Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G48240 Arabidopsis lyrata HOM05D004635 ORTHO05D005899 0.0e+00 1204.5 615 100.0
Carub.0007s3429 Capsella rubella HOM05D004635 ORTHO05D005899 0.0e+00 1093.2 619 91.3
AT5G41190 Arabidopsis thaliana HOM05D004635 ORTHO05D005899 0.0e+00 1080.5 619 90.5
Sp7g00720 Schrenkiella parvula HOM05D004635 ORTHO05D005899 1.1e-289 999.6 615 83.4
SpUn0010_0200 Schrenkiella parvula HOM05D004635 ORTHO05D005899 1.1e-289 999.6 615 83.4
Thhalv10027696m.g Eutrema salsugineum HOM05D004635 ORTHO05D005899 1.1e-278 963.0 618 81.1
BcaB06g27604 Brassica carinata HOM05D004635 ORTHO05D005899 4.4e-267 924.5 616 78.7
C04p48290 Brassica napus HOM05D004635 ORTHO05D005899 1.4e-265 919.5 616 77.3
BcaC02g08976 Brassica carinata HOM05D004635 ORTHO05D005899 3.1e-265 918.3 616 77.3
BolC4t26422H Brassica oleracea HOM05D004635 ORTHO05D005899 3.1e-265 918.3 616 77.3
A07p20710 Brassica napus HOM05D004635 ORTHO05D005899 1.6e-261 906.0 614 77.5
Aa31LG9G660 Aethionema arabicum HOM05D004635 ORTHO05D005899 8.8e-260 900.2 614 76.7
BraA04t17085Z Brassica rapa HOM05D004635 ORTHO05D005899 1.1e-259 899.8 616 76.3
BraA07t29762Z Brassica rapa HOM05D004635 ORTHO05D005899 1.1e-259 899.8 614 77.4
A04p14360 Brassica napus HOM05D004635 ORTHO05D005899 4.4e-259 897.9 616 76.1
BcaB02g07904 Brassica carinata HOM05D004635 ORTHO05D005899 7.5e-243 844.0 615 73.8
THA.LOC104818064 Tarenaya hassleriana HOM05D004635 ORTHO05D005899 2.7e-240 835.5 623 70.9
CARHR213190 Cardamine hirsuta HOM05D004635 ORTHO05D005899 4.5e-232 808.1 611 69.6
BcaC08g44516 Brassica carinata HOM05D004635 ORTHO05D005899 9.2e-225 783.9 615 69.3
COL.COLO4_34438 Corchorus olitorius HOM05D004635 ORTHO05D005899 2.5e-214 749.2 623 63.4
Atru.chr9.2220 Acer truncatum HOM05D004635 ORTHO05D005899 2.1e-213 746.1 640 63.1
Duzib084G1397 Durio zibethinus HOM05D004635 ORTHO05D005899 2.3e-212 742.7 624 63.5
Thecc.03G276500 Theobroma cacao HOM05D004635 ORTHO05D005899 1.1e-209 733.8 620 63.9
Eucgr.E00572 Eucalyptus grandis HOM05D004635 ORTHO05D005899 2.1e-208 729.6 623 62.4
Ciclev10019281m.g Citrus clementina HOM05D004635 ORTHO05D005899 1.0e-207 727.2 635 61.1
Manes.01G063000 Manihot esculenta HOM05D004635 ORTHO05D005899 4.0e-204 715.3 629 61.5
Gorai.006G209700 Gossypium raimondii HOM05D004635 ORTHO05D005899 6.8e-204 714.5 623 62.3
Gohir.A09G192700 Gossypium hirsutum HOM05D004635 ORTHO05D005899 1.5e-203 713.4 621 62.2
Gohir.D09G186900 Gossypium hirsutum HOM05D004635 ORTHO05D005899 2.0e-203 713.0 623 62.3
Cpa.g.sc202.13 Carica papaya HOM05D004635 ORTHO05D005899 4.4e-203 711.8 617 62.4
PGR042G2640 Punica granatum HOM05D004635 ORTHO05D005899 5.8e-203 711.4 617 61.4
RcHm_v2.0_Chr7g0211871 Rosa chinensis HOM05D004635 ORTHO05D005899 5.8e-203 711.4 627 60.9
MELO3C005661.2 Cucumis melo HOM05D004635 ORTHO05D005899 1.7e-202 709.9 622 60.6
CsaV3_5G002950 Cucumis sativus L. HOM05D004635 ORTHO05D005899 3.8e-202 708.8 623 60.5
MD14G1101800 Malus domestica HOM05D004635 ORTHO05D005899 2.4e-201 706.1 629 60.6
Thhalv10009994m.g Eutrema salsugineum HOM05D004635 ORTHO05D005899 1.9e-198 696.4 625 63.0
ClCG01G002860 Citrullus lanatus HOM05D004635 ORTHO05D005899 3.6e-197 692.2 624 58.8
Actinidia02016 Actinidia chinensis HOM05D004635 ORTHO05D005899 4.7e-197 691.8 627 59.3
Dinv38955 Davidia involucrata HOM05D004635 ORTHO05D005899 2.4e-196 689.5 632 59.7
Potri.003G124700 Populus trichocarpa HOM05D004635 ORTHO05D005899 4.0e-196 688.7 630 60.5
Lj6A677T80 Lonicera japonica HOM05D004635 ORTHO05D005899 6.9e-196 688.0 634 57.6
Prupe.5G097400 Prunus persica HOM05D004635 ORTHO05D005899 1.3e-194 683.7 626 59.3
Sabra03G0088200 Salix brachista HOM05D004635 ORTHO05D005899 1.7e-194 683.3 629 59.6
QL01p003129 Quercus lobata HOM05D004635 ORTHO05D005899 3.8e-194 682.2 635 59.5
TWI81G1014 Tripterygium wilfordii HOM05D004635 ORTHO05D005899 1.9e-193 679.9 622 60.6
FAN18G0535 Fragaria x ananassa HOM05D004635 ORTHO05D005899 1.2e-192 677.2 625 59.7
FAN04G0694 Fragaria x ananassa HOM05D004635 ORTHO05D005899 6.0e-192 674.9 625 58.9
CANSAT78G0227 Cannabis sativa HOM05D004635 ORTHO05D005899 1.7e-191 673.3 613 59.7
FAN13G3179 Fragaria x ananassa HOM05D004635 ORTHO05D005899 5.1e-191 671.8 624 58.8
FvH4_5g23090 Fragaria vesca HOM05D004635 ORTHO05D005899 6.6e-191 671.4 625 59.4
FAN18G1690 Fragaria x ananassa HOM05D004635 ORTHO05D005899 6.6e-191 671.4 625 59.4
Peaxi162Scf00102g01512 Petunia axillaris HOM05D004635 ORTHO05D005899 4.3e-190 668.7 623 58.6
Cfa012156 Carpinus fangiana HOM05D004635 ORTHO05D005899 9.6e-190 667.5 624 59.5
Nitab4.5_0003907g0020 Nicotiana tabacum HOM05D004635 ORTHO05D005899 6.2e-189 664.8 602 60.6
Haze_08871 Corylus avellana HOM05D004635 ORTHO05D005899 8.1e-189 664.5 620 59.2
Hma1.2p1_0377F.1_g139240 Hydrangea macrophylla HOM05D004635 ORTHO05D005899 1.8e-188 663.3 621 58.8
Hund11485 Selenicereus undatus HOM05D004635 ORTHO05D005899 2.0e-187 659.8 635 58.0
CSS0019840 Camellia sinensis var. sinensis HOM05D004635 ORTHO05D005899 2.6e-187 659.4 628 57.2
DCAR_000603 Daucus carota HOM05D004635 ORTHO05D005899 3.4e-187 659.1 629 58.8
Aqoxy5G04278 Aquilegia oxysepala HOM05D004635 ORTHO05D005899 9.9e-187 657.5 627 58.7
VMungo0251G2718 Vigna mungo HOM05D004635 ORTHO05D005899 3.8e-186 655.6 638 56.3
TPR.G12861 Trifolium pratense HOM05D004635 ORTHO05D005899 8.4e-186 654.4 634 56.6
PGSC0003DMG400029793 Solanum tuberosum HOM05D004635 ORTHO05D005899 1.1e-185 654.1 608 59.7
PSO017G3139 Papaver somniferum HOM05D004635 ORTHO05D005899 1.9e-185 653.3 626 57.3
CAN.G792.84 Capsicum annuum HOM05D004635 ORTHO05D005899 2.4e-185 652.9 603 59.7
PSO170G0760 Papaver somniferum HOM05D004635 ORTHO05D005899 3.2e-185 652.5 626 57.2
arahy.Tifrunner.gnm1.ann1.NB74KP Arachis hypogaea HOM05D004635 ORTHO05D005899 7.1e-185 651.4 622 56.4
Nitab4.5_0004836g0050 Nicotiana tabacum HOM05D004635 ORTHO05D005899 7.1e-185 651.4 610 58.5
arahy.Tifrunner.gnm1.ann1.Y4HLQF Arachis hypogaea HOM05D004635 ORTHO05D005899 1.2e-184 650.6 620 56.6
HanXRQChr13g0416481 Helianthus annuus HOM05D004635 ORTHO05D005899 1.2e-184 650.6 620 58.5
vmacro11312 Vaccinium macrocarpon HOM05D004635 ORTHO05D005899 2.1e-184 649.8 625 58.9
ECA240G4094 Erigeron canadensis HOM05D004635 ORTHO05D005899 2.7e-184 649.4 617 57.2
Cc08_g14490 Coffea canephora HOM05D004635 ORTHO05D005899 3.5e-184 649.0 644 55.1
Phvul.002G288000 Phaseolus vulgaris HOM05D004635 ORTHO05D005899 6.0e-184 648.3 641 55.7
Lalb_Chr05g0224871 Lupinus albus HOM05D004635 ORTHO05D005899 7.9e-184 647.9 621 56.8
Medtr8g098490 Medicago truncatula HOM05D004635 ORTHO05D005899 1.3e-183 647.1 626 56.7
TAR636G1354 Trochodendron aralioides HOM05D004635 ORTHO05D005899 1.8e-183 646.7 640 56.1
PSO384G0809 Papaver somniferum HOM05D004635 ORTHO05D005899 3.9e-183 645.6 626 57.7
PSO339G4625 Papaver somniferum HOM05D004635 ORTHO05D005899 1.5e-182 643.7 627 57.1
SGA_v2.0_scaffold146G36254 Striga asiatica HOM05D004635 ORTHO05D005899 2.5e-182 642.9 622 56.9
Glyma.08G013300 Glycine max HOM05D004635 ORTHO05D005899 3.3e-182 642.5 642 56.9
Ca_17544_v3 Cicer arietinum L. HOM05D004635 ORTHO05D005899 2.1e-181 639.8 634 56.2
Lj4g0017456 Lotus japonicus HOM05D004635 ORTHO05D005899 2.8e-181 639.4 610 55.4
arahy.Tifrunner.gnm1.ann1.BGY2GF Arachis hypogaea HOM05D004635 ORTHO05D005899 6.9e-180 634.8 625 55.2
Lsat_1_v5_gn_6_87181 Lactuca sativa HOM05D004635 ORTHO05D005899 6.9e-180 634.8 619 56.4
Solyc08g007990.3 Solanum lycopersicum HOM05D004635 ORTHO05D005899 6.9e-180 634.8 602 58.6
TAR629G3080 Trochodendron aralioides HOM05D004635 ORTHO05D005899 6.9e-180 634.8 617 57.5
MBI18_g19087_MAGBIO Magnolia biondii HOM05D004635 ORTHO05D005899 1.5e-179 633.6 645 55.3
Sopen08g003860 Solanum pennellii HOM05D004635 ORTHO05D005899 2.6e-179 632.9 602 58.1
AUR62017259 Chenopodium quinoa HOM05D004635 ORTHO05D005899 3.4e-179 632.5 622 55.9
Psat7g034520 Pisum sativum HOM05D004635 ORTHO05D005899 3.4e-179 632.5 588 58.7
GSVIVG01019776001 Vitis vinifera HOM05D004635 ORTHO05D005899 3.4e-179 632.5 614 58.0
EL10Ac5g12781 Beta vulgaris HOM05D004635 ORTHO05D005899 4.5e-179 632.1 617 56.1
arahy.Tifrunner.gnm1.ann1.MF5MQE Arachis hypogaea HOM05D004635 ORTHO05D005899 5.8e-179 631.7 617 55.8
Nn5g27546 Nelumbo nucifera HOM05D004635 ORTHO05D005899 5.8e-179 631.7 641 56.3
EL10Ac1g00317 Beta vulgaris HOM05D004635 ORTHO05D005899 1.3e-178 630.6 621 55.7
PGSC0003DMG400005819 Solanum tuberosum HOM05D004635 ORTHO05D005899 2.2e-178 629.8 602 58.1
AUR62010616 Chenopodium quinoa HOM05D004635 ORTHO05D005899 1.4e-177 627.1 631 55.0
Sed0015372 Sechium edule HOM05D004635 ORTHO05D005899 4.2e-177 625.5 611 55.8
Nn1g02763 Nelumbo nucifera HOM05D004635 ORTHO05D005899 1.0e-175 620.9 632 55.5
MSTRG.13840 Avicennia marina HOM05D004635 ORTHO05D005899 1.9e-174 616.7 642 53.9
RcHm_v2.0_Chr7g0179141 Rosa chinensis HOM05D004635 ORTHO05D005899 4.3e-174 615.5 615 55.3
Sed0018462 Sechium edule HOM05D004635 ORTHO05D005899 4.5e-171 605.5 514 61.9
FAN08G3353 Fragaria x ananassa HOM05D004635 ORTHO05D005899 2.5e-169 599.7 555 58.7
SalBow6G1328 Salvia bowleyana HOM05D004635 ORTHO05D005899 4.6e-168 595.5 628 53.3
ATR0064G111 Amborella trichopoda HOM05D004635 ORTHO05D005899 1.4e-159 567.4 618 52.4
Carub.0004s0410 Capsella rubella HOM05D004635 ORTHO05D005899 6.7e-159 565.1 519 61.3
C06p19650 Brassica napus HOM05D004635 ORTHO05D005899 8.8e-159 564.7 420 71.4
CiPaw.11G137400 Carya illinoinensis HOM05D004635 ORTHO05D005899 4.2e-153 545.8 538 56.9
HPP92_020857 Vanilla planifolia HOM05D004635 ORTHO05D005899 2.6e-150 536.6 640 48.3
Os02g0114700 Oryza sativa ssp. japonica HOM05D004635 ORTHO05D005899 4.5e-147 525.8 586 49.3
Glyma.05G206400 Glycine max HOM05D004635 ORTHO05D005899 1.3e-146 524.2 554 55.1
Oeu011058.1 Olea europaea HOM05D004635 ORTHO05D005899 1.6e-144 517.3 629 48.3
CDE06G0591 Ceratophyllum demersum HOM05D004635 ORTHO05D005899 2.6e-139 500.0 525 54.9
Zm00001eb209610 Zea mays HOM05D004635 ORTHO05D005899 3.0e-135 486.5 593 47.9
SEGI_23350 Sequoiadendron giganteum HOM05D004635 ORTHO05D005899 1.3e-133 481.1 680 44.0
unitig_37.g12250 Utricularia gibba HOM05D004635 ORTHO05D005899 1.3e-133 481.1 602 48.3
BolC6t37157H Brassica oleracea HOM05D004635 ORTHO05D005899 1.6e-123 447.6 287 79.8
Sc01g0009470 Simmondsia chinensis HOM05D004635 ORTHO05D005899 5.9e-123 445.7 487 54.6
Actinidia14552 Actinidia chinensis HOM05D004635 ORTHO05D005899 1.9e-121 440.7 640 45.3
Zm00001eb229850 Zea mays HOM05D004635 ORTHO05D005899 7.3e-113 412.1 515 48.2
BolC9t58686H Brassica oleracea HOM05D004635 ORTHO05D005899 2.8e-112 410.2 367 64.3
BcaC04g18687 Brassica carinata HOM05D004635 ORTHO05D005899 2.3e-111 407.1 444 56.5
C09p58220 Brassica napus HOM05D000111 ORTHO05D000134 7.5e-110 402.1 367 64.3
RcHm_v2.0_Chr7g0211921 Rosa chinensis HOM05D004635 ORTHO05D005899 1.4e-108 397.9 398 57.5
RcHm_v2.0_Chr2g0099081 Rosa chinensis HOM05D004635 ORTHO05D005899 3.5e-107 393.3 532 48.1
Pp3c2_34320 Physcomitrium patens HOM05D004635 ORTHO05D005899 1.5e-105 387.9 654 39.3
BolC6t37158H Brassica oleracea HOM05D004635 ORTHO05D005899 4.9e-101 372.9 240 78.8
Migut.A00784 Erythranthe guttata HOM05D004635 ORTHO05D005899 2.4e-100 370.5 429 51.7
AagrBONN_evm.TU.Sc2ySwM_362.355 Anthoceros agrestis HOM05D004635 ORTHO05D005899 2.2e-93 347.4 654 35.8
SMO171G0086 Selaginella moellendorffii HOM05D004635 ORTHO05D005899 4.3e-89 333.2 610 36.9
Dinv37658 Davidia involucrata HOM05D004635 ORTHO05D005899 1.1e-87 328.6 337 54.3
CDE05G1698 Ceratophyllum demersum HOM05D004635 ORTHO05D005899 1.2e-78 298.5 441 45.4
FAN26G1714 Fragaria x ananassa HOM05D004635 ORTHO05D005899 1.2e-78 298.5 370 50.0
FAN28G2416 Fragaria x ananassa HOM05D004635 ORTHO05D005899 1.2e-78 298.5 370 50.0
BcaC08g44514 Brassica carinata HOM05D004635 ORTHO05D005899 2.7e-75 287.3 148 87.8
Dinv37657 Davidia involucrata HOM05D004635 ORTHO05D005899 3.9e-74 283.5 241 61.4
Mapoly0033s0014 Marchantia polymorpha HOM05D004635 ORTHO05D005899 1.9e-73 281.2 562 36.8
BcaC08g44517 Brassica carinata HOM05D004635 ORTHO05D005899 9.0e-71 272.3 259 63.7
C06p19660 Brassica napus HOM05D004635 ORTHO05D005899 1.9e-68 264.6 156 87.2
CBR_g50931 Chara braunii HOM05D004635 ORTHO05D005899 1.6e-59 235.0 775 28.1
RcHm_v2.0_Chr7g0211961 Rosa chinensis HOM05D004635 ORTHO05D005899 5.1e-58 229.9 200 61.5
PRCOL_00006831 Prasinoderma coloniale HOM05D004635 ORTHO05D005899 1.4e-42 178.7 583 29.5
MCO14G249 Micromonas commoda HOM05D004635 ORTHO05D005899 3.9e-42 177.2 543 28.0
Cre01.g031750 Chlamydomonas reinhardtii HOM05D004635 ORTHO05D005899 1.7e-40 171.8 570 28.9
QL12p018319 Quercus lobata HOM05D004635 ORTHO05D005899 4.1e-39 167.2 341 37.5
VMungo1127G2192 Vigna mungo HOM05D004635 ORTHO05D005899 4.2e-36 157.1 182 47.8
EL10Ac8g19215 Beta vulgaris HOM05D000238 ORTHO05D001043 4.7e-19 100.5 83 55.4
Solyc12g015770.3 Solanum lycopersicum HOM05D000074 ORTHO05D001262 2.3e-18 98.2 60 78.3
Lj2C188G12 Lonicera japonica HOM05D004635 ORTHO05D005899 1.5e-17 95.5 241 32.0
AL4G15290 Arabidopsis lyrata HOM05D004635 ORTHO05D079484 7.5e-17 93.2 121 50.4
EL10Ac5g10794 Beta vulgaris HOM05D004635 ORTHO05D005899 1.5e-12 79.0 65 66.2
Lj2C188G13 Lonicera japonica HOM05D004635 ORTHO05D005899 1.4e-10 72.4 78 48.7
Sopen12g007660 Solanum pennellii HOM05D000006 ORTHO05D000695 9.1e-07 59.7 41 70.7
arahy.Tifrunner.gnm1.ann1.CCN99U Arachis hypogaea HOM05D004635 ORTHO05D085572 1.2e-06 59.3 43 62.8


User provided reference genes

Program Settings