Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G41470 Arabidopsis lyrata HOM05D003148 ORTHO05D026836 2.8e-25 117.9 61 100.0
AL1G58530 Arabidopsis lyrata HOM05D003148 ORTHO05D003894 2.4e-24 114.8 60 96.7
AT1G50840 Arabidopsis thaliana HOM05D003148 ORTHO05D003894 4.1e-24 114.0 60 96.7
CARHR040890 Cardamine hirsuta HOM05D003148 ORTHO05D003894 4.1e-24 114.0 60 96.7
Thhalv10011195m.g Eutrema salsugineum HOM05D003148 ORTHO05D003894 1.2e-23 112.5 60 95.0
A05p19930 Brassica napus HOM05D003148 ORTHO05D003894 3.4e-23 110.9 60 91.7
BraA05t20898Z Brassica rapa HOM05D003148 ORTHO05D003894 3.4e-23 110.9 60 91.7
BcaC05g27391 Brassica carinata HOM05D003148 ORTHO05D003894 4.5e-23 110.5 60 90.0
Carub.0001s3979 Capsella rubella HOM05D003148 ORTHO05D003894 5.9e-23 110.2 60 93.3
Sp1g37600 Schrenkiella parvula HOM05D003148 ORTHO05D003894 5.9e-23 110.2 60 93.3
BcaB02g11185 Brassica carinata HOM05D003148 ORTHO05D003894 7.6e-23 109.8 60 90.0
C05p33280 Brassica napus HOM05D003148 ORTHO05D003894 1.0e-22 109.4 60 88.3
BolC5t32054H Brassica oleracea HOM05D003148 ORTHO05D003894 1.0e-22 109.4 60 88.3
THA.LOC104817879 Tarenaya hassleriana HOM05D003148 ORTHO05D003894 6.5e-22 106.7 59 88.1
CARHR096300 Cardamine hirsuta HOM05D003148 ORTHO05D003894 5.5e-21 103.6 59 86.4
Thhalv10019969m.g Eutrema salsugineum HOM05D003148 ORTHO05D003894 5.5e-21 103.6 59 84.7
Sp3g18540 Schrenkiella parvula HOM05D003148 ORTHO05D003894 5.5e-21 103.6 60 85.0
Aa31LG10G3300 Aethionema arabicum HOM05D003148 ORTHO05D003894 1.6e-20 102.1 60 81.7
A05p28320 Brassica napus HOM05D003148 ORTHO05D003894 2.1e-20 101.7 59 84.7
C05p43810 Brassica napus HOM05D003148 ORTHO05D003894 2.1e-20 101.7 59 84.7
BolC5t33096H Brassica oleracea HOM05D003148 ORTHO05D003894 2.1e-20 101.7 59 84.7
BraA05t21714Z Brassica rapa HOM05D003148 ORTHO05D003894 2.1e-20 101.7 59 84.7
Aa31LG8G7340 Aethionema arabicum HOM05D003148 ORTHO05D003894 1.1e-18 95.9 59 79.7
Thecc.07G043600 Theobroma cacao HOM05D003148 ORTHO05D003894 2.5e-18 94.7 58 79.3
Cc05_g13530 Coffea canephora HOM05D003148 ORTHO05D003894 5.7e-18 93.6 58 77.6
TWI38G0810 Tripterygium wilfordii HOM05D003148 ORTHO05D003894 5.7e-18 93.6 58 79.3
DCAR_022553 Daucus carota HOM05D003148 ORTHO05D003894 7.4e-18 93.2 58 75.9
Eucgr.F00964 Eucalyptus grandis HOM05D003148 ORTHO05D003894 7.4e-18 93.2 59 74.6
Solyc07g064330.3 Solanum lycopersicum HOM05D003148 ORTHO05D003894 7.4e-18 93.2 58 75.9
Sopen07g032480 Solanum pennellii HOM05D003148 ORTHO05D003894 7.4e-18 93.2 58 75.9
RhsimUnG0252100 Rhododendron simsii HOM05D003148 ORTHO05D003894 9.7e-18 92.8 58 75.9
Actinidia09911 Actinidia chinensis HOM05D003148 ORTHO05D003894 1.3e-17 92.4 58 74.1
Lj1C869T19 Lonicera japonica HOM05D003148 ORTHO05D003894 1.3e-17 92.4 58 75.9
ECA246G3119 Erigeron canadensis HOM05D003148 ORTHO05D003894 1.6e-17 92.0 58 75.9
Potri.001G421300 Populus trichocarpa HOM05D003148 ORTHO05D003894 1.6e-17 92.0 58 77.6
PGSC0003DMG402013919 Solanum tuberosum HOM05D003148 ORTHO05D003894 1.6e-17 92.0 58 75.9
COL.COLO4_09635 Corchorus olitorius HOM05D003148 ORTHO05D003894 2.2e-17 91.7 58 79.3
Rhsim04G0002300 Rhododendron simsii HOM05D003148 ORTHO05D003894 2.2e-17 91.7 58 74.1
Sc19g0008220 Simmondsia chinensis HOM05D003148 ORTHO05D003894 2.2e-17 91.7 58 74.1
Ah.13g076880 Amaranthus hybridus HOM05D001433 ORTHO05D005172 2.8e-17 91.3 58 74.1
CSS0002581 Camellia sinensis var. sinensis HOM05D003148 ORTHO05D003894 2.8e-17 91.3 60 73.3
CAN.G337.107 Capsicum annuum HOM05D003148 ORTHO05D003894 2.8e-17 91.3 58 75.9
SGA_v2.0_scaffold9G05063 Striga asiatica HOM05D003148 ORTHO05D003894 2.8e-17 91.3 59 72.9
ClCG10G005550 Citrullus lanatus HOM05D003148 ORTHO05D003894 3.7e-17 90.9 58 70.7
Sed0003151 Sechium edule HOM05D003148 ORTHO05D003894 3.7e-17 90.9 58 70.7
GSVIVG01014163001 Vitis vinifera HOM05D003148 ORTHO05D003894 3.7e-17 90.9 58 75.9
CsaV3_3G005270 Cucumis sativus L. HOM05D003148 ORTHO05D003894 4.8e-17 90.5 58 74.1
Gohir.A01G078100 Gossypium hirsutum HOM05D003148 ORTHO05D003894 4.8e-17 90.5 58 74.1
Gohir.D01G065200 Gossypium hirsutum HOM05D003148 ORTHO05D003894 4.8e-17 90.5 58 74.1
Gorai.002G086900 Gossypium raimondii HOM05D003148 ORTHO05D003894 4.8e-17 90.5 58 74.1
HanXRQChr05g0159091 Helianthus annuus HOM05D003148 ORTHO05D003894 4.8e-17 90.5 58 75.9
Nn1g07107 Nelumbo nucifera HOM05D003148 ORTHO05D003894 4.8e-17 90.5 59 76.3
vmacro09733 Vaccinium macrocarpon HOM05D003148 ORTHO05D003894 4.8e-17 90.5 58 74.1
MSTRG.14430 Avicennia marina HOM05D003148 ORTHO05D003894 6.3e-17 90.1 58 72.4
Carub.0003s2050 Capsella rubella HOM05D003148 ORTHO05D003894 6.3e-17 90.1 60 73.3
Duzib213G0065 Durio zibethinus HOM05D003148 ORTHO05D003894 6.3e-17 90.1 58 74.1
Nitab4.5_0000397g0350 Nicotiana tabacum HOM05D003148 ORTHO05D003894 6.3e-17 90.1 58 74.1
Nitab4.5_0000622g0240 Nicotiana tabacum HOM05D003148 ORTHO05D003894 6.3e-17 90.1 58 74.1
Nitab4.5_0013016g0020 Nicotiana tabacum HOM05D003148 ORTHO05D003894 6.3e-17 90.1 58 74.1
PGR083G0390 Punica granatum HOM05D003148 ORTHO05D003894 6.3e-17 90.1 58 74.1
Lsat_1_v5_gn_1_29100 Lactuca sativa HOM05D003148 ORTHO05D003894 8.2e-17 89.7 58 72.4
Oeu062599.1 Olea europaea HOM05D003148 ORTHO05D003894 8.2e-17 89.7 58 74.1
PSO541G1561 Papaver somniferum HOM05D003148 ORTHO05D003894 8.2e-17 89.7 59 74.6
PSO675G7850 Papaver somniferum HOM05D003148 ORTHO05D003894 8.2e-17 89.7 59 74.6
Sabra16G0286100 Salix brachista HOM05D003148 ORTHO05D003894 8.2e-17 89.7 58 75.9
Actinidia35330 Actinidia chinensis HOM05D003148 ORTHO05D003894 1.1e-16 89.4 58 70.7
MELO3C025395.2 Cucumis melo HOM05D003148 ORTHO05D003894 1.4e-16 89.0 58 72.4
Dinv40737 Davidia involucrata HOM05D003148 ORTHO05D003894 1.4e-16 89.0 58 72.4
Peaxi162Scf00450g00842 Petunia axillaris HOM05D003148 ORTHO05D003894 1.4e-16 89.0 58 74.1
Duzib170G0320 Durio zibethinus HOM05D003148 ORTHO05D003894 1.8e-16 88.6 58 72.4
Oeu042923.1 Olea europaea HOM05D003148 ORTHO05D003894 1.8e-16 88.6 58 74.1
TAR624G0017 Trochodendron aralioides HOM05D003148 ORTHO05D026836 1.8e-16 88.6 58 72.4
CSS0048264 Camellia sinensis var. sinensis HOM05D003148 ORTHO05D003894 2.4e-16 88.2 58 69.0
Hma1.2p1_0938F.1_g239220 Hydrangea macrophylla HOM05D003148 ORTHO05D003894 2.4e-16 88.2 58 72.4
EL10Ac3g07232 Beta vulgaris HOM05D003148 ORTHO05D003894 3.1e-16 87.8 58 70.7
TAR626G0663 Trochodendron aralioides HOM05D003148 ORTHO05D003894 3.1e-16 87.8 58 74.1
Atru.chr6.8 Acer truncatum HOM05D003148 ORTHO05D003894 4.1e-16 87.4 58 74.1
CiPaw.12G128200 Carya illinoinensis HOM05D003148 ORTHO05D003894 4.1e-16 87.4 58 74.1
Sabra11G0122800 Salix brachista HOM05D003148 ORTHO05D003894 4.1e-16 87.4 58 72.4
vmacro11740 Vaccinium macrocarpon HOM05D003148 ORTHO05D003894 4.1e-16 87.4 58 70.7
MSTRG.12966 Avicennia marina HOM05D003148 ORTHO05D003894 5.3e-16 87.0 58 70.7
Cpa.g.sc97.33 Carica papaya HOM05D003148 ORTHO05D003894 5.3e-16 87.0 58 72.4
Lj8A168T100 Lonicera japonica HOM05D003148 ORTHO05D003894 5.3e-16 87.0 58 69.0
Hund24589 Selenicereus undatus HOM05D003148 ORTHO05D003894 5.3e-16 87.0 58 69.0
Os08g0175300 Oryza sativa ssp. japonica HOM05D003148 ORTHO05D003894 9.0e-16 86.3 59 67.8
Rhsim06G0215400 Rhododendron simsii HOM05D003148 ORTHO05D003894 9.0e-16 86.3 58 69.0
ATR0752G224 Amborella trichopoda HOM05D003148 ORTHO05D003894 1.2e-15 85.9 58 70.7
Cfa020382 Carpinus fangiana HOM05D003148 ORTHO05D003894 1.2e-15 85.9 54 75.9
CDE05G0870 Ceratophyllum demersum HOM05D003148 ORTHO05D003894 1.2e-15 85.9 58 69.0
Ciclev10007282m.g Citrus clementina HOM05D003148 ORTHO05D003894 1.2e-15 85.9 58 72.4
Haze_09651 Corylus avellana HOM05D003148 ORTHO05D003894 1.2e-15 85.9 54 75.9
Hund19099 Selenicereus undatus HOM05D003148 ORTHO05D003894 1.2e-15 85.9 58 69.0
TAR624G0080 Trochodendron aralioides HOM05D003148 ORTHO05D003894 1.2e-15 85.9 58 70.7
AL3G34360 Arabidopsis lyrata HOM05D003148 ORTHO05D003894 1.5e-15 85.5 59 72.9
AT3G20540 Arabidopsis thaliana HOM05D003148 ORTHO05D003894 1.5e-15 85.5 59 72.9
Migut.H01840 Erythranthe guttata HOM05D003148 ORTHO05D003894 1.5e-15 85.5 58 67.2
Manes.14G165664 Manihot esculenta HOM05D003148 ORTHO05D003894 1.5e-15 85.5 58 72.4
Zm00001eb431790 Zea mays HOM05D003148 ORTHO05D003894 1.5e-15 85.5 59 67.8
AUR62018343 Chenopodium quinoa HOM05D003148 ORTHO05D003894 2.0e-15 85.1 58 72.4
RcHm_v2.0_Chr5g0038301 Rosa chinensis HOM05D003148 ORTHO05D003894 2.0e-15 85.1 58 69.0
CiPaw.11G187400 Carya illinoinensis HOM05D003148 ORTHO05D003894 2.6e-15 84.7 58 70.7
Atru.chr2.3280 Acer truncatum HOM05D003148 ORTHO05D003894 3.4e-15 84.3 58 72.4
Potri.011G136900 Populus trichocarpa HOM05D003148 ORTHO05D003894 4.5e-15 84.0 58 70.7
MD11G1221900 Malus domestica HOM05D003148 ORTHO05D003894 5.9e-15 83.6 58 69.0
Cfa020383 Carpinus fangiana HOM05D003148 ORTHO05D003894 7.7e-15 83.2 58 69.0
AUR62030324 Chenopodium quinoa HOM05D003148 ORTHO05D003894 1.3e-14 82.4 58 70.7
FAN16G3453 Fragaria x ananassa HOM05D003148 ORTHO05D003894 1.3e-14 82.4 58 65.5
FAN21G1173 Fragaria x ananassa HOM05D003148 ORTHO05D003894 1.3e-14 82.4 58 65.5
Glyma.02G289700 Glycine max HOM05D003148 ORTHO05D003894 1.3e-14 82.4 58 72.4
Aqoxy1G03292 Aquilegia oxysepala HOM05D003148 ORTHO05D003894 1.7e-14 82.0 58 65.5
Aqoxy3G04136 Aquilegia oxysepala HOM05D003148 ORTHO05D003894 1.7e-14 82.0 59 64.4
MBI02_g28334_MAGBIO Magnolia biondii HOM05D003148 ORTHO05D003894 1.7e-14 82.0 58 67.2
Prupe.4G209500 Prunus persica HOM05D003148 ORTHO05D003894 2.2e-14 81.6 58 67.2
Glyma.14G025300 Glycine max HOM05D003148 ORTHO05D003894 2.9e-14 81.3 58 70.7
Glyma.19G036300 Glycine max HOM05D003148 ORTHO05D003894 2.9e-14 81.3 58 70.7
arahy.Tifrunner.gnm1.ann1.5UV8SN Arachis hypogaea HOM05D003148 ORTHO05D003894 3.8e-14 80.9 58 69.0
arahy.Tifrunner.gnm1.ann1.IVZB0M Arachis hypogaea HOM05D003148 ORTHO05D003894 3.8e-14 80.9 58 69.0
FvH4_3g22230 Fragaria vesca HOM05D003148 ORTHO05D003894 3.8e-14 80.9 58 63.8
FAN11G2520 Fragaria x ananassa HOM05D003148 ORTHO05D003894 3.8e-14 80.9 58 63.8
Os08g0175600 Oryza sativa ssp. japonica HOM05D003148 ORTHO05D003894 3.8e-14 80.9 59 62.7
Phvul.008G265700 Phaseolus vulgaris HOM05D003148 ORTHO05D003894 3.8e-14 80.9 54 75.9
Zm00001eb414740 Zea mays HOM05D003148 ORTHO05D003894 3.8e-14 80.9 58 62.1
Lalb_Chr04g0248571 Lupinus albus HOM05D003148 ORTHO05D003894 6.5e-14 80.1 58 67.2
PSO017G6339 Papaver somniferum HOM05D003148 ORTHO05D003894 6.5e-14 80.1 58 65.5
VMungo0647G1963 Vigna mungo HOM05D003148 ORTHO05D003894 6.5e-14 80.1 54 75.9
CDE01G0619 Ceratophyllum demersum HOM05D003148 ORTHO05D003894 1.1e-13 79.3 58 65.5
Medtr5g092100 Medicago truncatula HOM05D003148 ORTHO05D003894 1.1e-13 79.3 58 65.5
PSO478G0587 Papaver somniferum HOM05D003148 ORTHO05D003894 1.1e-13 79.3 58 67.2
Haze_09649 Corylus avellana HOM05D003148 ORTHO05D003894 1.4e-13 79.0 58 65.5
QL08p011843 Quercus lobata HOM05D003148 ORTHO05D003894 1.9e-13 78.6 58 65.5
SEGI_28554 Sequoiadendron giganteum HOM05D003148 ORTHO05D003894 2.5e-13 78.2 59 62.7
arahy.Tifrunner.gnm1.ann1.FV4ICK Arachis hypogaea HOM05D003148 ORTHO05D003894 4.2e-13 77.4 58 67.2
arahy.Tifrunner.gnm1.ann1.SAW44B Arachis hypogaea HOM05D003148 ORTHO05D003894 5.5e-13 77.0 58 65.5
Lj4g0014990 Lotus japonicus HOM05D003148 ORTHO05D003894 5.5e-13 77.0 58 69.0
TPR.G16585 Trifolium pratense HOM05D003148 ORTHO05D003894 5.5e-13 77.0 58 69.0
TPR.G29117 Trifolium pratense HOM05D003148 ORTHO05D003894 5.5e-13 77.0 58 65.5
Ca_06307_v3 Cicer arietinum L. HOM05D003148 ORTHO05D003894 9.4e-13 76.3 58 65.5
Psat2g015200 Pisum sativum HOM05D003148 ORTHO05D003894 1.6e-12 75.5 58 62.1
Lj6g0019529 Lotus japonicus HOM05D003148 ORTHO05D003894 2.7e-12 74.7 54 68.5
Medtr3g050110 Medicago truncatula HOM05D003148 ORTHO05D003894 2.7e-12 74.7 58 67.2
Ca_14812_v3 Cicer arietinum L. HOM05D003148 ORTHO05D003894 4.6e-12 73.9 58 67.2
Psat5g183240 Pisum sativum HOM05D003148 ORTHO05D003894 4.6e-12 73.9 58 69.0
Medtr3g050140 Medicago truncatula HOM05D003148 ORTHO05D003894 6.1e-12 73.6 58 67.2
Lalb_Chr18g0049911 Lupinus albus HOM05D003148 ORTHO05D003894 1.8e-11 72.0 58 62.1
Phvul.006G039400 Phaseolus vulgaris HOM05D003148 ORTHO05D003894 1.8e-11 72.0 58 62.1
Pp3c24_16390 Physcomitrium patens HOM05D003148 ORTHO05D003894 6.7e-11 70.1 60 56.7
SHI31845 Sapria himalayana HOM05D003148 ORTHO05D003894 6.7e-11 70.1 54 64.8
Glyma.08G313400 Glycine max HOM05D003148 ORTHO05D003894 8.8e-11 69.7 58 60.3
CBR_g50948 Chara braunii HOM05D003148 ORTHO05D003894 2.0e-10 68.6 61 55.7
MCO10G006 Micromonas commoda HOM05D003148 ORTHO05D003894 3.3e-10 67.8 61 57.4
AagrBONN_evm.TU.Sc2ySwM_228.5326 Anthoceros agrestis HOM05D003148 ORTHO05D003894 5.7e-10 67.0 60 55.0
Pp3c8_21620 Physcomitrium patens HOM05D003148 ORTHO05D003894 2.8e-09 64.7 60 53.3
Lj6A79G4 Lonicera japonica HOM05D003148 ORTHO05D003894 3.7e-09 64.3 58 48.3
Pp3c14_14550 Physcomitrium patens HOM05D003148 ORTHO05D003894 4.8e-09 63.9 60 55.0
SMO356G0432 Selaginella moellendorffii HOM05D003148 ORTHO05D003894 6.3e-09 63.5 61 54.1
SEGI_31566 Sequoiadendron giganteum HOM05D003148 ORTHO05D003894 8.2e-09 63.2 73 47.9
Lsat_1_v5_gn_6_61201 Lactuca sativa HOM05D003148 ORTHO05D026836 1.1e-08 62.8 43 67.4
Lju760A7G19 Lonicera japonica HOM05D003148 ORTHO05D026836 1.8e-08 62.0 58 44.8
PRCOL_00004837 Prasinoderma coloniale HOM05D003148 ORTHO05D003894 2.4e-08 61.6 61 47.5
Mapoly0039s0093 Marchantia polymorpha HOM05D003148 ORTHO05D003894 9.1e-08 59.7 61 50.8


User provided reference genes

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