Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G56960 Arabidopsis lyrata HOM05D006779 ORTHO05D008491 3.0e-121 438.7 259 100.0
AT1G49590 Arabidopsis thaliana HOM05D006779 ORTHO05D008491 4.0e-105 385.2 259 87.6
Carub.0001s3879 Capsella rubella HOM05D006779 ORTHO05D008491 7.8e-101 370.9 262 87.0
Thhalv10011741m.g Eutrema salsugineum HOM05D006779 ORTHO05D008491 3.6e-98 362.1 261 80.1
Sp1g36470 Schrenkiella parvula HOM05D006779 ORTHO05D008491 1.2e-96 357.1 261 78.5
A06p03540 Brassica napus HOM05D006779 ORTHO05D008491 9.6e-91 337.4 262 75.6
BolC6t35591H Brassica oleracea HOM05D006779 ORTHO05D008491 1.4e-89 333.6 259 75.7
BraA06t23562Z Brassica rapa HOM05D006779 ORTHO05D008491 2.0e-88 329.7 260 75.4
Aa31LG10G4420 Aethionema arabicum HOM05D006779 ORTHO05D008491 6.6e-84 314.7 268 69.0
BcaNung06359 Brassica carinata HOM05D006779 ORTHO05D008491 1.3e-76 290.4 262 68.7
C06p04620 Brassica napus HOM05D006779 ORTHO05D008491 8.4e-63 244.6 216 72.7
Dinv23582 Davidia involucrata HOM05D006779 ORTHO05D008491 2.5e-54 216.5 268 54.1
Potri.009G105500 Populus trichocarpa HOM05D006779 ORTHO05D008491 2.5e-54 216.5 270 53.7
CsaV3_7G008730 Cucumis sativus L. HOM05D006779 ORTHO05D008491 7.2e-54 214.9 270 53.7
Sabra09G0080600 Salix brachista HOM05D006779 ORTHO05D008491 9.4e-54 214.5 268 55.2
Gohir.A03G191700 Gossypium hirsutum HOM05D006779 ORTHO05D008491 1.6e-53 213.8 266 58.3
Prupe.8G119200 Prunus persica HOM05D006779 ORTHO05D008491 2.1e-53 213.4 268 55.6
Sed0011670 Sechium edule HOM05D006779 ORTHO05D008491 2.7e-53 213.0 268 53.4
Manes.15G142500 Manihot esculenta HOM05D006779 ORTHO05D008491 3.6e-53 212.6 268 54.1
Actinidia00459 Actinidia chinensis HOM05D006779 ORTHO05D008491 4.6e-53 212.2 264 50.4
MD05G1075500 Malus domestica HOM05D006779 ORTHO05D008491 4.6e-53 212.2 266 54.9
QL11p037315 Quercus lobata HOM05D006779 ORTHO05D008491 6.1e-53 211.8 270 55.6
AUR62034187 Chenopodium quinoa HOM05D006779 ORTHO05D008491 7.9e-53 211.5 259 57.9
FvH4_2g06680 Fragaria vesca HOM05D006779 ORTHO05D008491 3.0e-52 209.5 266 54.1
Gorai.005G240600 Gossypium raimondii HOM05D006779 ORTHO05D008491 3.0e-52 209.5 266 57.5
Gohir.D02G212600 Gossypium hirsutum HOM05D006779 ORTHO05D008491 3.9e-52 209.1 266 57.5
FAN24G0787 Fragaria x ananassa HOM05D006779 ORTHO05D008491 6.7e-52 208.4 266 53.8
Nn5g30192 Nelumbo nucifera HOM05D006779 ORTHO05D008491 8.8e-52 208.0 266 57.1
FAN15G3147 Fragaria x ananassa HOM05D006779 ORTHO05D008491 1.5e-51 207.2 266 53.0
FAN20G2937 Fragaria x ananassa HOM05D006779 ORTHO05D008491 3.3e-51 206.1 266 52.6
RcHm_v2.0_Chr6g0258731 Rosa chinensis HOM05D006779 ORTHO05D008491 4.3e-51 205.7 266 51.9
Migut.B00314 Erythranthe guttata HOM05D006779 ORTHO05D008491 7.4e-51 204.9 267 52.8
GSVIVG01031784001 Vitis vinifera HOM05D006779 ORTHO05D008491 7.4e-51 204.9 269 55.4
Atru.chr5.2773 Acer truncatum HOM05D006779 ORTHO05D008491 2.2e-50 203.4 266 56.0
MSTRG.16763 Avicennia marina HOM05D006779 ORTHO05D008491 2.2e-50 203.4 271 51.7
Haze_01903 Corylus avellana HOM05D006779 ORTHO05D008491 2.2e-50 203.4 271 53.5
CiPaw.05G054000 Carya illinoinensis HOM05D006779 ORTHO05D008491 3.7e-50 202.6 267 53.9
TWI79G0004 Tripterygium wilfordii HOM05D006779 ORTHO05D008491 4.8e-50 202.2 264 55.7
Oeu064516.1 Olea europaea HOM05D006779 ORTHO05D008491 6.3e-50 201.8 260 51.2
Lalb_Chr09g0328181 Lupinus albus HOM05D006779 ORTHO05D008491 8.2e-50 201.4 271 54.6
SalBow6G0615 Salvia bowleyana HOM05D006779 ORTHO05D008491 8.2e-50 201.4 263 55.5
Thecc.02G097400 Theobroma cacao HOM05D006779 ORTHO05D008491 8.2e-50 201.4 267 55.8
Eucgr.I01169 Eucalyptus grandis HOM05D006779 ORTHO05D008491 1.1e-49 201.1 266 51.5
TWI31G0027 Tripterygium wilfordii HOM05D006779 ORTHO05D008491 1.4e-49 200.7 264 56.4
COL.COLO4_32686 Corchorus olitorius HOM05D006779 ORTHO05D008491 1.8e-49 200.3 267 56.9
vmacro02181 Vaccinium macrocarpon HOM05D006779 ORTHO05D008491 1.8e-49 200.3 296 45.6
Sc18g0004890 Simmondsia chinensis HOM05D006779 ORTHO05D008491 2.4e-49 199.9 266 54.5
PGR142G0644 Punica granatum HOM05D006779 ORTHO05D008491 4.1e-49 199.1 268 52.2
HPP92_004257 Vanilla planifolia HOM05D006779 ORTHO05D008491 4.1e-49 199.1 256 55.1
CARHR039640 Cardamine hirsuta HOM05D006779 ORTHO05D008491 5.3e-49 198.7 150 85.3
Glyma.01G146900 Glycine max HOM05D006779 ORTHO05D008491 5.3e-49 198.7 269 52.4
Glyma.10G112900 Glycine max HOM05D006779 ORTHO05D008491 5.3e-49 198.7 269 52.4
Ah.04g152710 Amaranthus hybridus HOM05D006779 ORTHO05D008491 6.9e-49 198.4 263 50.2
AUR62022456 Chenopodium quinoa HOM05D006779 ORTHO05D008491 6.9e-49 198.4 291 46.0
CSS0011815 Camellia sinensis var. sinensis HOM05D000591 ORTHO05D000579 9.1e-49 198.0 270 48.5
DCAR_029018 Daucus carota HOM05D000144 ORTHO05D003364 9.1e-49 198.0 261 55.9
Cc02_g18560 Coffea canephora HOM05D006779 ORTHO05D008491 1.5e-48 197.2 268 52.2
Dinv42131 Davidia involucrata HOM05D006779 ORTHO05D008491 1.5e-48 197.2 273 51.3
CANSAT25G0176 Cannabis sativa HOM05D006779 ORTHO05D008491 2.0e-48 196.8 266 56.4
Sopen01g050660 Solanum pennellii HOM05D006779 ORTHO05D008491 2.0e-48 196.8 267 50.6
Lj5C207T4 Lonicera japonica HOM05D006779 ORTHO05D008491 2.6e-48 196.4 259 55.6
Solyc01g108430.3 Solanum lycopersicum HOM05D006779 ORTHO05D008491 2.6e-48 196.4 267 50.6
Nitab4.5_0005583g0020 Nicotiana tabacum HOM05D006779 ORTHO05D008491 5.9e-48 195.3 267 53.9
PGSC0003DMG400025811 Solanum tuberosum HOM05D006779 ORTHO05D008491 5.9e-48 195.3 267 50.6
Nitab4.5_0004334g0110 Nicotiana tabacum HOM05D006779 ORTHO05D008491 1.3e-47 194.1 267 51.7
EL10Ac3g06870 Beta vulgaris HOM05D006779 ORTHO05D008491 1.7e-47 193.7 264 53.4
Glyma.02G159500 Glycine max HOM05D006779 ORTHO05D008491 2.2e-47 193.4 269 53.2
Rhsim11G0168500 Rhododendron simsii HOM05D006779 ORTHO05D008491 2.9e-47 193.0 292 44.2
MBI02_g21199_MAGBIO Magnolia biondii HOM05D006779 ORTHO05D008491 3.8e-47 192.6 275 53.8
Hund00325 Selenicereus undatus HOM05D006779 ORTHO05D008491 3.8e-47 192.6 266 54.9
Ca_18655_v3 Cicer arietinum L. HOM05D006779 ORTHO05D008491 5.0e-47 192.2 269 53.5
Ciclev10029963m.g Citrus clementina HOM05D006779 ORTHO05D008491 5.0e-47 192.2 270 50.4
unitig_60.g25783 Utricularia gibba HOM05D006779 ORTHO05D008491 5.0e-47 192.2 258 51.9
arahy.Tifrunner.gnm1.ann1.QJKD6Y Arachis hypogaea HOM05D006779 ORTHO05D008491 1.1e-46 191.0 273 50.2
arahy.Tifrunner.gnm1.ann1.T066AP Arachis hypogaea HOM05D006779 ORTHO05D008491 1.9e-46 190.3 271 48.3
SGA_v2.0_scaffold90G27693 Striga asiatica HOM05D006779 ORTHO05D008491 2.5e-46 189.9 264 45.1
Phvul.007G247000 Phaseolus vulgaris HOM05D006779 ORTHO05D008491 5.5e-46 188.7 269 46.1
Aqoxy6G01411 Aquilegia oxysepala HOM05D006779 ORTHO05D008491 7.2e-46 188.3 265 50.6
Lj4g0006122 Lotus japonicus HOM05D006779 ORTHO05D008491 1.6e-45 187.2 263 55.1
arahy.Tifrunner.gnm1.ann1.8ZG09Z Arachis hypogaea HOM05D006779 ORTHO05D008491 2.7e-45 186.4 275 48.4
CAN.G322.16 Capsicum annuum HOM05D006779 ORTHO05D008491 2.7e-45 186.4 265 53.2
SGA_v2.0_scaffold90G27688 Striga asiatica HOM05D006779 ORTHO05D008491 2.7e-45 186.4 264 44.7
ClCG02G005780 Citrullus lanatus HOM05D006779 ORTHO05D008491 7.9e-45 184.9 314 45.5
Psat7g121840 Pisum sativum HOM05D006779 ORTHO05D008491 8.8e-44 181.4 271 49.1
Medtr4g086640 Medicago truncatula HOM05D006779 ORTHO05D008491 7.4e-43 178.3 265 52.8
HanXRQChr10g0303251 Helianthus annuus HOM05D006779 ORTHO05D008491 2.2e-42 176.8 260 49.2
Peaxi162Scf00016g01637 Petunia axillaris HOM05D006779 ORTHO05D008491 4.8e-42 175.6 255 51.0
ECA234G4762 Erigeron canadensis HOM05D006779 ORTHO05D008491 3.5e-40 169.5 255 46.7
CDE06G1966 Ceratophyllum demersum HOM05D006779 ORTHO05D008491 1.0e-39 167.9 254 43.7
PSO541G4058 Papaver somniferum HOM05D006779 ORTHO05D008491 2.5e-38 163.3 260 48.1
Lsat_1_v5_gn_5_113321 Lactuca sativa HOM05D006779 ORTHO05D008491 3.0e-36 156.4 258 44.6
PSO675G5018 Papaver somniferum HOM05D006779 ORTHO05D008491 6.7e-36 155.2 260 47.3
SHI05379 Sapria himalayana HOM05D006779 ORTHO05D008491 1.1e-33 147.9 272 47.1
Zm00001eb373090 Zea mays HOM05D006779 ORTHO05D008491 1.4e-33 147.5 260 47.3
Mapoly0157s0003 Marchantia polymorpha HOM05D006779 ORTHO05D008491 1.1e-30 137.9 299 41.8
MELO3C018438.2 Cucumis melo HOM05D006779 ORTHO05D008491 4.2e-30 136.0 226 49.1
Cpa.g.sc62.36 Carica papaya HOM05D006779 ORTHO05D008491 2.3e-28 130.2 100 68.0
ATR0097G032 Amborella trichopoda HOM05D006779 ORTHO05D008491 6.8e-28 128.6 248 36.7
Pp3c14_26080 Physcomitrium patens HOM05D006779 ORTHO05D008491 1.7e-26 124.0 293 41.6
TAR628G0388 Trochodendron aralioides HOM05D006779 ORTHO05D008491 8.3e-26 121.7 104 61.5
AagrBONN_evm.TU.Sc2ySwM_344.4302 Anthoceros agrestis HOM05D006779 ORTHO05D008491 1.7e-23 114.0 291 38.8
SMO367G0139 Selaginella moellendorffii HOM05D006779 ORTHO05D008491 3.8e-23 112.8 270 39.3
HPP92_004235 Vanilla planifolia HOM05D006779 ORTHO05D008491 9.4e-22 108.2 210 49.0
FAN20G1913 Fragaria x ananassa HOM05D006779 ORTHO05D008491 3.6e-21 106.3 121 56.2
TPR.G23511 Trifolium pratense HOM05D006779 ORTHO05D008491 8.8e-20 101.7 70 67.1
CBR_g17671 Chara braunii HOM05D006779 ORTHO05D008491 9.8e-19 98.2 334 34.1
TPR.G23531 Trifolium pratense HOM05D006779 ORTHO05D008491 3.7e-18 96.3 119 52.9
AUR62042088 Chenopodium quinoa HOM05D006779 ORTHO05D008491 6.3e-18 95.5 208 47.6
Os06g0215200 Oryza sativa ssp. japonica HOM05D006779 ORTHO05D008491 6.3e-18 95.5 70 61.4
CDE03G0027 Ceratophyllum demersum HOM05D006779 ORTHO05D008491 1.0e-15 88.2 254 34.6
CSS0021002 Camellia sinensis var. sinensis HOM05D006779 ORTHO05D008491 7.2e-14 82.0 70 68.6
CSS0024784 Camellia sinensis var. sinensis HOM05D006779 ORTHO05D008491 1.2e-13 81.3 70 65.7
CSS0005405 Camellia sinensis var. sinensis HOM05D006779 ORTHO05D008491 5.9e-08 62.4 69 56.5
CSS0011003 Camellia sinensis var. sinensis HOM05D006779 ORTHO05D008491 5.9e-08 62.4 69 56.5
TAR628G1516 Trochodendron aralioides HOM05D006779 ORTHO05D008491 1.0e-07 61.6 120 41.7
Ah.08g219340 Amaranthus hybridus HOM05D006779 ORTHO05D008491 1.1e-06 58.2 93 46.2


User provided reference genes

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