Gene: Sopen02g035770

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen02g035770
  • Transcript Identifier Sopen02g035770.2
  • Gene Type Coding gene
  • Location Spenn-ch02 : 56854413-56873618 : negative

Gene Family Information

  • ID HOM05D001934
  • #Genes/#Species 342/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen02g035770.2

Descriptions

  • Description Encodes a novel plant specific DNA ligase that is involved in seed germination and DNA repair. | DNA LIGASE 6 (LIG6) | FUNCTIONS IN: DNA binding, DNA ligase (ATP) activity, ATP binding | INVOLVED IN: DNA repair, seed germination, DNA recombination, DNA replication | LOCATED IN: chloroplast | EXPRESSED IN: 16 plant structures | EXPRESSED DURING: 9 growth stages | CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold , DNA ligase, N-terminal , DNA repair metallo-beta-lactamase , ATP dependent DNA ligase, central , ATP dependent DNA ligase, C-terminal , ATP-dependent DNA ligase , ATP-dependent DNA ligase, conserved site | BEST Arabidopsis thaliana protein match is: DNA ligase 1
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006281
IEA
InterProDNA repair
GO:0006310
IEA
InterProDNA recombination
GO:0071897
IEA
InterProDNA biosynthetic process
GO:0006979
ISO
PLAZA Integrative Orthologyresponse to oxidative stress AT1G66730
GO:0009409
ISO
PLAZA Integrative Orthologyresponse to cold AT1G66730
GO:0002237
ISO
PLAZA Integrative Orthologyresponse to molecule of bacterial origin AT1G66730
GO:0015074
ISO
PLAZA Integrative OrthologyDNA integration AT1G66730
GO:0048316
ISO
PLAZA Integrative Orthologyseed development AT1G66730
GO:0010225
ISO
PLAZA Integrative Orthologyresponse to UV-C AT1G66730
GO:1904975
ISO
PLAZA Integrative Orthologyresponse to bleomycin AT1G66730
GO:0006303
ISO
PLAZA Integrative Orthologydouble-strand break repair via nonhomologous end joining AT1G66730
GO:0009845
ISO
PLAZA Integrative Orthologyseed germination AT1G66730
GO:2000685
ISO
PLAZA Integrative Orthologypositive regulation of cellular response to X-ray AT1G66730

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003910
IEA
InterProDNA ligase (ATP) activity
GO:0005524
IEA
InterProATP binding
GO:0003677
IEA
InterProDNA binding

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR012310 DNA ligase, ATP-dependent, central
IPR012308 DNA ligase, ATP-dependent, N-terminal
IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like
IPR000977 DNA ligase, ATP-dependent
IPR036599 DNA ligase, ATP-dependent, N-terminal domain superfamily
IPR011084 DNA repair metallo-beta-lactamase
IPR012340 Nucleic acid-binding, OB-fold
IPR012309 DNA ligase, ATP-dependent, C-terminal
Mapman id Description
14.4.5 DNA damage response.nonhomologous end-joining (NHEJ) repair.DNA ligase (LIG6)