Gene: ATR0691G097
General Information
Structural Information
- Species Amborella trichopoda
- Gene Identifier ATR0691G097
- Transcript Identifier ATR0691G097.1
- Gene Type Coding gene
- Location AmTr_v1.0_scaffold00006 : 788116-835370 : positive
Gene Family Information
- ID HOM05D001934
- #Genes/#Species 342/100
- Phylogenetic origin
- ID ORTHO05D002139
- #Genes/#Species 313/100
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- id evm_27.TU.AmTr_v1.0_scaffold00006.28.v1.0
- pacid 31560362
Descriptions
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006281 | IEA | InterPro | DNA repair | |
| GO:0006310 | IEA | InterPro | DNA recombination | |
| GO:0071897 | IEA | InterPro | DNA biosynthetic process | |
| GO:0006979 | ISO | PLAZA Integrative Orthology | response to oxidative stress | AT1G66730 |
| GO:0009409 | ISO | PLAZA Integrative Orthology | response to cold | AT1G66730 |
| GO:0002237 | ISO | PLAZA Integrative Orthology | response to molecule of bacterial origin | AT1G66730 |
| GO:0015074 | ISO | PLAZA Integrative Orthology | DNA integration | AT1G66730 |
| GO:0048316 | ISO | PLAZA Integrative Orthology | seed development | AT1G66730 |
| GO:0010225 | ISO | PLAZA Integrative Orthology | response to UV-C | AT1G66730 |
| GO:1904975 | ISO | PLAZA Integrative Orthology | response to bleomycin | AT1G66730 |
| GO:0006303 | ISO | PLAZA Integrative Orthology | double-strand break repair via nonhomologous end joining | AT1G66730 |
| GO:0009845 | ISO | PLAZA Integrative Orthology | seed germination | AT1G66730 |
| GO:2000685 | ISO | PLAZA Integrative Orthology | positive regulation of cellular response to X-ray | AT1G66730 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003677 | IEA | InterPro | DNA binding | |
| GO:0003910 | IEA | InterPro | DNA ligase (ATP) activity | |
| GO:0005524 | IEA | InterPro | ATP binding |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR011084 | DNA repair metallo-beta-lactamase |
| IPR036599 | DNA ligase, ATP-dependent, N-terminal domain superfamily |
| IPR012308 | DNA ligase, ATP-dependent, N-terminal |
| IPR036866 | Ribonuclease Z/Hydroxyacylglutathione hydrolase-like |
| IPR012340 | Nucleic acid-binding, OB-fold |
| IPR012310 | DNA ligase, ATP-dependent, central |
| IPR000977 | DNA ligase, ATP-dependent |
| IPR012309 | DNA ligase, ATP-dependent, C-terminal |
| Mapman id | Description |
|---|---|
| 14.4.5 | DNA damage response.nonhomologous end-joining (NHEJ) repair.DNA ligase (LIG6) |