3e-124 450.7 438 64.8
C06p49330 Brassica napus HOM05D007201 ORTHO05D009122 7.0e-110 401.7 453 58.1
BraA07t31630Z Brassica rapa HOM05D007201 ORTHO05D009122 9.1e-110 401.4 485 54.6
A07p40900 Brassica napus HOM05D007201 ORTHO05D009122 9.4e-107 391.3 453 58.5
BcaC08g47362 Brassica carinata HOM05D007201 ORTHO05D009122 3.1e-102 376.3 473 53.5
BolC6t39968H Brassica oleracea HOM05D007201 ORTHO05D009122 1.2e-96 357.8 452 49.6
Aa31LG4G5550 Aethionema arabicum HOM05D007201 ORTHO05D009122 1.6e-93 347.4 473 49.9
THA.LOC104809224 Tarenaya hassleriana HOM05D007201 ORTHO05D009122 4.1e-70 269.6 456 43.6
Gohir.D04G008200 Gossypium hirsutum HOM05D007201 ORTHO05D009122 3.5e-61 240.0 446 41.0
Gorai.012G009900 Gossypium raimondii HOM05D007201 ORTHO05D009122 2.5e-59 233.8 447 42.1
COL.COLO4_09000 Corchorus olitorius HOM05D007201 ORTHO05D009122 3.6e-58 229.9 468 38.5
QL11p005700 Quercus lobata HOM05D007201 ORTHO05D009122 1.4e-57 228.0 443 35.9
Thecc.09G202300 Theobroma cacao HOM05D007201 ORTHO05D009122 4.0e-57 226.5 451 37.5
Ciclev10008517m.g Citrus clementina HOM05D007201 ORTHO05D009122 1.5e-56 224.6 434 38.0
Cfa012872 Carpinus fangiana HOM05D007201 ORTHO05D009122 4.4e-56 223.0 460 38.3
CiPaw.15G000100 Carya illinoinensis HOM05D007201 ORTHO05D009122 6.4e-55 219.2 461 36.7
PSO339G5324 Papaver somniferum HOM05D007201 ORTHO05D009122 1.9e-54 217.6 449 38.3
MELO3C010035.2 Cucumis melo HOM05D007201 ORTHO05D009122 2.4e-54 217.2 446 36.8
Atru.chr7.298 Acer truncatum HOM05D007201 ORTHO05D009122 3.2e-54 216.9 437 36.8
HanXRQChr10g0309261 Helianthus annuus HOM05D007201 ORTHO05D009122 2.3e-52 210.7 250 56.0
PGR142G4385 Punica granatum HOM05D007201 ORTHO05D009122 1.5e-51 208.0 440 35.5
Haze_21242 Corylus avellana HOM05D007201 ORTHO05D009122 9.6e-51 205.3 463 36.9
CsaV3_1G044360 Cucumis sativus L. HOM05D007201 ORTHO05D009122 1.6e-50 204.5 447 36.2
TAR626G0209 Trochodendron aralioides HOM05D007201 ORTHO05D009122 6.2e-50 202.6 453 36.0
Glyma.11G109000 Glycine max HOM05D007201 ORTHO05D009122 1.1e-49 201.8 461 36.0
Manes.02G222200 Manihot esculenta HOM05D007201 ORTHO05D009122 1.8e-49 201.1 446 38.8
HPP92_017373 Vanilla planifolia HOM05D007201 ORTHO05D009122 2.0e-48 197.6 262 47.3
arahy.Tifrunner.gnm1.ann1.G7GJBK Arachis hypogaea HOM05D007201 ORTHO05D009122 3.4e-48 196.8 460 43.7
Eucgr.C00055 Eucalyptus grandis HOM05D007201 ORTHO05D009122 5.8e-48 196.1 459 38.1
DCAR_019970 Daucus carota HOM05D002293 ORTHO05D005475 7.6e-48 195.7 442 34.6
SHI24431 Sapria himalayana HOM05D007201 ORTHO05D009122 1.7e-47 194.5 247 48.6
MD04G1000600 Malus domestica HOM05D007201 ORTHO05D009122 2.2e-47 194.1 459 34.6
Nn8g41282 Nelumbo nucifera HOM05D007201 ORTHO05D009122 2.2e-47 194.1 458 33.8
Potri.006G081100 Populus trichocarpa HOM05D007201 ORTHO05D009122 3.8e-47 193.4 463 40.4
CSS0027843 Camellia sinensis var. sinensis HOM05D007201 ORTHO05D009122 1.1e-46 191.8 472 33.7
Phvul.011G018600 Phaseolus vulgaris HOM05D007201 ORTHO05D009122 1.1e-46 191.8 461 34.1
Hund22525 Selenicereus undatus HOM05D007201 ORTHO05D009122 1.1e-46 191.8 453 36.0
ECA240G0013 Erigeron canadensis HOM05D006383 ORTHO05D007815 1.4e-46 191.4 442 39.1
Solyc12g009390.2 Solanum lycopersicum HOM05D007201 ORTHO05D009122 1.9e-46 191.0 221 51.1
Rhsim03G0269700 Rhododendron simsii HOM05D007201 ORTHO05D009122 3.2e-46 190.3 462 33.3
Aqoxy7G02518 Aquilegia oxysepala HOM05D007201 ORTHO05D009122 7.1e-46 189.1 476 32.1
Sc10g0006090 Simmondsia chinensis HOM05D007201 ORTHO05D009122 7.1e-46 189.1 456 33.3
PGSC0003DMG400002893 Solanum tuberosum HOM05D007201 ORTHO05D009122 7.1e-46 189.1 221 50.7
CANSAT25G2467 Cannabis sativa HOM05D007201 ORTHO05D009122 9.3e-46 188.7 237 43.0
arahy.Tifrunner.gnm1.ann1.X4HTYC Arachis hypogaea HOM05D007201 ORTHO05D009122 1.2e-45 188.3 463 41.5
ECA234G1264 Erigeron canadensis HOM05D007201 ORTHO05D009122 1.2e-45 188.3 445 37.3
TPR.G28027 Trifolium pratense HOM05D007201 ORTHO05D009122 1.2e-45 188.3 455 37.6
Cc06_g23490 Coffea canephora HOM05D007201 ORTHO05D009122 3.5e-45 186.8 449 38.1
Sabra06G0061200 Salix brachista HOM05D007201 ORTHO05D009122 3.5e-45 186.8 470 35.5
Lsat_1_v5_gn_5_80700 Lactuca sativa HOM05D007201 ORTHO05D009122 6.0e-45 186.0 451 33.7
Lj3g0009807 Lotus japonicus HOM05D007201 ORTHO05D009122 6.0e-45 186.0 464 33.4
RcHm_v2.0_Chr4g0384751 Rosa chinensis HOM05D007201 ORTHO05D009122 7.8e-45 185.7 441 31.5
Cpa.g.sc46.114 Carica papaya HOM05D007201 ORTHO05D009122 2.3e-44 184.1 270 43.7
SEGI_05170 Sequoiadendron giganteum HOM05D007201 ORTHO05D009122 6.6e-44 182.6 242 40.9
Glyma.12G016400 Glycine max HOM05D007201 ORTHO05D009122 1.5e-43 181.4 460 33.5
FvH4_4g00131 Fragaria vesca HOM05D007201 ORTHO05D009122 1.9e-43 181.0 438 31.7
Prupe.1G000600 Prunus persica HOM05D007201 ORTHO05D009122 3.3e-43 180.3 462 33.1
FAN12G0236 Fragaria x ananassa HOM05D007201 ORTHO05D009122 5.6e-43 179.5 437 31.4
Sopen12g004380 Solanum pennellii HOM05D007201 ORTHO05D009122 9.6e-43 178.7 212 50.5
Lju50A20G7 Lonicera japonica HOM05D007201 ORTHO05D009122 1.6e-42 177.9 478 32.4
Psat7g169960 Pisum sativum HOM05D007201 ORTHO05D009122 1.6e-42 177.9 455 34.3
Actinidia03796 Actinidia chinensis HOM05D007201 ORTHO05D009122 2.1e-42 177.6 477 34.2
Medtr4g078160 Medicago truncatula HOM05D007201 ORTHO05D009122 3.6e-42 176.8 466 30.9
unitig_8.g3542 Utricularia gibba HOM05D007201 ORTHO05D009122 6.2e-42 176.0 246 44.3
EL10Ac2g03602 Beta vulgaris HOM05D007201 ORTHO05D009122 8.1e-42 175.6 475 38.9
Aqoxy37s001 Aquilegia oxysepala HOM05D007201 ORTHO05D009122 1.1e-41 175.3 242 41.3
VMungo1127G0228 Vigna mungo HOM05D007201 ORTHO05D009122 3.1e-41 173.7 469 32.8
CAN.G1591.3 Capsicum annuum HOM05D007201 ORTHO05D009122 4.0e-41 173.3 209 49.3
SGA_v2.0_scaffold21G09583 Striga asiatica HOM05D007201 ORTHO05D009122 6.9e-41 172.6 489 37.4
Lalb_Chr19g0140031 Lupinus albus HOM05D007201 ORTHO05D009122 1.2e-40 171.8 452 35.0
Peaxi162Scf00047g02450 Petunia axillaris HOM05D007201 ORTHO05D009122 2.0e-40 171.0 253 44.3
GSVIVG01034266001 Vitis vinifera HOM05D007201 ORTHO05D009122 3.4e-40 170.2 440 40.9
ATR0626G320 Amborella trichopoda HOM05D007201 ORTHO05D009122 5.8e-40 169.5 253 41.1
Nitab4.5_0000073g0490 Nicotiana tabacum HOM05D007201 ORTHO05D009122 1.4e-38 164.9 208 48.6
FAN12G1512 Fragaria x ananassa HOM05D007201 ORTHO05D009122 2.7e-37 160.6 262 37.4
Zm00001eb227240 Zea mays HOM05D007201 ORTHO05D009122 1.3e-36 158.3 262 46.2
vmacro22702 Vaccinium macrocarpon HOM05D007201 ORTHO05D009122 1.1e-35 155.2 542 27.3
AUR62027959 Chenopodium quinoa HOM05D007201 ORTHO05D009122 7.3e-35 152.5 243 42.4
CSS0027553 Camellia sinensis var. sinensis HOM05D007201 ORTHO05D009122 1.3e-34 151.8 138 53.6
CDE04G0352 Ceratophyllum demersum HOM05D007201 ORTHO05D009122 8.1e-34 149.1 228 38.6
Os06g0704300 Oryza sativa ssp. japonica HOM05D007201 ORTHO05D009122 3.1e-33 147.1 271 47.6
CSS0037159 Camellia sinensis var. sinensis HOM05D007201 ORTHO05D009122 9.0e-33 145.6 342 32.2
Nitab4.5_0004827g0030 Nicotiana tabacum HOM05D007201 ORTHO05D009122 4.9e-31 139.8 135 53.3
Pp3c7_12210 Physcomitrium patens HOM05D007201 ORTHO05D009122 1.3e-28 131.7 446 28.5
Duzib168G1263 Durio zibethinus HOM05D007201 ORTHO05D009122 1.5e-27 128.3 460 32.0
Mapoly0005s0044 Marchantia polymorpha HOM05D007201 ORTHO05D009122 3.7e-26 123.6 442 35.3
FAN17G0247 Fragaria x ananassa HOM05D007201 ORTHO05D009122 4.0e-25 120.2 84 59.5
FAN22G0406 Fragaria x ananassa HOM05D007201 ORTHO05D009122 1.0e-23 115.5 436 26.6
Dinv26498 Davidia involucrata HOM05D007201 ORTHO05D009122 8.4e-23 112.5 450 29.6
AagrBONN_evm.TU.Sc2ySwM_117.2509 Anthoceros agrestis HOM05D007201 ORTHO05D009122 3.2e-22 110.5 128 43.0
CBR_g15955 Chara braunii HOM05D007201 ORTHO05D009122 1.6e-18 98.2 251 31.5
Migut.L01609 Erythranthe guttata HOM05D007201 ORTHO05D009122 2.2e-15 87.8 230 34.3
Oeu000954.1 Olea europaea HOM05D007201 ORTHO05D009122 6.5e-15 86.3 299 28.8
Gohir.A05G407400 Gossypium hirsutum HOM05D007201 ORTHO05D009122 1.9e-11 74.7 277 36.5
CSS0006520 Camellia sinensis var. sinensis HOM05D007201 ORTHO05D009122 1.3e-07 62.0 50 52.0
CSS0048863 Camellia sinensis var. sinensis HOM05D007201 ORTHO05D009122 1.3e-07 62.0 50 52.0
ClCG03G010480 Citrullus lanatus HOM05D007201 ORTHO05D009122 1.4e-06 58.5 33 75.8
Ah.11g043520 Amaranthus hybridus HOM05D000145 ORTHO05D000115 1.9e-06 58.2 55 61.8
CSS0038290 Camellia sinensis var. sinensis HOM05D007201 ORTHO05D009122 2.5e-06 57.8 43 62.8
CSS0018491 Camellia sinensis var. sinensis HOM05D007201 ORTHO05D009122 3.2e-06 57.4 44 61.4


User provided reference genes

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