Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL8G11990 Arabidopsis lyrata HOM05D007300 ORTHO05D009301 0.0e+00 1292.7 655 100.0
AT5G46420 Arabidopsis thaliana HOM05D007300 ORTHO05D009301 0.0e+00 1189.1 655 92.1
Carub.0008s0147 Capsella rubella HOM05D007300 ORTHO05D009301 0.0e+00 1159.1 653 90.5
CARHR175340 Cardamine hirsuta HOM05D007300 ORTHO05D009301 0.0e+00 1142.9 657 90.1
Sp2g11270 Schrenkiella parvula HOM05D007300 ORTHO05D009301 0.0e+00 1140.2 658 88.4
Thhalv10000812m.g Eutrema salsugineum HOM05D007300 ORTHO05D009301 0.0e+00 1127.1 651 87.4
A06p45940 Brassica napus HOM05D007300 ORTHO05D009301 0.0e+00 1112.4 659 85.6
C07p29650 Brassica napus HOM05D007300 ORTHO05D009301 0.0e+00 1089.3 658 84.7
BolC7t43517H Brassica oleracea HOM05D007300 ORTHO05D009301 0.0e+00 1088.9 658 84.7
BraA06t27457Z Brassica rapa HOM05D007300 ORTHO05D009301 0.0e+00 1080.9 642 85.4
Aa31LG9G6430 Aethionema arabicum HOM05D007300 ORTHO05D009301 4.4e-294 1014.2 666 77.6
THA.LOC104827733 Tarenaya hassleriana HOM05D007300 ORTHO05D009301 4.6e-259 897.9 666 69.7
Cfa001024 Carpinus fangiana HOM05D007300 ORTHO05D009301 3.0e-181 639.4 679 51.8
CiPaw.10G096200 Carya illinoinensis HOM05D007300 ORTHO05D009301 5.6e-180 635.2 679 50.4
FvH4_3g06410 Fragaria vesca HOM05D007300 ORTHO05D009301 1.8e-178 630.2 668 50.7
QL05p060322 Quercus lobata HOM05D007300 ORTHO05D009301 4.0e-178 629.0 616 54.1
Prupe.4G073700 Prunus persica HOM05D007300 ORTHO05D009301 1.3e-176 624.0 683 50.1
Potri.001G353800 Populus trichocarpa HOM05D007300 ORTHO05D009301 1.7e-176 623.6 614 53.1
RcHm_v2.0_Chr5g0012901 Rosa chinensis HOM05D007300 ORTHO05D009301 2.9e-176 622.9 676 49.1
Thecc.06G157700 Theobroma cacao HOM05D007300 ORTHO05D009301 2.9e-176 622.9 681 50.7
Dinv32299 Davidia involucrata HOM05D007300 ORTHO05D009301 6.4e-176 621.7 665 50.5
FAN21G2574 Fragaria x ananassa HOM05D007300 ORTHO05D009301 8.4e-176 621.3 605 52.4
Gorai.011G040700 Gossypium raimondii HOM05D007300 ORTHO05D009301 1.2e-174 617.5 681 50.7
Gohir.D10G038600 Gossypium hirsutum HOM05D007300 ORTHO05D009301 3.5e-174 615.9 681 50.5
MD05G1291800 Malus domestica HOM05D007300 ORTHO05D009301 6.0e-174 615.1 698 48.9
GSVIVG01021378001 Vitis vinifera HOM05D007300 ORTHO05D009301 3.3e-172 609.4 673 48.7
TWI73G0852 Tripterygium wilfordii HOM05D007300 ORTHO05D009301 7.4e-172 608.2 681 48.6
Ciclev10014510m.g Citrus clementina HOM05D007300 ORTHO05D009301 8.1e-171 604.7 678 50.0
FAN11G2841 Fragaria x ananassa HOM05D007300 ORTHO05D009301 1.2e-169 600.9 729 46.5
Cpa.g.sc17.110 Carica papaya HOM05D007300 ORTHO05D009301 4.5e-169 599.0 638 50.6
CANSAT35G1474 Cannabis sativa HOM05D007300 ORTHO05D009301 3.8e-168 595.9 689 51.4
COL.COLO4_22798 Corchorus olitorius HOM05D007300 ORTHO05D009301 1.4e-167 594.0 675 50.1
Gohir.A10G037600 Gossypium hirsutum HOM05D007300 ORTHO05D009301 1.4e-167 594.0 688 49.3
Sabra16G0232700 Salix brachista HOM05D007300 ORTHO05D009301 1.2e-166 590.9 634 50.2
Haze_05485 Corylus avellana HOM05D007300 ORTHO05D009301 6.0e-166 588.6 707 47.2
CSS0020184 Camellia sinensis var. sinensis HOM05D007300 ORTHO05D009301 1.8e-165 587.0 607 50.2
Actinidia19486 Actinidia chinensis HOM05D007300 ORTHO05D009301 3.9e-165 585.9 608 51.2
Atru.chr10.1398 Acer truncatum HOM05D007300 ORTHO05D009301 1.1e-164 584.3 565 53.5
Atru.chr10.1407 Acer truncatum HOM05D007300 ORTHO05D009301 1.5e-164 583.9 563 53.5
Manes.17G064900 Manihot esculenta HOM05D007300 ORTHO05D009301 5.6e-164 582.0 654 48.3
TAR627G1006 Trochodendron aralioides HOM05D007300 ORTHO05D009301 1.3e-163 580.9 615 50.2
Nitab4.5_0003714g0040 Nicotiana tabacum HOM05D007300 ORTHO05D009301 4.8e-163 578.9 670 47.6
HanXRQChr04g0119571 Helianthus annuus HOM05D007300 ORTHO05D009301 4.0e-162 575.9 660 47.6
Eucgr.D00343 Eucalyptus grandis HOM05D007300 ORTHO05D009301 1.7e-160 570.5 587 50.9
Nitab4.5_0001283g0060 Nicotiana tabacum HOM05D007300 ORTHO05D009301 1.7e-160 570.5 670 47.2
ECA236G2360 Erigeron canadensis HOM05D007300 ORTHO05D009301 2.9e-160 569.7 665 48.0
PSO541G4163 Papaver somniferum HOM05D007300 ORTHO05D009301 1.2e-158 564.3 604 48.5
Aqoxy1G01857 Aquilegia oxysepala HOM05D007300 ORTHO05D009301 2.7e-158 563.1 680 45.9
ClCG03G007190 Citrullus lanatus HOM05D007300 ORTHO05D009301 2.7e-158 563.1 609 48.6
PGSC0003DMG400003073 Solanum tuberosum HOM05D007300 ORTHO05D009301 6.0e-158 562.0 603 50.1
CsaV3_1G032780 Cucumis sativus L. HOM05D007300 ORTHO05D009301 7.9e-158 561.6 599 49.4
Lalb_Chr13g0295471 Lupinus albus HOM05D007300 ORTHO05D009301 1.3e-157 560.8 636 47.6
Glyma.08G121900 Glycine max HOM05D007300 ORTHO05D009301 1.1e-156 557.8 612 47.2
Peaxi162Scf00649g00027 Petunia axillaris HOM05D007300 ORTHO05D009301 1.1e-156 557.8 624 48.7
Lsat_1_v5_gn_7_31040 Lactuca sativa HOM05D007300 ORTHO05D009301 2.5e-156 556.6 600 49.5
CAN.G257.51 Capsicum annuum HOM05D007300 ORTHO05D009301 3.3e-156 556.2 610 49.0
Solyc02g071280.3 Solanum lycopersicum HOM05D007300 ORTHO05D009301 1.6e-155 553.9 612 49.2
arahy.Tifrunner.gnm1.ann1.D64P8M Arachis hypogaea HOM05D007300 ORTHO05D009301 2.8e-155 553.1 615 47.8
Oeu021524.1 Olea europaea HOM05D007300 ORTHO05D009301 2.8e-155 553.1 607 49.1
arahy.Tifrunner.gnm1.ann1.FQ35JE Arachis hypogaea HOM05D007300 ORTHO05D009301 5.3e-154 548.9 627 46.9
Sopen02g020340 Solanum pennellii HOM05D007300 ORTHO05D009301 9.0e-154 548.1 611 48.6
Sc05g0006590 Simmondsia chinensis HOM05D007300 ORTHO05D009301 1.2e-153 547.7 678 45.4
Glyma.05G164500 Glycine max HOM05D007300 ORTHO05D009301 7.6e-153 545.0 672 44.8
Medtr8g088030 Medicago truncatula HOM05D007300 ORTHO05D009301 3.8e-152 542.7 613 47.0
Phvul.002G244500 Phaseolus vulgaris HOM05D007300 ORTHO05D009301 6.5e-152 542.0 661 44.8
Duzib235G1110 Durio zibethinus HOM05D007300 ORTHO05D009301 3.2e-151 539.7 682 46.0
Lj4g0024386 Lotus japonicus HOM05D007300 ORTHO05D009301 4.2e-151 539.3 614 47.1
Ca_17871_v3 Cicer arietinum L. HOM05D007300 ORTHO05D009301 2.1e-150 537.0 605 46.0
TPR.G6793 Trifolium pratense HOM05D007300 ORTHO05D009301 6.7e-149 531.9 677 44.2
AUR62027555 Chenopodium quinoa HOM05D007300 ORTHO05D009301 1.5e-148 530.8 612 46.6
Migut.M00959 Erythranthe guttata HOM05D007300 ORTHO05D009301 1.9e-148 530.4 674 45.7
Lj1C1181T32 Lonicera japonica HOM05D007300 ORTHO05D009301 1.4e-146 524.2 605 48.3
VMungo0251G3397 Vigna mungo HOM05D007300 ORTHO05D009301 6.9e-146 521.9 642 44.7
Nn3g20905 Nelumbo nucifera HOM05D007300 ORTHO05D009301 9.0e-146 521.5 633 46.1
PGR044G1273 Punica granatum HOM05D007300 ORTHO05D009301 2.0e-145 520.4 579 47.3
SalBow8G1735 Salvia bowleyana HOM05D007300 ORTHO05D009301 7.7e-145 518.5 617 47.0
DCAR_027959 Daucus carota HOM05D007300 ORTHO05D009301 1.3e-144 517.7 609 47.0
AUR62035801 Chenopodium quinoa HOM05D007300 ORTHO05D009301 1.7e-144 517.3 612 46.2
MBI10_g02388_MAGBIO Magnolia biondii HOM05D007300 ORTHO05D009301 5.5e-143 512.3 681 43.5
SGA_v2.0_scaffold1G00132 Striga asiatica HOM05D007300 ORTHO05D009301 2.7e-142 510.0 664 43.5
Psat7g066760 Pisum sativum HOM05D007300 ORTHO05D009301 6.1e-142 508.8 637 42.9
EL10Ac8g19794 Beta vulgaris HOM05D007300 ORTHO05D009301 2.7e-126 456.8 673 41.2
HPP92_023296 Vanilla planifolia HOM05D007300 ORTHO05D009301 8.8e-125 451.8 586 40.6
FAN16G1565 Fragaria x ananassa HOM05D007300 ORTHO05D009301 1.5e-124 451.1 478 49.8
ATR1153G036 Amborella trichopoda HOM05D007300 ORTHO05D009301 3.5e-121 439.9 644 39.1
PSO675G3105 Papaver somniferum HOM05D007300 ORTHO05D009301 6.6e-104 382.5 361 54.3
Sed0024786 Sechium edule HOM05D007300 ORTHO05D009301 2.5e-103 380.6 387 51.4
unitig_92.g28150 Utricularia gibba HOM05D007300 ORTHO05D009301 5.2e-101 372.9 460 45.7
SEGI_38698 Sequoiadendron giganteum HOM05D007300 ORTHO05D009301 4.7e-94 349.7 623 32.3
HPP92_023271 Vanilla planifolia HOM05D007300 ORTHO05D009301 6.8e-85 319.3 674 30.9
Mapoly0019s0078 Marchantia polymorpha HOM05D007300 ORTHO05D009301 2.3e-77 294.3 713 28.2
Zm00001eb296050 Zea mays HOM05D007300 ORTHO05D009301 6.0e-73 279.6 344 42.2
CDE06G2820 Ceratophyllum demersum HOM05D007300 ORTHO05D009301 3.3e-71 273.9 351 44.7
AagrBONN_evm.TU.Sc2ySwM_228.1844 Anthoceros agrestis HOM05D007300 ORTHO05D004905 7.3e-71 272.7 533 33.4
MELO3C002704.2 Cucumis melo HOM05D007300 ORTHO05D009301 6.9e-69 266.2 351 42.7
Pp3c15_14250 Physcomitrium patens HOM05D007300 ORTHO05D009301 3.8e-67 260.4 536 29.3
Os05g0566300 Oryza sativa ssp. japonica HOM05D007300 ORTHO05D009301 1.1e-58 232.3 239 46.0
Zm00001eb349440 Zea mays HOM05D007300 ORTHO05D009301 5.8e-44 183.3 176 50.0
Gorai.004G093400 Gossypium raimondii HOM05D007300 ORTHO05D009301 5.7e-39 166.8 133 60.9
Gohir.D08G088700 Gossypium hirsutum HOM05D007300 ORTHO05D009301 8.2e-38 162.9 148 57.4
SEGI_17563 Sequoiadendron giganteum HOM05D007300 ORTHO05D009301 5.9e-36 156.8 206 41.7
THA.LOC104798460 Tarenaya hassleriana HOM05D007300 ORTHO05D009301 2.3e-32 144.8 120 60.0
MCO05G669 Micromonas commoda HOM05D007300 ORTHO05D009301 1.4e-24 119.0 228 32.5
Zm00001eb184690 Zea mays HOM05D007300 ORTHO05D009301 6.5e-19 100.1 83 49.4
Pp3c4_17200 Physcomitrium patens HOM05D003927 ORTHO05D004905 1.4e-18 99.0 394 21.6
Cre03.g191950 Chlamydomonas reinhardtii HOM05D007300 ORTHO05D009301 1.2e-17 95.9 204 32.4
CDE06G1765 Ceratophyllum demersum HOM05D007300 ORTHO05D009301 1.9e-10 72.0 159 28.9
unitig_748.g7494 Utricularia gibba HOM05D003927 ORTHO05D004905 4.0e-08 64.3 128 25.8
arahy.Tifrunner.gnm1.ann1.YAS9I4 Arachis hypogaea HOM05D003927 ORTHO05D004905 5.2e-08 63.9 129 26.4
Medtr4g094668 Medicago truncatula HOM05D003927 ORTHO05D004905 5.2e-08 63.9 129 25.6
Gohir.A12G048400 Gossypium hirsutum HOM05D003927 ORTHO05D004905 6.7e-08 63.5 224 20.5
Sc24g0002980 Simmondsia chinensis HOM05D003927 ORTHO05D004905 6.7e-08 63.5 144 23.6
Duzib248G0257 Durio zibethinus HOM05D003927 ORTHO05D004905 8.8e-08 63.2 138 23.9
MSTRG.7601 Avicennia marina HOM05D003927 ORTHO05D004905 1.2e-07 62.8 129 25.6
Ca_18249_v3 Cicer arietinum L. HOM05D003927 ORTHO05D004905 1.2e-07 62.8 118 28.8
Potri.001G159700 Populus trichocarpa HOM05D003927 ORTHO05D004905 1.2e-07 62.8 129 26.4
Sabra01G0132300 Salix brachista HOM05D003927 ORTHO05D004905 1.2e-07 62.8 129 25.6
arahy.Tifrunner.gnm1.ann1.QMDN7F Arachis hypogaea HOM05D003927 ORTHO05D004905 1.5e-07 62.4 129 26.4
Lj2A344G38 Lonicera japonica HOM05D003927 ORTHO05D004905 1.5e-07 62.4 132 25.8
Solyc02g068530.4 Solanum lycopersicum HOM05D003927 ORTHO05D004905 1.5e-07 62.4 226 21.7
Sopen02g017670 Solanum pennellii HOM05D003927 ORTHO05D004905 1.5e-07 62.4 226 21.7
PGSC0003DMG400010448 Solanum tuberosum HOM05D003927 ORTHO05D004905 1.5e-07 62.4 226 21.7
Peaxi162Scf00199g00517 Petunia axillaris HOM05D003927 ORTHO05D004905 2.0e-07 62.0 129 25.6
TPR.G2935 Trifolium pratense HOM05D003927 ORTHO05D004905 2.0e-07 62.0 118 28.0
Nitab4.5_0000443g0090 Nicotiana tabacum HOM05D003927 ORTHO05D004905 2.6e-07 61.6 129 25.6
Nitab4.5_0006246g0020 Nicotiana tabacum HOM05D003927 ORTHO05D004905 2.6e-07 61.6 129 25.6
CAN.G149.2 Capsicum annuum HOM05D003927 ORTHO05D004905 4.4e-07 60.8 226 21.2
Gorai.008G049800 Gossypium raimondii HOM05D003927 ORTHO05D004905 4.4e-07 60.8 159 22.0
RcHm_v2.0_Chr5g0020631 Rosa chinensis HOM05D003927 ORTHO05D004905 4.4e-07 60.8 118 26.3
Thecc.02G005900 Theobroma cacao HOM05D003927 ORTHO05D004905 4.4e-07 60.8 129 23.3
Hund12931 Selenicereus undatus HOM05D003927 ORTHO05D004905 5.7e-07 60.5 111 27.9
CDE01G0678 Ceratophyllum demersum HOM05D000154 ORTHO05D004905 7.5e-07 60.1 129 22.5
CDE12G0287 Ceratophyllum demersum HOM05D003927 ORTHO05D004905 7.5e-07 60.1 129 22.5
COL.COLO4_17634 Corchorus olitorius HOM05D003927 ORTHO05D004905 7.5e-07 60.1 129 24.0
Gohir.D12G047200 Gossypium hirsutum HOM05D003927 ORTHO05D004905 7.5e-07 60.1 140 22.1
Oeu058944.1 Olea europaea HOM05D003927 ORTHO05D004905 7.5e-07 60.1 129 24.8
Cc00_g22880 Coffea canephora HOM05D003927 ORTHO05D004905 1.3e-06 59.3 273 20.1
SalBow8G3138 Salvia bowleyana HOM05D003927 ORTHO05D004905 1.3e-06 59.3 96 29.2
Duzib132G1257 Durio zibethinus HOM05D003927 ORTHO05D004905 1.7e-06 58.9 129 23.3
Atru.chr10.419 Acer truncatum HOM05D003927 ORTHO05D004905 2.2e-06 58.5 129 24.0
Gohir.A03G217900 Gossypium hirsutum HOM05D003927 ORTHO05D004905 2.8e-06 58.2 129 23.3
SGA_v2.0_scaffold298G47698 Striga asiatica HOM05D003927 ORTHO05D004905 4.8e-06 57.4 96 28.1
Migut.M01998 Erythranthe guttata HOM05D003927 ORTHO05D004905 6.3e-06 57.0 96 28.1


User provided reference genes

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