Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G54590 Arabidopsis thaliana HOM05D004820 ORTHO05D005946 1.6e-205 719.2 362 100.0
AL1G45340 Arabidopsis lyrata HOM05D004820 ORTHO05D005946 7.5e-134 481.1 283 87.3
AL1G12610 Arabidopsis lyrata HOM05D004820 ORTHO05D005946 3.7e-109 399.1 294 74.5
Carub.0001s0228 Capsella rubella HOM05D004820 ORTHO05D005946 6.4e-109 398.3 294 74.1
CARHR002470 Cardamine hirsuta HOM05D004820 ORTHO05D005946 8.3e-109 397.9 293 73.7
Thhalv10009621m.g Eutrema salsugineum HOM05D004820 ORTHO05D005946 1.4e-108 397.1 294 74.5
AT1G03140 Arabidopsis thaliana HOM05D004820 ORTHO05D005946 5.4e-108 395.2 294 73.8
Sp1g02160 Schrenkiella parvula HOM05D004820 ORTHO05D005946 3.3e-105 386.0 294 72.4
C08p52910 Brassica napus HOM05D004820 ORTHO05D005946 2.1e-104 383.3 291 71.8
BolC8t52807H Brassica oleracea HOM05D004820 ORTHO05D005946 2.8e-104 382.9 291 71.8
A09p68340 Brassica napus HOM05D004820 ORTHO05D005946 1.4e-103 380.6 292 70.9
BolC8t46841H Brassica oleracea HOM05D004820 ORTHO05D005946 5.2e-103 378.6 296 70.6
C08p00420 Brassica napus HOM05D004820 ORTHO05D005946 2.0e-102 376.7 296 70.3
A08p37470 Brassica napus HOM05D004820 ORTHO05D005946 2.6e-102 376.3 296 70.3
BraA08t35645Z Brassica rapa HOM05D004820 ORTHO05D005946 2.6e-102 376.3 296 70.3
Aa31LG1G9390 Aethionema arabicum HOM05D004820 ORTHO05D005946 4.9e-101 372.1 295 70.2
BcaC07g42265 Brassica carinata HOM05D004820 ORTHO05D005946 9.0e-95 351.3 258 74.0
Glyma.19G157200 Glycine max HOM05D004820 ORTHO05D005946 1.5e-94 350.5 296 66.2
Eucgr.K03365 Eucalyptus grandis HOM05D004820 ORTHO05D005946 3.4e-94 349.4 292 66.8
THA.LOC104801242 Tarenaya hassleriana HOM05D004820 ORTHO05D005946 3.4e-94 349.4 295 66.4
Medtr7g095000 Medicago truncatula HOM05D004820 ORTHO05D005946 7.6e-94 348.2 295 65.8
Glyma.03G155000 Glycine max HOM05D004820 ORTHO05D005946 1.7e-93 347.1 291 66.0
THA.LOC104815940 Tarenaya hassleriana HOM05D004820 ORTHO05D005946 4.9e-93 345.5 295 66.4
TWI14G0518 Tripterygium wilfordii HOM05D004820 ORTHO05D005946 8.4e-93 344.7 294 65.3
Psat3g064000 Pisum sativum HOM05D004820 ORTHO05D005946 1.4e-92 344.0 294 66.0
QL12p021397 Quercus lobata HOM05D004820 ORTHO05D005946 1.9e-92 343.6 296 64.9
Sc05g0005630 Simmondsia chinensis HOM05D004820 ORTHO05D005946 2.4e-92 343.2 292 65.8
TPR.G9917 Trifolium pratense HOM05D004820 ORTHO05D005946 2.4e-92 343.2 294 65.3
CANSAT25G3765 Cannabis sativa HOM05D004820 ORTHO05D005946 3.2e-92 342.8 295 64.4
arahy.Tifrunner.gnm1.ann1.JHLY8X Arachis hypogaea HOM05D004820 ORTHO05D005946 7.1e-92 341.7 290 64.8
arahy.Tifrunner.gnm1.ann1.NQ54M2 Arachis hypogaea HOM05D004820 ORTHO05D005946 7.1e-92 341.7 290 64.8
Ca_08606_v3 Cicer arietinum L. HOM05D004820 ORTHO05D005946 9.3e-92 341.3 289 66.4
CAN.G590.6 Capsicum annuum HOM05D004820 ORTHO05D005946 1.2e-91 340.9 290 64.8
TAR362G1079 Trochodendron aralioides HOM05D004820 ORTHO05D005946 1.2e-91 340.9 297 64.3
arahy.Tifrunner.gnm1.ann1.HALK3W Arachis hypogaea HOM05D004820 ORTHO05D005946 1.6e-91 340.5 290 64.5
CiPaw.08G106000 Carya illinoinensis HOM05D004820 ORTHO05D005946 1.6e-91 340.5 295 64.1
Atru.chr5.1456 Acer truncatum HOM05D004820 ORTHO05D005946 3.5e-91 339.3 290 65.5
Manes.01G206900 Manihot esculenta HOM05D004820 ORTHO05D005946 3.5e-91 339.3 294 65.0
PSO761G0350 Papaver somniferum HOM05D004820 ORTHO05D005946 3.5e-91 339.3 291 63.2
Solyc09g065280.4 Solanum lycopersicum HOM05D004820 ORTHO05D005946 4.6e-91 339.0 290 64.5
Sopen09g027030 Solanum pennellii HOM05D004820 ORTHO05D005946 4.6e-91 339.0 290 64.5
Actinidia00769 Actinidia chinensis HOM05D004820 ORTHO05D005946 6.0e-91 338.6 288 64.6
Cpa.g.sc52.45 Carica papaya HOM05D004820 ORTHO05D005946 6.0e-91 338.6 292 65.1
PSO210G1690 Papaver somniferum HOM05D004820 ORTHO05D005946 6.0e-91 338.6 295 62.0
Phvul.005G035400 Phaseolus vulgaris HOM05D004820 ORTHO05D005946 6.0e-91 338.6 290 64.5
PGSC0003DMG400019362 Solanum tuberosum HOM05D004820 ORTHO05D005946 6.0e-91 338.6 290 64.5
Lj4g0024215 Lotus japonicus HOM05D004820 ORTHO05D005946 7.8e-91 338.2 291 64.9
Nn4g26288 Nelumbo nucifera HOM05D004820 ORTHO05D005946 7.8e-91 338.2 292 64.7
SGA_v2.0_scaffold81G26015 Striga asiatica HOM05D004820 ORTHO05D005946 2.3e-90 336.7 290 64.5
VMungo1383G2933 Vigna mungo HOM05D004820 ORTHO05D005946 2.3e-90 336.7 290 64.1
Cc03_g10020 Coffea canephora HOM05D004820 ORTHO05D005946 3.0e-90 336.3 288 64.9
Gohir.D08G075000 Gossypium hirsutum HOM05D004820 ORTHO05D005946 3.9e-90 335.9 295 63.4
Gorai.004G216400 Gossypium raimondii HOM05D004820 ORTHO05D005946 3.9e-90 335.9 295 64.1
arahy.Tifrunner.gnm1.ann1.X2D3U2 Arachis hypogaea HOM05D004820 ORTHO05D005946 5.1e-90 335.5 294 62.6
Potri.005G210600 Populus trichocarpa HOM05D004820 ORTHO05D005946 5.1e-90 335.5 293 64.5
Ciclev10020348m.g Citrus clementina HOM05D004820 ORTHO05D005946 6.6e-90 335.1 294 63.6
Gohir.A08G186300 Gossypium hirsutum HOM05D004820 ORTHO05D005946 6.6e-90 335.1 295 63.7
Gohir.D08G204400 Gossypium hirsutum HOM05D004820 ORTHO05D005946 8.7e-90 334.7 295 63.7
Duzib211G0468 Durio zibethinus HOM05D004820 ORTHO05D005946 1.1e-89 334.3 295 64.1
MD03G1263300 Malus domestica HOM05D004820 ORTHO05D005946 1.1e-89 334.3 291 64.9
Oeu041704.1 Olea europaea HOM05D004820 ORTHO05D005946 1.5e-89 334.0 289 63.7
Prupe.8G239700 Prunus persica HOM05D004820 ORTHO05D005946 1.9e-89 333.6 291 63.9
Lalb_Chr06g0162971 Lupinus albus HOM05D004820 ORTHO05D005946 2.5e-89 333.2 292 64.4
Thecc.01G277300 Theobroma cacao HOM05D004820 ORTHO05D005946 4.3e-89 332.4 295 63.4
Migut.N02046 Erythranthe guttata HOM05D004820 ORTHO05D005946 5.6e-89 332.0 290 63.1
PGR044G0684 Punica granatum HOM05D004820 ORTHO05D005946 7.3e-89 331.6 292 64.7
MD11G1284100 Malus domestica HOM05D004820 ORTHO05D005946 9.6e-89 331.3 291 64.3
MSTRG.17449 Avicennia marina HOM05D004820 ORTHO05D005946 1.6e-88 330.5 293 63.5
CsaV3_7G028060 Cucumis sativus L. HOM05D004820 ORTHO05D005946 1.6e-88 330.5 290 62.8
EL10Ac8g18597 Beta vulgaris HOM05D004820 ORTHO05D005946 2.8e-88 329.7 290 63.8
Gohir.A08G066300 Gossypium hirsutum HOM05D004820 ORTHO05D005946 2.8e-88 329.7 295 62.0
Sed0001544 Sechium edule HOM05D004820 ORTHO05D005946 4.8e-88 328.9 290 62.1
Ah.01g024010 Amaranthus hybridus HOM05D004820 ORTHO05D005946 6.2e-88 328.6 329 56.2
HPP92_018354 Vanilla planifolia HOM05D004820 ORTHO05D005946 6.2e-88 328.6 291 60.5
Sabra05G0160800 Salix brachista HOM05D004820 ORTHO05D005946 8.1e-88 328.2 294 62.9
CSS0006431 Camellia sinensis var. sinensis HOM05D004820 ORTHO05D005946 1.4e-87 327.4 274 63.5
Gorai.004G079300 Gossypium raimondii HOM05D004820 ORTHO05D005946 1.4e-87 327.4 297 62.3
Lsat_1_v5_gn_5_187781 Lactuca sativa HOM05D004820 ORTHO05D005946 4.0e-87 325.9 271 64.9
Duzib138G0452 Durio zibethinus HOM05D004820 ORTHO05D005946 5.3e-87 325.5 273 65.6
MELO3C015826.2 Cucumis melo HOM05D004820 ORTHO05D005946 3.4e-86 322.8 295 61.7
FAN15G1635 Fragaria x ananassa HOM05D004820 ORTHO05D005946 4.5e-86 322.4 292 63.7
FAN20G0972 Fragaria x ananassa HOM05D004820 ORTHO05D005946 4.5e-86 322.4 292 63.7
AUR62012894 Chenopodium quinoa HOM05D004820 ORTHO05D005946 7.6e-86 321.6 288 62.2
RcHm_v2.0_Chr6g0290841 Rosa chinensis HOM05D004820 ORTHO05D005946 9.9e-86 321.2 293 63.8
FvH4_2g23380 Fragaria vesca HOM05D004820 ORTHO05D005946 2.9e-85 319.7 292 63.4
HanXRQChr01g0003021 Helianthus annuus HOM05D004820 ORTHO05D005946 3.8e-85 319.3 271 63.5
AUR62027118 Chenopodium quinoa HOM05D004820 ORTHO05D005946 8.4e-85 318.2 288 61.5
FAN27G0992 Fragaria x ananassa HOM05D004820 ORTHO05D005946 9.3e-84 314.7 301 61.8
SpUn0083_0020 Schrenkiella parvula HOM05D004820 ORTHO05D005946 2.1e-83 313.5 278 64.0
SEGI_11361 Sequoiadendron giganteum HOM05D004820 ORTHO05D005946 4.6e-83 312.4 287 60.3
FAN24G1940 Fragaria x ananassa HOM05D004820 ORTHO05D005946 2.3e-82 310.1 310 60.0
ECA248G2754 Erigeron canadensis HOM05D004820 ORTHO05D005946 5.1e-82 308.9 265 61.5
Zm00001eb324990 Zea mays HOM05D004820 ORTHO05D005946 7.4e-81 305.1 300 58.3
Os07g0571900 Oryza sativa ssp. japonica HOM05D004820 ORTHO05D005946 9.6e-81 304.7 299 57.9
Sp5g11480 Schrenkiella parvula HOM05D004820 ORTHO05D005946 3.7e-80 302.8 240 68.8
Lj4g0011679 Lotus japonicus HOM05D004820 ORTHO05D005946 8.1e-80 301.6 276 63.0
Zm00001eb426820 Zea mays HOM05D004820 ORTHO05D005946 1.4e-79 300.8 287 59.2
Zm00001eb426860 Zea mays HOM05D004820 ORTHO05D005946 6.9e-79 298.5 291 58.4
Mapoly0140s0012 Marchantia polymorpha HOM05D004820 ORTHO05D005946 1.2e-78 297.7 292 57.5
QL03p020183 Quercus lobata HOM05D004820 ORTHO05D005946 1.2e-78 297.7 258 64.7
Zm00001eb426810 Zea mays HOM05D004820 ORTHO05D005946 4.5e-78 295.8 287 58.5
Zm00001eb426800 Zea mays HOM05D004820 ORTHO05D005946 5.8e-78 295.4 289 57.4
Rhsim01G0274100 Rhododendron simsii HOM05D004820 ORTHO05D005946 3.2e-76 289.7 273 60.4
Zm00001eb426850 Zea mays HOM05D004820 ORTHO05D005946 3.9e-74 282.7 270 58.1
SMO356G0463 Selaginella moellendorffii HOM05D004820 ORTHO05D005946 5.1e-74 282.3 266 57.5
Pp3c21_19780 Physcomitrium patens HOM05D004820 ORTHO05D005946 6.7e-74 282.0 298 55.4
PGSC0003DMG400010602 Solanum tuberosum HOM05D004820 ORTHO05D005946 2.5e-73 280.0 272 59.6
PGSC0003DMG400010600 Solanum tuberosum HOM05D004820 ORTHO05D005946 2.8e-72 276.6 275 58.9
Lalb_Chr02g0142711 Lupinus albus HOM05D004820 ORTHO05D005946 6.2e-72 275.4 225 65.8
Zm00001eb216840 Zea mays HOM05D004820 ORTHO05D005946 5.1e-66 255.8 259 54.8
CBR_g23335 Chara braunii HOM05D004820 ORTHO05D005946 7.9e-59 231.9 318 44.7
Solyc07g052190.1 Solanum lycopersicum HOM05D004820 ORTHO05D005946 1.0e-58 231.5 227 59.0
Zm00001eb426870 Zea mays HOM05D004820 ORTHO05D005946 1.8e-58 230.7 171 70.8
COL.COLO4_09079 Corchorus olitorius HOM05D004820 ORTHO05D005946 3.3e-57 226.5 217 59.0
GSVIVG01001158001 Vitis vinifera HOM05D004820 ORTHO05D005946 9.7e-57 224.9 156 74.4
CAN.G198.19 Capsicum annuum HOM05D004820 ORTHO05D005946 2.1e-51 207.2 209 57.4
Sopen07g025700 Solanum pennellii HOM05D004820 ORTHO05D005946 1.7e-48 197.6 194 58.2
Cpa.g.sc52.46 Carica papaya HOM05D004820 ORTHO05D005946 9.1e-47 191.8 139 73.4
Sopen07g025830 Solanum pennellii HOM05D004820 ORTHO05D005946 1.5e-46 191.0 194 56.2
Solyc07g052050.2 Solanum lycopersicum HOM05D004820 ORTHO05D005946 4.5e-46 189.5 185 58.4
SHI31234 Sapria himalayana HOM05D004820 ORTHO05D005946 3.0e-42 176.8 116 76.7
Zm00001eb426830 Zea mays HOM05D004820 ORTHO05D005946 1.6e-38 164.5 119 74.8
HanXRQChr15g0487721 Helianthus annuus HOM05D004820 ORTHO05D005946 1.0e-37 161.8 164 51.8
Oeu028072.3 Olea europaea HOM05D004820 ORTHO05D005946 3.8e-37 159.8 155 58.1
Lj1g0027313 Lotus japonicus HOM05D004820 ORTHO05D005946 9.4e-36 155.2 159 54.7
Sopen07g025690 Solanum pennellii HOM05D004820 ORTHO05D005946 1.2e-35 154.8 123 66.7
MCO06G052 Micromonas commoda HOM05D004820 ORTHO05D005946 5.7e-33 146.0 157 47.1
SHI31236 Sapria himalayana HOM05D004820 ORTHO05D005946 1.8e-31 141.0 154 53.9
Cre13.g567750 Chlamydomonas reinhardtii HOM05D004820 ORTHO05D005946 1.2e-30 138.3 172 43.0
CARHR182160 Cardamine hirsuta HOM05D004820 ORTHO05D005946 7.5e-25 119.0 117 59.0
Os03g0701100 Oryza sativa ssp. japonica HOM05D004820 ORTHO05D005946 2.1e-19 100.9 138 44.2
TAR365G1077 Trochodendron aralioides HOM05D004820 ORTHO05D005946 2.3e-18 97.4 85 56.5
Sopen07g025610 Solanum pennellii HOM05D004820 ORTHO05D005946 4.0e-18 96.7 111 52.3
Zm00001eb180190 Zea mays HOM05D004820 ORTHO05D005946 7.0e-15 85.9 64 65.6
Gohir.D05G222300 Gossypium hirsutum HOM05D004820 ORTHO05D005946 3.5e-14 83.6 60 65.0
Zm00001eb017440 Zea mays HOM05D004820 ORTHO05D005946 3.5e-14 83.6 62 64.5
Zm00001eb078380 Zea mays HOM05D004820 ORTHO05D005946 3.5e-14 83.6 62 64.5
Zm00001eb368520 Zea mays HOM05D004820 ORTHO05D005946 5.9e-14 82.8 64 64.1
Gohir.D11G242500 Gossypium hirsutum HOM05D004820 ORTHO05D005946 1.0e-13 82.0 60 63.3
Gorai.009G229700 Gossypium raimondii HOM05D004820 ORTHO05D005946 1.0e-13 82.0 60 63.3
Gorai.011G187700 Gossypium raimondii HOM05D004820 ORTHO05D005946 5.0e-13 79.7 60 61.7
C06p09790 Brassica napus HOM05D004820 ORTHO05D001418 7.3e-12 75.9 46 73.9
BolC6t36051H Brassica oleracea HOM05D004820 ORTHO05D001418 7.3e-12 75.9 46 73.9
Nn4g23784 Nelumbo nucifera HOM05D004820 ORTHO05D005946 1.4e-10 71.6 109 41.3
BcaC08g43579 Brassica carinata HOM05D004820 ORTHO05D001418 5.4e-07 59.7 35 74.3
Nitab4.5_0003852g0050 Nicotiana tabacum HOM05D004820 ORTHO05D005946 5.4e-07 59.7 39 74.4


User provided reference genes

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