Gene: Duzib133G0659
General Information
Structural Information
- Species Durio zibethinus
- Gene Identifier Duzib133G0659
- Transcript Identifier Duzib133G0659.03
- Gene Type Coding gene
- Location NW_019167938.1 : 13182707-13194142 : positive
Gene Family Information
- ID HOM05D001934
- #Genes/#Species 342/100
- Phylogenetic origin
- ID ORTHO05D002139
- #Genes/#Species 313/100
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- name LOC111314657
- name XM_022916233.1
- pid XP_022771968.1
- id gene-LOC111314657
- uniprot A0A6P6B481
Descriptions
- product DNA ligase 6, transcript variant X2
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:2000685 | ISO | PLAZA Integrative Orthology | positive regulation of cellular response to X-ray | AT1G66730 |
| GO:0009845 | ISO | PLAZA Integrative Orthology | seed germination | AT1G66730 |
| GO:0006303 | ISO | PLAZA Integrative Orthology | double-strand break repair via nonhomologous end joining | AT1G66730 |
| GO:1904975 | ISO | PLAZA Integrative Orthology | response to bleomycin | AT1G66730 |
| GO:0010225 | ISO | PLAZA Integrative Orthology | response to UV-C | AT1G66730 |
| GO:0048316 | ISO | PLAZA Integrative Orthology | seed development | AT1G66730 |
| GO:0015074 | ISO | PLAZA Integrative Orthology | DNA integration | AT1G66730 |
| GO:0002237 | ISO | PLAZA Integrative Orthology | response to molecule of bacterial origin | AT1G66730 |
| GO:0009409 | ISO | PLAZA Integrative Orthology | response to cold | AT1G66730 |
| GO:0006979 | ISO | PLAZA Integrative Orthology | response to oxidative stress | AT1G66730 |
| GO:0006310 | IEA | GOA Database | DNA recombination | |
| GO:0006310 | IEA | InterPro | DNA recombination | |
| GO:0006281 | IEA | GOA Database | DNA repair | |
| GO:0006281 | IEA | InterPro | DNA repair | |
| GO:0006974 | IEA | GOA Database | cellular response to DNA damage stimulus | |
| GO:0006260 | IEA | GOA Database | DNA replication | |
| GO:0006266 | IEA | GOA Database | DNA ligation | |
| GO:0071897 | IEA | InterPro | DNA biosynthetic process |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003910 | IEA | GOA Database | DNA ligase (ATP) activity | |
| GO:0003910 | IEA | InterPro | DNA ligase (ATP) activity | |
| GO:0003677 | IEA | GOA Database | DNA binding | |
| GO:0003677 | IEA | InterPro | DNA binding | |
| GO:0005524 | IEA | GOA Database | ATP binding | |
| GO:0005524 | IEA | InterPro | ATP binding | |
| GO:0000166 | IEA | GOA Database | nucleotide binding | |
| GO:0016874 | IEA | GOA Database | ligase activity |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | IEA | GOA Database | nucleus |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR036599 | DNA ligase, ATP-dependent, N-terminal domain superfamily |
| IPR000977 | DNA ligase, ATP-dependent |
| IPR036866 | Ribonuclease Z/Hydroxyacylglutathione hydrolase-like |
| IPR012308 | DNA ligase, ATP-dependent, N-terminal |
| IPR012309 | DNA ligase, ATP-dependent, C-terminal |
| IPR012340 | Nucleic acid-binding, OB-fold |
| IPR011084 | DNA repair metallo-beta-lactamase |
| IPR012310 | DNA ligase, ATP-dependent, central |
| Mapman id | Description |
|---|---|
| 14.4.5 | DNA damage response.nonhomologous end-joining (NHEJ) repair.DNA ligase (LIG6) |