Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G42770 Arabidopsis lyrata HOM05D005707 ORTHO05D007276 0.0e+00 1875.5 933 100.0
AT2G05170 Arabidopsis thaliana HOM05D005707 ORTHO05D007276 0.0e+00 1813.1 933 96.2
Carub.0003s2668 Capsella rubella HOM05D005707 ORTHO05D007276 0.0e+00 1803.5 933 95.4
Sp3g23690 Schrenkiella parvula HOM05D005707 ORTHO05D007276 0.0e+00 1755.0 934 92.9
SpUn0142_0010 Schrenkiella parvula HOM05D005707 ORTHO05D007276 0.0e+00 1755.0 934 92.9
Thhalv10002393m.g Eutrema salsugineum HOM05D005707 ORTHO05D007276 0.0e+00 1753.4 934 93.3
CARHR103040 Cardamine hirsuta HOM05D005707 ORTHO05D007276 0.0e+00 1749.9 936 93.2
A07p06540 Brassica napus HOM05D005707 ORTHO05D007276 0.0e+00 1746.5 934 92.3
BraA07t28449Z Brassica rapa HOM05D005707 ORTHO05D007276 0.0e+00 1741.9 934 92.1
C07p09820 Brassica napus HOM05D005707 ORTHO05D007276 0.0e+00 1740.7 934 92.0
BcaC06g35905 Brassica carinata HOM05D005707 ORTHO05D007276 0.0e+00 1739.5 934 91.9
BolC7t41423H Brassica oleracea HOM05D005707 ORTHO05D007276 0.0e+00 1739.5 934 91.9
BcaB06g26833 Brassica carinata HOM05D005707 ORTHO05D007276 0.0e+00 1719.9 934 91.8
Aa31LG9G17700 Aethionema arabicum HOM05D005707 ORTHO05D007276 0.0e+00 1694.1 949 88.8
THA.LOC104808851 Tarenaya hassleriana HOM05D005707 ORTHO05D007276 0.0e+00 1609.0 944 85.4
PGR142G3494 Punica granatum HOM05D005707 ORTHO05D007276 0.0e+00 1548.9 937 80.6
Potri.014G165400 Populus trichocarpa HOM05D005707 ORTHO05D007276 0.0e+00 1546.9 948 81.0
Gorai.007G166700 Gossypium raimondii HOM05D005707 ORTHO05D007276 0.0e+00 1546.2 947 80.3
Gohir.D11G156360 Gossypium hirsutum HOM05D005707 ORTHO05D007276 0.0e+00 1545.0 947 80.1
Gohir.A11G149550 Gossypium hirsutum HOM05D005707 ORTHO05D007276 0.0e+00 1543.1 947 79.9
Sabra14G0126000 Salix brachista HOM05D005707 ORTHO05D007276 0.0e+00 1543.1 947 80.4
Haze_03608 Corylus avellana HOM05D005707 ORTHO05D007276 0.0e+00 1540.0 944 80.6
Manes.13G062700 Manihot esculenta HOM05D005707 ORTHO05D007276 0.0e+00 1537.3 943 80.6
Manes.12G065301 Manihot esculenta HOM05D005707 ORTHO05D007276 0.0e+00 1533.1 945 80.5
Cfa007084 Carpinus fangiana HOM05D005707 ORTHO05D007276 0.0e+00 1531.9 944 80.5
Dinv07863 Davidia involucrata HOM05D005707 ORTHO05D007276 0.0e+00 1531.2 945 80.2
Prupe.3G200600 Prunus persica HOM05D005707 ORTHO05D007276 0.0e+00 1525.8 944 79.8
Ciclev10018207m.g Citrus clementina HOM05D005707 ORTHO05D007276 0.0e+00 1523.1 941 79.9
CANSAT64G1567 Cannabis sativa HOM05D005707 ORTHO05D007276 0.0e+00 1520.4 946 79.9
Eucgr.A01050 Eucalyptus grandis HOM05D005707 ORTHO05D007276 0.0e+00 1519.2 942 79.0
Duzib138G1526 Durio zibethinus HOM05D005707 ORTHO05D007276 0.0e+00 1518.1 946 79.1
TAR626G1120 Trochodendron aralioides HOM05D005707 ORTHO05D007276 0.0e+00 1517.3 948 78.5
ClCG02G009340 Citrullus lanatus HOM05D005707 ORTHO05D007276 0.0e+00 1516.5 945 79.4
Atru.BG.42.p Acer truncatum HOM05D005707 ORTHO05D007276 0.0e+00 1516.1 939 79.4
MD17G1113900 Malus domestica HOM05D005707 ORTHO05D007276 0.0e+00 1512.3 950 78.7
CiPaw.07G002400 Carya illinoinensis HOM05D005707 ORTHO05D007276 0.0e+00 1510.0 944 79.9
CsaV3_6G009510 Cucumis sativus L. HOM05D005707 ORTHO05D007276 0.0e+00 1509.6 945 79.0
TWI75G1501 Tripterygium wilfordii HOM05D005707 ORTHO05D007276 0.0e+00 1509.2 945 79.5
MD09G1123500 Malus domestica HOM05D005707 ORTHO05D007276 0.0e+00 1508.8 947 79.2
RcHm_v2.0_Chr2g0156491 Rosa chinensis HOM05D005707 ORTHO05D007276 0.0e+00 1507.3 946 79.0
MELO3C025972.2 Cucumis melo HOM05D005707 ORTHO05D007276 0.0e+00 1506.9 945 79.2
FvH4_6g40910 Fragaria vesca HOM05D005707 ORTHO05D007276 0.0e+00 1503.4 943 79.3
FAN14G2372 Fragaria x ananassa HOM05D005707 ORTHO05D007276 0.0e+00 1502.3 943 79.2
Nn1g03422 Nelumbo nucifera HOM05D005707 ORTHO05D007276 0.0e+00 1501.1 946 77.7
FAN05G2777 Fragaria x ananassa HOM05D005707 ORTHO05D007276 0.0e+00 1500.3 944 79.3
Actinidia09778 Actinidia chinensis HOM05D005707 ORTHO05D007276 0.0e+00 1498.8 945 78.7
TWI18G1214 Tripterygium wilfordii HOM05D005707 ORTHO05D007276 0.0e+00 1498.8 944 78.5
QL06p053011 Quercus lobata HOM05D005707 ORTHO05D007276 0.0e+00 1498.4 957 78.0
CSS0003308 Camellia sinensis var. sinensis HOM05D005707 ORTHO05D007276 0.0e+00 1497.3 947 78.6
CSS0049316 Camellia sinensis var. sinensis HOM05D005707 ORTHO05D007276 0.0e+00 1497.3 947 78.6
Sed0013138 Sechium edule HOM05D005707 ORTHO05D007276 0.0e+00 1495.3 943 78.8
GSVIVG01030049001 Vitis vinifera HOM05D005707 ORTHO05D007276 0.0e+00 1494.9 943 78.9
FAN02G0692 Fragaria x ananassa HOM05D005707 ORTHO05D007276 0.0e+00 1490.3 943 78.5
Hma1.2p1_1267F.1_g271460 Hydrangea macrophylla HOM05D005707 ORTHO05D007276 0.0e+00 1489.2 943 77.7
MBI16_g36319_MAGBIO Magnolia biondii HOM05D005707 ORTHO05D007276 0.0e+00 1488.8 945 77.7
FAN09G4573 Fragaria x ananassa HOM05D005707 ORTHO05D007276 0.0e+00 1485.3 943 78.5
CAN.G308.64 Capsicum annuum HOM05D005707 ORTHO05D007276 0.0e+00 1482.2 945 76.7
Nitab4.5_0001082g0050 Nicotiana tabacum HOM05D005707 ORTHO05D007276 0.0e+00 1480.7 941 77.6
Rhsim06G0174400 Rhododendron simsii HOM05D005707 ORTHO05D007276 0.0e+00 1478.8 946 77.5
Sopen06g023670 Solanum pennellii HOM05D005707 ORTHO05D007276 0.0e+00 1478.8 944 76.9
PGSC0003DMG400026068 Solanum tuberosum HOM05D005707 ORTHO05D007276 0.0e+00 1478.8 943 76.5
Nn1g03246 Nelumbo nucifera HOM05D005707 ORTHO05D007276 0.0e+00 1478.4 946 76.7
Solyc06g065170.4 Solanum lycopersicum HOM05D005707 ORTHO05D007276 0.0e+00 1476.5 944 76.7
ECA240G2058 Erigeron canadensis HOM05D005707 ORTHO05D007276 0.0e+00 1473.4 938 77.3
Oeu040469.1 Olea europaea HOM05D005707 ORTHO05D007276 0.0e+00 1470.3 942 76.5
HanXRQChr03g0075251 Helianthus annuus HOM05D005707 ORTHO05D007276 0.0e+00 1469.9 939 76.8
Nitab4.5_0000303g0290 Nicotiana tabacum HOM05D005707 ORTHO05D007276 0.0e+00 1469.9 944 76.9
Lsat_1_v5_gn_0_5460 Lactuca sativa HOM05D005707 ORTHO05D007276 0.0e+00 1469.5 939 77.2
Lj8A134G73 Lonicera japonica HOM05D005707 ORTHO05D007276 0.0e+00 1468.0 940 77.3
Lj1C792T2 Lonicera japonica HOM05D005707 ORTHO05D007276 0.0e+00 1466.8 943 76.5
Sed0020801 Sechium edule HOM05D005707 ORTHO05D007276 0.0e+00 1466.8 945 76.9
Phvul.010G042100 Phaseolus vulgaris HOM05D005707 ORTHO05D007276 0.0e+00 1465.7 950 76.2
Ca_27368_v3 Cicer arietinum L. HOM05D005707 ORTHO05D007276 0.0e+00 1465.3 955 76.0
Lj1g0027558 Lotus japonicus HOM05D005707 ORTHO05D007276 0.0e+00 1464.5 953 76.0
Glyma.07G119500 Glycine max HOM05D005707 ORTHO05D007276 0.0e+00 1462.2 953 75.9
VMungo0331G1616 Vigna mungo HOM05D005707 ORTHO05D007276 0.0e+00 1462.2 950 76.1
MSTRG.14925 Avicennia marina HOM05D005707 ORTHO05D007276 0.0e+00 1461.4 948 76.6
PSO732G0538 Papaver somniferum HOM05D005707 ORTHO05D007276 0.0e+00 1461.0 941 76.3
Aqoxy2G03044 Aquilegia oxysepala HOM05D005707 ORTHO05D007276 0.0e+00 1459.9 947 76.0
Cc07_g12010 Coffea canephora HOM05D005707 ORTHO05D007276 0.0e+00 1459.9 943 77.0
Peaxi162Scf00268g00614 Petunia axillaris HOM05D005707 ORTHO05D007276 0.0e+00 1459.1 942 77.4
Glyma.03G104400 Glycine max HOM05D005707 ORTHO05D007276 0.0e+00 1456.8 952 75.5
Migut.M00030 Erythranthe guttata HOM05D005707 ORTHO05D007276 0.0e+00 1455.3 942 76.5
Lsat_1_v5_gn_9_90020 Lactuca sativa HOM05D005707 ORTHO05D007276 0.0e+00 1455.3 952 76.2
Medtr1g019500 Medicago truncatula HOM05D005707 ORTHO05D007276 0.0e+00 1454.5 955 75.7
TPR.G3804 Trifolium pratense HOM05D005707 ORTHO05D007276 0.0e+00 1453.0 953 75.7
arahy.Tifrunner.gnm1.ann1.T3MKLR Arachis hypogaea HOM05D005707 ORTHO05D007276 0.0e+00 1452.6 949 75.7
PSO675G5925 Papaver somniferum HOM05D005707 ORTHO05D007276 0.0e+00 1452.6 943 75.7
Lj6g0020016 Lotus japonicus HOM05D005707 ORTHO05D007276 0.0e+00 1448.0 955 75.4
Lalb_Chr19g0124221 Lupinus albus HOM05D005707 ORTHO05D007276 0.0e+00 1447.2 957 75.4
AUR62025658 Chenopodium quinoa HOM05D005707 ORTHO05D007276 0.0e+00 1441.8 938 76.5
AUR62001346 Chenopodium quinoa HOM05D005707 ORTHO05D007276 0.0e+00 1439.1 937 76.0
DCAR_012906 Daucus carota HOM05D005707 ORTHO05D007276 0.0e+00 1436.4 945 75.3
EL10Ac7g18165 Beta vulgaris HOM05D005707 ORTHO05D007276 0.0e+00 1434.9 938 76.0
arahy.Tifrunner.gnm1.ann1.DQM4AF Arachis hypogaea HOM05D005707 ORTHO05D007276 0.0e+00 1434.1 983 73.3
COL.COLO4_09234 Corchorus olitorius HOM05D005707 ORTHO05D007276 0.0e+00 1430.2 947 76.1
Hund18608 Selenicereus undatus HOM05D005707 ORTHO05D007276 0.0e+00 1426.4 951 74.1
vmacro12103 Vaccinium macrocarpon HOM05D005707 ORTHO05D007276 0.0e+00 1419.8 946 75.5
Ah.15g094340 Amaranthus hybridus HOM05D005707 ORTHO05D007276 0.0e+00 1416.4 940 75.0
ATR0626G192 Amborella trichopoda HOM05D005707 ORTHO05D007276 0.0e+00 1394.0 937 73.3
Os04g0382700 Oryza sativa ssp. japonica HOM05D005707 ORTHO05D007276 0.0e+00 1380.2 941 70.2
Zm00001eb420950 Zea mays HOM05D005707 ORTHO05D007276 0.0e+00 1372.1 952 69.2
SGA_v2.0_scaffold73G24514 Striga asiatica HOM05D005707 ORTHO05D007276 0.0e+00 1369.8 943 72.5
Thecc.01G191800 Theobroma cacao HOM05D005707 ORTHO05D007276 0.0e+00 1360.5 832 80.6
unitig_37.g12597 Utricularia gibba HOM05D005707 ORTHO05D007276 0.0e+00 1325.5 939 70.2
SEGI_38374 Sequoiadendron giganteum HOM05D005707 ORTHO05D007276 0.0e+00 1306.2 943 68.4
Oeu012343.5 Olea europaea HOM05D005707 ORTHO05D007276 0.0e+00 1277.3 935 69.5
DCAR_028089 Daucus carota HOM05D005707 ORTHO05D007276 0.0e+00 1265.0 854 74.2
Psat6g013160 Pisum sativum HOM05D005707 ORTHO05D007276 0.0e+00 1248.8 845 74.1
AagrBONN_evm.TU.Sc2ySwM_344.1573 Anthoceros agrestis HOM05D005707 ORTHO05D007276 0.0e+00 1174.5 952 61.7
Mapoly0022s0120 Marchantia polymorpha HOM05D005707 ORTHO05D007276 0.0e+00 1170.6 984 59.8
Lalb_Chr01g0023301 Lupinus albus HOM05D005707 ORTHO05D007276 0.0e+00 1167.1 735 78.1
Cpa.g.sc211.13 Carica papaya HOM05D005707 ORTHO05D007276 0.0e+00 1161.4 945 64.1
Sc15g0001000 Simmondsia chinensis HOM05D005707 ORTHO05D007276 0.0e+00 1110.9 699 78.3
Pp3c25_5560 Physcomitrium patens HOM05D005707 ORTHO05D007276 0.0e+00 1095.9 1005 54.8
SMO329G0026 Selaginella moellendorffii HOM05D005707 ORTHO05D007276 0.0e+00 1088.2 937 59.3
Hma1.2p1_2056F.1_g312820 Hydrangea macrophylla HOM05D005707 ORTHO05D007276 1.7e-291 1006.1 636 77.2
Hma1.2p1_1267F.1_g271470 Hydrangea macrophylla HOM05D005707 ORTHO05D007276 2.1e-289 999.2 634 77.0
CDE12G0215 Ceratophyllum demersum HOM05D005707 ORTHO05D007276 9.5e-266 920.6 701 64.8
CBR_g20017 Chara braunii HOM05D005707 ORTHO05D007276 2.4e-224 783.1 763 52.2
Lsat_1_v5_gn_9_104540 Lactuca sativa HOM05D005707 ORTHO05D007276 3.5e-199 699.5 463 74.5
HPP92_028369 Vanilla planifolia HOM05D005707 ORTHO05D007276 1.0e-179 634.8 442 71.0
HPP92_028368 Vanilla planifolia HOM05D005707 ORTHO05D007276 1.9e-120 438.0 303 68.6
PRCOL_00006472 Prasinoderma coloniale HOM05D005707 ORTHO05D007276 3.9e-110 403.7 631 38.8
Cre02.g095074 Chlamydomonas reinhardtii HOM05D005707 ORTHO05D007276 5.3e-107 393.3 1308 24.8
Lalb_Chr01g0023291 Lupinus albus HOM05D005707 ORTHO05D007276 2.8e-76 291.2 202 71.3
Nn6g32392 Nelumbo nucifera HOM05D005707 ORTHO05D007276 1.0e-73 282.7 207 70.5
HPP92_014038 Vanilla planifolia HOM05D005707 ORTHO05D007276 3.1e-59 234.6 181 66.9
SEGI_06176 Sequoiadendron giganteum HOM05D005707 ORTHO05D007276 2.4e-51 208.4 295 41.4
Nn6g32391 Nelumbo nucifera HOM05D005707 ORTHO05D007276 8.6e-49 199.9 110 84.5
Peaxi162Scf00585g00082 Petunia axillaris HOM05D000636 ORTHO05D002338 1.9e-43 182.2 116 75.9
HPP92_014037 Vanilla planifolia HOM05D005707 ORTHO05D048631 2.2e-36 158.7 139 59.0
HPP92_014036 Vanilla planifolia HOM05D005707 ORTHO05D007276 6.4e-36 157.1 104 67.3
Nn2g13354 Nelumbo nucifera HOM05D005707 ORTHO05D007276 6.4e-28 130.6 64 89.1
VMungo0331G0660 Vigna mungo HOM05D000100 ORTHO05D000052 3.1e-14 85.1 80 55.0


User provided reference genes

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