Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G28430 Arabidopsis lyrata HOM05D013391 ORTHO05D013407 1.8e-102 375.9 193 100.0
AT5G17360 Arabidopsis thaliana HOM05D013391 ORTHO05D013407 1.3e-81 306.6 174 89.7
Sp6g26860 Schrenkiella parvula HOM05D013391 ORTHO05D013407 2.2e-79 299.3 174 86.8
Carub.0006s1557 Capsella rubella HOM05D013391 ORTHO05D013407 2.9e-76 288.9 178 86.0
Thhalv10014812m.g Eutrema salsugineum HOM05D013391 ORTHO05D013407 1.9e-75 286.2 180 82.8
BolC9t58819H Brassica oleracea HOM05D013391 ORTHO05D013407 2.2e-68 262.7 177 79.1
BraA10t44261Z Brassica rapa HOM05D013391 ORTHO05D013407 5.0e-68 261.5 177 77.4
BcaC04g18798 Brassica carinata HOM05D013391 ORTHO05D013407 1.6e-66 256.5 177 77.4
BcaB08g36777 Brassica carinata HOM05D013391 ORTHO05D013407 4.7e-66 255.0 178 78.7
CARHR195850 Cardamine hirsuta HOM05D013391 ORTHO05D013407 1.4e-57 226.9 151 83.4
Aa31LG11G12250 Aethionema arabicum HOM05D013391 ORTHO05D013407 1.1e-35 154.1 183 52.5
C09p59790 Brassica napus HOM05D001935 ORTHO05D013407 1.5e-35 153.7 102 80.4
A10p22040 Brassica napus HOM05D001935 ORTHO05D013407 4.2e-35 152.1 102 79.4
THA.LOC104820854 Tarenaya hassleriana HOM05D013391 ORTHO05D013407 2.8e-34 149.4 185 49.2
Ciclev10010910m.g Citrus clementina HOM05D001934 ORTHO05D002139 1.2e-26 124.0 166 45.2
Cpa.g.sc170.9 Carica papaya HOM05D001934 ORTHO05D002139 7.0e-22 108.2 144 45.1
COL.COLO4_03616 Corchorus olitorius HOM05D001934 ORTHO05D002139 7.0e-22 108.2 180 42.2
GSVIVG01030942001 Vitis vinifera HOM05D001934 ORTHO05D002139 1.2e-21 107.5 190 37.4
Lj2A437T33 Lonicera japonica HOM05D001934 ORTHO05D002139 4.6e-21 105.5 145 46.2
Thecc.04G125900 Theobroma cacao HOM05D001934 ORTHO05D002139 6.0e-21 105.1 184 37.5
Gorai.007G178600 Gossypium raimondii HOM05D001934 ORTHO05D002139 3.9e-20 102.4 186 36.6
Gohir.A11G161200 Gossypium hirsutum HOM05D001934 ORTHO05D002139 1.1e-19 100.9 186 35.5
Duzib133G0659 Durio zibethinus HOM05D001934 ORTHO05D002139 2.5e-19 99.8 184 37.0
Hund13697 Selenicereus undatus HOM05D001934 ORTHO05D002139 2.5e-19 99.8 161 40.4
Sc10g0000990 Simmondsia chinensis HOM05D001934 ORTHO05D002139 2.5e-19 99.8 149 47.0
Gohir.D11G167500 Gossypium hirsutum HOM05D001934 ORTHO05D002139 5.6e-19 98.6 175 37.1
Sabra04G0063400 Salix brachista HOM05D001934 ORTHO05D002139 5.6e-19 98.6 190 38.4
CAN.G625.65 Capsicum annuum HOM05D001934 ORTHO05D002139 1.2e-18 97.4 144 42.4
ClCG07G016470 Citrullus lanatus HOM05D001934 ORTHO05D002139 1.2e-18 97.4 149 39.6
EL10Ac2g04516 Beta vulgaris HOM05D001934 ORTHO05D002139 3.6e-18 95.9 195 37.9
AUR62023215 Chenopodium quinoa HOM05D001934 ORTHO05D002139 3.6e-18 95.9 150 41.3
Glyma.18G292900 Glycine max HOM05D001934 ORTHO05D002139 3.6e-18 95.9 146 41.1
Gohir.A11G166900 Gossypium hirsutum HOM05D001934 ORTHO05D002139 3.6e-18 95.9 154 40.9
CsaV3_4G010360 Cucumis sativus L. HOM05D001934 ORTHO05D002139 4.7e-18 95.5 154 39.0
Dinv33974 Davidia involucrata HOM05D001934 ORTHO05D002139 1.1e-17 94.4 179 36.9
RcHm_v2.0_Chr3g0493691 Rosa chinensis HOM05D001934 ORTHO05D002139 1.1e-17 94.4 181 40.3
Aqoxy3G03985 Aquilegia oxysepala HOM05D001934 ORTHO05D002139 1.8e-17 93.6 171 38.6
Hma1.2p1_0500F.1_g167090 Hydrangea macrophylla HOM05D001934 ORTHO05D002139 1.8e-17 93.6 192 35.4
MELO3C010375.2 Cucumis melo HOM05D001934 ORTHO05D002139 3.1e-17 92.8 154 38.3
Manes.02G072600 Manihot esculenta HOM05D001934 ORTHO05D002139 3.1e-17 92.8 177 36.2
Sed0005689 Sechium edule HOM05D001934 ORTHO05D002139 4.0e-17 92.4 180 36.7
AUR62023261 Chenopodium quinoa HOM05D001934 ORTHO05D002139 1.5e-16 90.5 148 39.9
Ca_08099_v3 Cicer arietinum L. HOM05D001934 ORTHO05D002139 1.5e-16 90.5 153 38.6
Peaxi162Scf00458g00116 Petunia axillaris HOM05D001934 ORTHO05D002139 1.5e-16 90.5 155 38.1
TPR.G28395 Trifolium pratense HOM05D001934 ORTHO05D002139 2.0e-16 90.1 150 40.7
Potri.004G094200 Populus trichocarpa HOM05D001934 ORTHO05D002139 2.6e-16 89.7 154 40.3
VMungo1383G1252 Vigna mungo HOM05D001934 ORTHO05D002139 5.8e-16 88.6 147 39.5
CSS0011990 Camellia sinensis var. sinensis HOM05D001934 ORTHO05D002139 7.5e-16 88.2 150 38.7
Cc07_g08410 Coffea canephora HOM05D001934 ORTHO05D002139 7.5e-16 88.2 154 42.2
Prupe.3G150300 Prunus persica HOM05D001934 ORTHO05D002139 7.5e-16 88.2 148 40.5
Nitab4.5_0008597g0010 Nicotiana tabacum HOM05D001934 ORTHO05D002139 9.8e-16 87.8 156 37.8
Sopen02g035770 Solanum pennellii HOM05D001934 ORTHO05D002139 1.3e-15 87.4 164 38.4
Atru.chr1.1572 Acer truncatum HOM05D001934 ORTHO05D002139 1.7e-15 87.0 201 35.3
DCAR_025889 Daucus carota HOM05D001934 ORTHO05D002139 1.7e-15 87.0 184 31.5
Eucgr.F02800 Eucalyptus grandis HOM05D001934 ORTHO05D002139 1.7e-15 87.0 148 41.2
FAN23G2419 Fragaria x ananassa HOM05D001934 ORTHO05D002139 2.9e-15 86.3 191 36.6
Solyc02g091120.4 Solanum lycopersicum HOM05D001934 ORTHO05D002139 2.9e-15 86.3 164 37.8
Aa31LG2G3200 Aethionema arabicum HOM05D001934 ORTHO05D002139 3.7e-15 85.9 145 40.7
Lj1g0010629 Lotus japonicus HOM05D001934 ORTHO05D002139 3.7e-15 85.9 146 39.7
Phvul.008G009200 Phaseolus vulgaris HOM05D001934 ORTHO05D002139 6.4e-15 85.1 151 40.4
QL02p049268 Quercus lobata HOM05D001934 ORTHO05D002139 6.4e-15 85.1 173 37.6
TWI53G0729 Tripterygium wilfordii HOM05D001934 ORTHO05D002139 6.4e-15 85.1 149 42.3
Thhalv10018010m.g Eutrema salsugineum HOM05D001934 ORTHO05D002139 1.1e-14 84.3 148 42.6
Rhsim08G0084300 Rhododendron simsii HOM05D001934 ORTHO05D002139 1.4e-14 84.0 178 34.3
FvH4_1g29000 Fragaria vesca HOM05D001934 ORTHO05D002139 2.4e-14 83.2 164 40.2
MBI16_g21169_MAGBIO Magnolia biondii HOM05D001934 ORTHO05D002139 2.4e-14 83.2 150 36.0
FAN19G2355 Fragaria x ananassa HOM05D001934 ORTHO05D002139 3.2e-14 82.8 164 39.6
FAN26G0892 Fragaria x ananassa HOM05D001934 ORTHO05D002139 4.1e-14 82.4 151 41.1
ECA232G4925 Erigeron canadensis HOM05D001934 ORTHO05D002139 5.4e-14 82.0 208 34.1
THA.LOC104805591 Tarenaya hassleriana HOM05D001934 ORTHO05D002139 7.1e-14 81.6 145 38.6
vmacro18063 Vaccinium macrocarpon HOM05D001934 ORTHO05D002139 7.1e-14 81.6 161 37.9
MD00G1054100 Malus domestica HOM05D001934 ORTHO05D002139 1.2e-13 80.9 151 38.4
Haze_14199 Corylus avellana HOM05D001934 ORTHO05D002139 1.6e-13 80.5 181 37.6
Gorai.007G185500 Gossypium raimondii HOM05D001934 ORTHO05D002139 3.5e-13 79.3 177 33.9
SGA_v2.0_scaffold202G41482 Striga asiatica HOM05D001934 ORTHO05D002139 1.0e-12 77.8 176 38.1
Gohir.D11G173200 Gossypium hirsutum HOM05D001934 ORTHO05D002139 1.3e-12 77.4 177 33.9
Hund16186 Selenicereus undatus HOM05D001934 ORTHO05D002139 1.3e-12 77.4 168 32.1
HanXRQChr09g0262461 Helianthus annuus HOM05D001934 ORTHO05D002139 1.7e-12 77.0 199 33.7
Lsat_1_v5_gn_4_156060 Lactuca sativa HOM05D001934 ORTHO05D002139 1.7e-12 77.0 203 32.0
arahy.Tifrunner.gnm1.ann1.Q72QFH Arachis hypogaea HOM05D001934 ORTHO05D002139 2.3e-12 76.6 163 37.4
arahy.Tifrunner.gnm1.ann1.TBH1BX Arachis hypogaea HOM05D001934 ORTHO05D002139 2.3e-12 76.6 163 37.4
BcaC08g46141 Brassica carinata HOM05D001934 ORTHO05D002139 2.3e-12 76.6 181 34.3
C06p40110 Brassica napus HOM05D001934 ORTHO05D002139 2.3e-12 76.6 181 34.3
BolC6t39091H Brassica oleracea HOM05D001934 ORTHO05D002139 2.3e-12 76.6 181 34.3
CiPaw.03G066000 Carya illinoinensis HOM05D001934 ORTHO05D002139 2.3e-12 76.6 178 36.5
Cfa007877 Carpinus fangiana HOM05D001934 ORTHO05D002139 6.6e-12 75.1 181 37.0
BraA07t30983Z Brassica rapa HOM05D001934 ORTHO05D002139 8.6e-12 74.7 146 37.7
TAR622G1193 Trochodendron aralioides HOM05D001934 ORTHO05D002139 8.6e-12 74.7 173 33.5
BcaB03g15237 Brassica carinata HOM05D001934 ORTHO05D002139 1.9e-11 73.6 146 37.7
PGR004G2572 Punica granatum HOM05D001934 ORTHO05D002139 2.5e-11 73.2 149 34.2
Nn4g24041 Nelumbo nucifera HOM05D001934 ORTHO05D002139 2.1e-10 70.1 166 35.5
Carub.0002s1295 Capsella rubella HOM05D001934 ORTHO05D002139 2.8e-10 69.7 150 37.3
Cpa.g.sc170.7 Carica papaya HOM05D001934 ORTHO05D002139 3.6e-10 69.3 90 44.4
Migut.H00252 Erythranthe guttata HOM05D001934 ORTHO05D002139 3.6e-10 69.3 124 41.1
Psat3g096760 Pisum sativum HOM05D001934 ORTHO05D002139 1.4e-09 67.4 159 33.3
AL2G24890 Arabidopsis lyrata HOM05D001934 ORTHO05D002139 2.3e-09 66.6 185 33.5
AT1G66730 Arabidopsis thaliana HOM05D001934 ORTHO05D002139 2.3e-09 66.6 186 31.7
Medtr7g082860 Medicago truncatula HOM05D001934 ORTHO05D002139 4.0e-09 65.9 193 29.5
CANSAT78G0902 Cannabis sativa HOM05D001934 ORTHO05D002139 5.2e-09 65.5 217 29.0
SEGI_13359 Sequoiadendron giganteum HOM05D001934 ORTHO05D002139 7.6e-08 61.6 181 29.3
SEGI_23241 Sequoiadendron giganteum HOM05D001934 ORTHO05D002139 7.6e-08 61.6 181 29.3
Zm00001eb156510 Zea mays HOM05D001934 ORTHO05D002139 9.9e-08 61.2 147 32.0
Lalb_Chr17g0336001 Lupinus albus HOM05D001934 ORTHO05D002139 2.9e-07 59.7 173 28.9
ATR0691G097 Amborella trichopoda HOM05D001934 ORTHO05D002139 1.1e-06 57.8 152 28.9
PSO761G0134 Papaver somniferum HOM05D001934 ORTHO05D013407 9.2e-06 54.7 124 33.9


User provided reference genes

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