Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G34700 Arabidopsis lyrata HOM05D004763 ORTHO05D007492 0.0e+00 1312.0 671 100.0
AT3G20780 Arabidopsis thaliana HOM05D004763 ORTHO05D007492 0.0e+00 1288.9 671 98.5
Carub.0003s2074 Capsella rubella HOM05D004763 ORTHO05D007492 0.0e+00 1277.7 671 97.3
BcaC05g28282 Brassica carinata HOM05D004763 ORTHO05D007492 0.0e+00 1241.9 669 95.1
BcaB06g26148 Brassica carinata HOM05D004763 ORTHO05D007492 0.0e+00 1241.5 676 94.7
C05p43300 Brassica napus HOM05D004763 ORTHO05D007492 0.0e+00 1241.1 669 94.9
Thhalv10020214m.g Eutrema salsugineum HOM05D004763 ORTHO05D007492 0.0e+00 1232.2 674 95.0
Sp3g18800 Schrenkiella parvula HOM05D004763 ORTHO05D007492 0.0e+00 1229.9 672 94.2
A05p28000 Brassica napus HOM05D004763 ORTHO05D007492 0.0e+00 1226.5 683 93.1
BraA05t21683Z Brassica rapa HOM05D004763 ORTHO05D007492 0.0e+00 1219.9 691 92.0
BolC5t33062H Brassica oleracea HOM05D004763 ORTHO05D007492 0.0e+00 1212.6 700 90.3
THA.LOC104816912 Tarenaya hassleriana HOM05D004763 ORTHO05D007492 0.0e+00 1181.0 669 88.8
Gohir.A13G215400 Gossypium hirsutum HOM05D004763 ORTHO05D007492 0.0e+00 1117.4 664 84.3
Gorai.013G250000 Gossypium raimondii HOM05D004763 ORTHO05D007492 0.0e+00 1116.7 671 83.6
Aa31LG8G7590 Aethionema arabicum HOM05D004763 ORTHO05D007492 0.0e+00 1116.3 652 88.8
Gohir.D13G219100 Gossypium hirsutum HOM05D004763 ORTHO05D007492 0.0e+00 1116.3 671 83.5
Thecc.09G223100 Theobroma cacao HOM05D004763 ORTHO05D007492 0.0e+00 1107.8 668 83.1
Sc09g0000480 Simmondsia chinensis HOM05D004763 ORTHO05D007492 0.0e+00 1105.1 661 83.1
Potri.003G211000 Populus trichocarpa HOM05D004763 ORTHO05D007492 0.0e+00 1104.0 662 83.2
MELO3C014639.2 Cucumis melo HOM05D004763 ORTHO05D007492 0.0e+00 1101.7 662 82.9
GSVIVG01025336001 Vitis vinifera HOM05D004763 ORTHO05D007492 0.0e+00 1101.7 661 83.5
CiPaw.14G125100 Carya illinoinensis HOM05D004763 ORTHO05D007492 0.0e+00 1100.1 662 83.2
TWI34G0672 Tripterygium wilfordii HOM05D004763 ORTHO05D007492 0.0e+00 1096.6 663 82.4
CsaV3_4G023800 Cucumis sativus L. HOM05D004763 ORTHO05D007492 0.0e+00 1095.5 662 82.8
CSS0044360 Camellia sinensis var. sinensis HOM05D004763 ORTHO05D007492 0.0e+00 1094.7 668 81.7
Medtr2g098510 Medicago truncatula HOM05D004763 ORTHO05D007492 0.0e+00 1093.2 661 82.8
TAR623G1126 Trochodendron aralioides HOM05D004763 ORTHO05D007492 0.0e+00 1092.8 659 82.7
Ciclev10014511m.g Citrus clementina HOM05D004763 ORTHO05D007492 0.0e+00 1092.4 667 82.5
CANSAT54G1729 Cannabis sativa HOM05D004763 ORTHO05D007492 0.0e+00 1089.7 668 83.2
QL01p006243 Quercus lobata HOM05D004763 ORTHO05D007492 0.0e+00 1089.7 663 83.1
Cc01_g04070 Coffea canephora HOM05D004763 ORTHO05D007492 0.0e+00 1087.8 659 82.1
arahy.Tifrunner.gnm1.ann1.P0K6XU Arachis hypogaea HOM05D004763 ORTHO05D007492 0.0e+00 1087.4 663 82.5
COL.COLO4_09893 Corchorus olitorius HOM05D004763 ORTHO05D007492 0.0e+00 1087.4 663 82.2
Glyma.13G342900 Glycine max HOM05D004763 ORTHO05D007492 0.0e+00 1087.0 661 82.6
Haze_23044 Corylus avellana HOM05D004763 ORTHO05D007492 0.0e+00 1086.6 665 82.4
Lalb_Chr14g0372291 Lupinus albus HOM05D004763 ORTHO05D007492 0.0e+00 1086.2 662 83.4
Manes.14G014500 Manihot esculenta HOM05D004763 ORTHO05D007492 0.0e+00 1086.2 662 82.3
arahy.Tifrunner.gnm1.ann1.VYK1P0 Arachis hypogaea HOM05D004763 ORTHO05D007492 0.0e+00 1085.9 663 82.2
Phvul.005G150500 Phaseolus vulgaris HOM05D004763 ORTHO05D007492 0.0e+00 1085.1 661 83.1
Sed0013957 Sechium edule HOM05D004763 ORTHO05D007492 0.0e+00 1084.7 661 82.0
Dinv36304 Davidia involucrata HOM05D004763 ORTHO05D007492 0.0e+00 1084.3 661 81.8
arahy.Tifrunner.gnm1.ann1.GN3GFY Arachis hypogaea HOM05D004763 ORTHO05D007492 0.0e+00 1083.9 663 82.1
CARHR096610 Cardamine hirsuta HOM05D004763 ORTHO05D007492 0.0e+00 1083.2 593 93.3
Cpa.g.sc84.111 Carica papaya HOM05D004763 ORTHO05D007492 0.0e+00 1082.0 689 79.8
Psat5g288480 Pisum sativum HOM05D004763 ORTHO05D007492 0.0e+00 1082.0 661 82.0
Hma1.2p1_1169F.1_g263300 Hydrangea macrophylla HOM05D004763 ORTHO05D007492 0.0e+00 1079.3 661 81.2
Hund22081 Selenicereus undatus HOM05D004763 ORTHO05D007492 0.0e+00 1079.3 661 81.7
Nn7g36058 Nelumbo nucifera HOM05D004763 ORTHO05D007492 0.0e+00 1076.6 662 81.7
Sabra03G0153800 Salix brachista HOM05D004763 ORTHO05D007492 0.0e+00 1076.2 649 82.9
Sabra03G0156000 Salix brachista HOM05D004763 ORTHO05D007492 0.0e+00 1076.2 649 82.9
TPR.G18851 Trifolium pratense HOM05D004763 ORTHO05D007492 4.6e-312 1074.7 655 82.6
HanXRQChr14g0451781 Helianthus annuus HOM05D004763 ORTHO05D007492 4.6e-312 1074.3 663 81.9
PSO339G3791 Papaver somniferum HOM05D004763 ORTHO05D007492 1.4e-311 1072.4 662 81.9
VMungo1080G1755 Vigna mungo HOM05D004763 ORTHO05D007492 4.5e-310 1067.4 645 82.9
ECA238G4453 Erigeron canadensis HOM05D004763 ORTHO05D007492 7.7e-310 1066.6 663 81.4
Eucgr.B03662 Eucalyptus grandis HOM05D004763 ORTHO05D007492 7.7e-310 1066.6 662 80.5
EL10Ac4g10318 Beta vulgaris HOM05D004763 ORTHO05D007492 1.9e-308 1062.0 659 81.3
arahy.Tifrunner.gnm1.ann1.X75IXN Arachis hypogaea HOM05D004763 ORTHO05D007492 4.2e-308 1060.8 701 77.3
AUR62019250 Chenopodium quinoa HOM05D004763 ORTHO05D007492 5.5e-308 1060.4 670 81.2
Duzib150G1218 Durio zibethinus HOM05D004763 ORTHO05D007492 5.5e-308 1060.4 694 78.8
Peaxi162Scf00773g00119 Petunia axillaris HOM05D004763 ORTHO05D007492 5.5e-308 1060.4 666 80.8
Prupe.6G018600 Prunus persica HOM05D004763 ORTHO05D007492 9.5e-308 1059.7 679 78.6
Sopen01g009200 Solanum pennellii HOM05D004763 ORTHO05D007492 1.6e-307 1058.9 659 80.0
Lj3g0020649 Lotus japonicus HOM05D004763 ORTHO05D007492 2.1e-307 1058.5 662 80.4
Solyc01g014490.4 Solanum lycopersicum HOM05D004763 ORTHO05D007492 1.0e-306 1056.2 658 79.8
FvH4_3g43550 Fragaria vesca HOM05D004763 ORTHO05D007492 2.2e-304 1048.5 658 78.7
MD03G1021100 Malus domestica HOM05D004763 ORTHO05D007492 8.3e-304 1046.6 661 78.7
Aqoxy1G00185 Aquilegia oxysepala HOM05D004763 ORTHO05D007492 2.4e-303 1045.0 661 79.0
PGR102G0325 Punica granatum HOM05D004763 ORTHO05D007492 7.0e-303 1043.5 668 79.2
Nitab4.5_0006575g0020 Nicotiana tabacum HOM05D004763 ORTHO05D007492 2.7e-302 1041.6 691 78.0
RcHm_v2.0_Chr5g0078101 Rosa chinensis HOM05D004763 ORTHO05D007492 4.5e-302 1040.8 664 78.0
Migut.D00558 Erythranthe guttata HOM05D004763 ORTHO05D007492 7.3e-300 1033.5 664 77.7
FAN16G3272 Fragaria x ananassa HOM05D004763 ORTHO05D007492 9.5e-300 1033.1 668 77.1
Nitab4.5_0003069g0050 Nicotiana tabacum HOM05D004763 ORTHO05D007492 3.6e-299 1031.2 678 78.8
HPP92_020536 Vanilla planifolia HOM05D004763 ORTHO05D007492 6.1e-299 1030.4 663 77.7
ATR0605G091 Amborella trichopoda HOM05D004763 ORTHO05D007492 4.9e-296 1020.8 666 78.1
CDE04G0998 Ceratophyllum demersum HOM05D004763 ORTHO05D007492 4.3e-292 1007.7 641 78.3
Os09g0279600 Oryza sativa ssp. japonica HOM05D004763 ORTHO05D007492 8.9e-290 1000.0 647 75.9
SGA_v2.0_scaffold1G00797 Striga asiatica HOM05D004763 ORTHO05D007492 2.0e-289 998.8 721 71.8
Rhsim01G0189300 Rhododendron simsii HOM05D004763 ORTHO05D007492 6.6e-285 983.8 745 70.5
Lsat_1_v5_gn_2_101121 Lactuca sativa HOM05D004763 ORTHO05D007492 2.9e-280 968.4 683 74.1
Actinidia39377 Actinidia chinensis HOM05D004763 ORTHO05D007492 3.3e-276 954.9 661 74.1
Ah.04g161760 Amaranthus hybridus HOM05D004763 ORTHO05D007492 1.9e-271 939.1 672 73.7
AagrBONN_evm.TU.Sc2ySwM_344.3405 Anthoceros agrestis HOM05D004763 ORTHO05D007492 1.6e-270 936.0 644 71.9
Pp3c22_12720 Physcomitrium patens HOM05D004763 ORTHO05D007492 3.5e-270 934.9 664 71.2
Ca_01270_v3 Cicer arietinum L. HOM05D004763 ORTHO05D007492 1.0e-269 933.3 595 79.3
Atru.chr3.2503 Acer truncatum HOM05D004763 ORTHO05D007492 4.3e-268 927.9 581 78.5
Mapoly0042s0060 Marchantia polymorpha HOM05D004763 ORTHO05D007492 1.2e-267 926.4 668 70.4
SMO116G0144 Selaginella moellendorffii HOM05D004763 ORTHO05D007492 7.6e-265 917.1 650 71.2
DCAR_024396 Daucus carota HOM05D004763 ORTHO05D007492 1.3e-259 899.8 663 71.3
CBR_g31022 Chara braunii HOM05D004763 ORTHO05D007492 6.2e-259 897.5 672 67.3
Aqoxy381s001 Aquilegia oxysepala HOM05D004763 ORTHO05D007492 1.3e-251 873.2 654 69.7
Lj4g0010878 Lotus japonicus HOM05D004763 ORTHO05D007492 2.8e-251 872.1 662 69.3
Hma1.2p1_1169F.1_g263310 Hydrangea macrophylla HOM05D004763 ORTHO05D007492 5.3e-250 867.8 509 82.5
FAN21G2003 Fragaria x ananassa HOM05D004763 ORTHO05D007492 1.9e-244 849.4 632 69.6
FAN11G2145 Fragaria x ananassa HOM05D004763 ORTHO05D007492 6.2e-243 844.3 696 64.7
FAN11G0713 Fragaria x ananassa HOM05D004763 ORTHO05D007492 5.5e-239 831.2 695 63.7
Potri.T085401 Populus trichocarpa HOM05D004763 ORTHO05D007492 5.7e-228 794.7 443 87.4
Zm00001eb308780 Zea mays HOM05D004763 ORTHO05D007492 3.6e-206 722.2 465 75.3
Cre01.g019750 Chlamydomonas reinhardtii HOM05D004763 ORTHO05D007492 1.3e-200 703.7 687 54.1
MCO09G243 Micromonas commoda HOM05D004763 ORTHO05D007492 7.0e-178 628.2 673 51.1
Lsat_1_v5_gn_1_127001 Lactuca sativa HOM05D004763 ORTHO05D007492 1.2e-177 627.5 535 63.4
PRCOL_00005940 Prasinoderma coloniale HOM05D004763 ORTHO05D007492 1.7e-171 607.1 668 50.6
SEGI_32015 Sequoiadendron giganteum HOM05D004763 ORTHO05D007492 1.9e-170 603.6 382 76.4
ClCG02G023620 Citrullus lanatus HOM05D004763 ORTHO05D007492 1.6e-166 590.5 363 81.5
MBI01_g15753_MAGBIO Magnolia biondii HOM05D004763 ORTHO05D007492 2.3e-165 586.6 355 82.3
CAN.G646.1 Capsicum annuum HOM05D004763 ORTHO05D007492 3.0e-160 569.7 353 81.0
PGSC0003DMG401029907 Solanum tuberosum HOM05D004763 ORTHO05D007492 9.5e-159 564.7 374 77.3
Lju1319A4T15 Lonicera japonica HOM05D004763 ORTHO05D007492 3.3e-143 513.1 304 82.9
PGSC0003DMG402029907 Solanum tuberosum HOM05D004763 ORTHO05D007492 2.7e-137 493.4 304 78.9
Lj1A366T12 Lonicera japonica HOM05D004763 ORTHO05D007492 8.7e-136 488.4 382 68.3
CAN.G442.1 Capsicum annuum HOM05D004763 ORTHO05D007492 2.5e-135 486.9 306 78.4
Lsat_1_v5_gn_1_127121 Lactuca sativa HOM05D004763 ORTHO05D007492 8.1e-134 481.9 630 48.6
Lj1C366G5 Lonicera japonica HOM05D004763 ORTHO05D007492 9.4e-114 415.2 296 73.0
Lsat_1_v5_gn_1_126981 Lactuca sativa HOM05D004763 ORTHO05D007492 9.1e-109 398.7 467 51.6
Actinidia06319 Actinidia chinensis HOM05D004763 ORTHO05D007492 1.4e-80 305.1 213 71.8
SEGI_39045 Sequoiadendron giganteum HOM05D004763 ORTHO05D007492 2.2e-78 297.7 215 70.2
Eucgr.B03660 Eucalyptus grandis HOM05D004763 ORTHO05D007492 4.4e-63 246.9 175 72.6
TPR.G29743 Trifolium pratense HOM05D004763 ORTHO05D007492 7.5e-55 219.5 219 58.0
Lju1319C4G3 Lonicera japonica HOM05D004763 ORTHO05D014896 9.8e-55 219.2 234 56.8
Oeu036968.1 Olea europaea HOM05D004763 ORTHO05D007492 2.3e-51 208.0 104 90.4
Lsat_1_v5_gn_1_126941 Lactuca sativa HOM05D004763 ORTHO05D007492 4.3e-50 203.8 148 67.6
TPR.G29742 Trifolium pratense HOM05D004763 ORTHO05D007492 3.6e-49 200.7 249 49.0
Aa31LG8G7550 Aethionema arabicum HOM05D004763 ORTHO05D007492 7.3e-42 176.4 546 35.0
Lsat_1_v5_gn_1_127161 Lactuca sativa HOM05D004763 ORTHO05D007492 1.3e-35 155.6 175 51.4
Ca_01269_v3 Cicer arietinum L. HOM05D000073 ORTHO05D000033 4.3e-34 150.6 86 89.5
Lsat_1_v5_gn_1_127201 Lactuca sativa HOM05D004763 ORTHO05D007492 1.3e-33 149.1 401 31.4
MBI09_g40619_MAGBIO Magnolia biondii HOM05D004763 ORTHO05D019264 5.8e-31 140.2 87 77.0
MBI04_g09599_MAGBIO Magnolia biondii HOM05D000103 ORTHO05D019264 2.2e-30 138.3 87 75.9
MBI02_g24793_MAGBIO Magnolia biondii HOM05D000103 ORTHO05D019264 1.9e-29 135.2 87 74.7
Thecc.03G073800 Theobroma cacao HOM05D004763 ORTHO05D019264 4.3e-26 124.0 98 62.2
PGSC0003DMG400012096 Solanum tuberosum HOM05D004763 ORTHO05D014896 1.3e-25 122.5 86 74.4
PGSC0003DMG401017076 Solanum tuberosum HOM05D004763 ORTHO05D026177 4.5e-23 114.0 114 51.8
arahy.Tifrunner.gnm1.ann1.50I1V9 Arachis hypogaea HOM05D004763 ORTHO05D014896 5.4e-21 107.1 68 83.8
arahy.Tifrunner.gnm1.ann1.G1IAFF Arachis hypogaea HOM05D004763 ORTHO05D014896 2.7e-20 104.8 82 70.7
arahy.Tifrunner.gnm1.ann1.F7UR4V Arachis hypogaea HOM05D004763 ORTHO05D014896 3.5e-20 104.4 68 80.9
Lsat_1_v5_gn_3_118680 Lactuca sativa HOM05D004763 ORTHO05D007492 1.5e-18 99.0 55 85.5
PGSC0003DMG400026817 Solanum tuberosum HOM05D004763 ORTHO05D026177 1.2e-15 89.4 82 62.2
Sopen04g015550 Solanum pennellii HOM05D000004 ORTHO05D000002 1.0e-14 86.3 97 55.7
arahy.Tifrunner.gnm1.ann1.65KXHR Arachis hypogaea HOM05D004763 ORTHO05D014896 1.7e-14 85.5 49 89.8
Lju1319A4T14 Lonicera japonica HOM05D004763 ORTHO05D019264 1.7e-14 85.5 69 62.3
Aa31LG8G7540 Aethionema arabicum HOM05D004763 ORTHO05D007492 3.8e-14 84.3 71 67.6
Lsat_1_v5_gn_1_125620 Lactuca sativa HOM05D004763 ORTHO05D007492 4.9e-14 84.0 174 35.1
TWI60G1170 Tripterygium wilfordii HOM05D004763 ORTHO05D014896 6.5e-14 83.6 49 85.7
arahy.Tifrunner.gnm1.ann1.YT3XVJ Arachis hypogaea HOM05D012186 ORTHO05D009594 3.2e-13 81.3 83 59.0
Solyc11g028310.3 Solanum lycopersicum HOM05D004763 ORTHO05D026177 2.3e-11 75.1 63 66.7
PGSC0003DMG400019106 Solanum tuberosum HOM05D004763 ORTHO05D007492 9.6e-10 69.7 37 86.5
Lsat_1_v5_gn_1_126960 Lactuca sativa HOM05D004763 ORTHO05D012314 1.3e-09 69.3 68 48.5
Solyc12g036030.1 Solanum lycopersicum HOM05D004763 ORTHO05D026177 3.1e-08 64.7 105 41.9
Solyc11g028340.3 Solanum lycopersicum HOM05D004763 ORTHO05D019264 4.1e-08 64.3 43 65.1
Lsat_1_v5_gn_8_146221 Lactuca sativa HOM05D004763 ORTHO05D014896 2.2e-06 58.5 40 77.5
Solyc11g028350.1 Solanum lycopersicum HOM05D004763 ORTHO05D019264 6.5e-06 57.0 40 60.0
PGSC0003DMG402017076 Solanum tuberosum HOM05D004763 ORTHO05D026177 8.4e-06 56.6 46 67.4


User provided reference genes

Program Settings