Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G20380 Arabidopsis lyrata HOM05D007027 ORTHO05D008765 2.7e-233 811.6 404 100.0
AT1G09800 Arabidopsis thaliana HOM05D007027 ORTHO05D008765 2.0e-199 699.1 404 88.6
Carub.0001s0916 Capsella rubella HOM05D007027 ORTHO05D008765 9.7e-183 643.7 407 82.1
CARHR009790 Cardamine hirsuta HOM05D007027 ORTHO05D008765 4.5e-180 634.8 405 81.2
Thhalv10007981m.g Eutrema salsugineum HOM05D007027 ORTHO05D008765 2.0e-175 619.4 407 79.4
Sp1g08410 Schrenkiella parvula HOM05D007027 ORTHO05D008765 1.3e-171 606.7 409 77.5
BcaC05g24848 Brassica carinata HOM05D007027 ORTHO05D008765 9.2e-165 583.9 404 76.5
THA.LOC104816809 Tarenaya hassleriana HOM05D007027 ORTHO05D008765 2.3e-163 579.3 407 73.0
A06p06480 Brassica napus HOM05D007027 ORTHO05D008765 2.9e-158 562.4 397 74.1
BraA06t23859Z Brassica rapa HOM05D007027 ORTHO05D008765 2.9e-158 562.4 397 74.1
BolC5t29540H Brassica oleracea HOM05D007027 ORTHO05D008765 8.3e-158 560.8 399 73.9
C05p07890 Brassica napus HOM05D007027 ORTHO05D008765 1.7e-155 553.1 395 73.7
C08p49260 Brassica napus HOM05D007027 ORTHO05D008765 8.0e-153 544.3 355 78.6
BolC8t52461H Brassica oleracea HOM05D007027 ORTHO05D008765 1.8e-152 543.1 355 78.3
A09p65310 Brassica napus HOM05D007027 ORTHO05D008765 9.8e-151 537.3 355 77.7
BcaC07g41859 Brassica carinata HOM05D007027 ORTHO05D008765 1.3e-142 510.4 389 71.7
GSVIVG01023249001 Vitis vinifera HOM05D007027 ORTHO05D008765 1.8e-136 490.0 404 64.1
Cpa.g.sc113.45 Carica papaya HOM05D007027 ORTHO05D008765 4.4e-135 485.3 403 63.3
Gohir.D01G174800 Gossypium hirsutum HOM05D007027 ORTHO05D008765 4.1e-133 478.8 402 61.7
Gorai.002G216900 Gossypium raimondii HOM05D007027 ORTHO05D008765 7.1e-133 478.0 391 63.2
Cfa004487 Carpinus fangiana HOM05D007027 ORTHO05D008765 4.6e-132 475.3 411 61.8
CSS0028981 Camellia sinensis var. sinensis HOM05D007027 ORTHO05D008765 1.3e-131 473.8 407 61.4
Duzib132G0056 Durio zibethinus HOM05D007027 ORTHO05D008765 3.0e-131 472.6 406 60.6
TAR381G1092 Trochodendron aralioides HOM05D007027 ORTHO05D008765 8.6e-131 471.1 399 62.7
CiPaw.06G173600 Carya illinoinensis HOM05D007027 ORTHO05D008765 1.1e-130 470.7 410 61.7
Gohir.A01G183800 Gossypium hirsutum HOM05D007027 ORTHO05D008765 4.3e-130 468.8 391 62.4
Manes.07G024000 Manihot esculenta HOM05D007027 ORTHO05D008765 4.3e-130 468.8 409 60.4
MD15G1435400 Malus domestica HOM05D007027 ORTHO05D008765 2.1e-129 466.5 406 61.6
Glyma.12G167000 Glycine max HOM05D007027 ORTHO05D008765 1.1e-128 464.2 404 59.9
CiPaw.05G004800 Carya illinoinensis HOM05D007027 ORTHO05D008765 3.1e-128 462.6 407 60.9
SalBow7G1849 Salvia bowleyana HOM05D007027 ORTHO05D008765 9.0e-128 461.1 391 61.4
Ca_00043_v3 Cicer arietinum L. HOM05D007027 ORTHO05D008765 1.5e-127 460.3 389 61.7
Dinv07482 Davidia involucrata HOM05D007027 ORTHO05D008765 2.0e-127 459.9 364 65.1
MD08G1241400 Malus domestica HOM05D007027 ORTHO05D008765 3.4e-127 459.1 406 61.1
Glyma.16G003100 Glycine max HOM05D007027 ORTHO05D008765 4.4e-127 458.8 404 58.7
Nitab4.5_0000787g0210 Nicotiana tabacum HOM05D007027 ORTHO05D008765 9.9e-127 457.6 417 59.5
Nitab4.5_0004106g0030 Nicotiana tabacum HOM05D007027 ORTHO05D008765 9.9e-127 457.6 416 59.1
MBI03_g18680_MAGBIO Magnolia biondii HOM05D007027 ORTHO05D008765 1.3e-126 457.2 403 59.6
Nn5g27423 Nelumbo nucifera HOM05D007027 ORTHO05D008765 1.7e-126 456.8 394 60.7
Cc02_g23170 Coffea canephora HOM05D007027 ORTHO05D008765 6.4e-126 454.9 405 60.0
Atru.chr6.497 Acer truncatum HOM05D007027 ORTHO05D008765 8.4e-126 454.5 408 61.0
CANSAT54G3047 Cannabis sativa HOM05D007027 ORTHO05D008765 8.4e-126 454.5 412 58.0
FvH4_3g33250 Fragaria vesca HOM05D007027 ORTHO05D008765 8.4e-126 454.5 404 60.4
Solyc01g103560.3 Solanum lycopersicum HOM05D007027 ORTHO05D008765 1.1e-125 454.1 408 59.6
RcHm_v2.0_Chr5g0060601 Rosa chinensis HOM05D007027 ORTHO05D008765 1.4e-125 453.8 405 61.5
CAN.G855.3 Capsicum annuum HOM05D007027 ORTHO05D008765 5.4e-125 451.8 406 58.9
FAN16G3401 Fragaria x ananassa HOM05D007027 ORTHO05D008765 5.4e-125 451.8 405 59.3
Aqoxy3G00475 Aquilegia oxysepala HOM05D007027 ORTHO05D008765 2.1e-124 449.9 364 64.0
PGR142G1179 Punica granatum HOM05D007027 ORTHO05D008765 2.1e-124 449.9 388 62.1
QL02p100436 Quercus lobata HOM05D007027 ORTHO05D008765 2.1e-124 449.9 406 59.9
FAN25G1584 Fragaria x ananassa HOM05D007027 ORTHO05D008765 6.0e-124 448.4 404 59.2
Rhsim11G0122600 Rhododendron simsii HOM05D007027 ORTHO05D008765 1.3e-123 447.2 429 56.4
PGSC0003DMG400024892 Solanum tuberosum HOM05D007027 ORTHO05D008765 1.3e-123 447.2 407 58.2
Sopen01g045910 Solanum pennellii HOM05D007027 ORTHO05D008765 6.6e-123 444.9 408 58.6
Actinidia00176 Actinidia chinensis HOM05D007027 ORTHO05D008765 1.1e-122 444.1 376 61.2
Migut.B00775 Erythranthe guttata HOM05D007027 ORTHO05D008765 1.5e-122 443.7 410 59.3
HanXRQChr09g0249131 Helianthus annuus HOM05D007027 ORTHO05D008765 1.5e-122 443.7 363 64.7
Psat1g222360 Pisum sativum HOM05D007027 ORTHO05D008765 7.3e-122 441.4 390 60.0
TPR.G2122 Trifolium pratense HOM05D007027 ORTHO05D008765 1.3e-121 440.7 399 57.9
CsaV3_5G029790 Cucumis sativus L. HOM05D007027 ORTHO05D008765 2.1e-121 439.9 405 58.8
MELO3C011820.2 Cucumis melo HOM05D007027 ORTHO05D008765 2.8e-121 439.5 422 57.1
FAN11G0675 Fragaria x ananassa HOM05D007027 ORTHO05D008765 4.8e-121 438.7 440 55.7
Oeu064602.3 Olea europaea HOM05D007027 ORTHO05D008765 6.2e-121 438.3 451 55.0
Medtr2g005830 Medicago truncatula HOM05D007027 ORTHO05D008765 1.8e-120 436.8 403 57.3
Potri.003G008500 Populus trichocarpa HOM05D007027 ORTHO05D008765 6.9e-120 434.9 385 61.8
VMungo0540G1081 Vigna mungo HOM05D007027 ORTHO05D008765 6.9e-120 434.9 404 57.4
Lalb_Chr20g0123691 Lupinus albus HOM05D007027 ORTHO05D008765 2.0e-119 433.3 379 61.2
vmacro01711 Vaccinium macrocarpon HOM05D007027 ORTHO05D008765 9.9e-119 431.0 433 54.7
Lj5C266T4 Lonicera japonica HOM05D007027 ORTHO05D008765 1.3e-118 430.6 412 57.8
Os12g0194800 Oryza sativa ssp. japonica HOM05D007027 ORTHO05D008765 1.3e-118 430.6 367 59.7
COL.COLO4_17723 Corchorus olitorius HOM05D007027 ORTHO05D008765 2.2e-118 429.9 357 61.9
Thecc.02G018500 Theobroma cacao HOM05D007027 ORTHO05D008765 2.9e-118 429.5 403 58.3
EL10Ac6g14111 Beta vulgaris HOM05D007027 ORTHO05D008765 3.8e-118 429.1 357 62.7
SGA_v2.0_scaffold304G47919 Striga asiatica HOM05D007027 ORTHO05D008765 3.8e-118 429.1 402 58.2
Haze_10044 Corylus avellana HOM05D007027 ORTHO05D008765 1.1e-117 427.6 510 49.0
TWI23G0132 Tripterygium wilfordii HOM05D007027 ORTHO05D008765 4.2e-117 425.6 416 57.7
Hund15459 Selenicereus undatus HOM05D007027 ORTHO05D008765 2.1e-116 423.3 395 58.5
Prupe.1G579000 Prunus persica HOM05D007027 ORTHO05D008765 3.5e-116 422.5 405 59.3
DCAR_006671 Daucus carota HOM05D007027 ORTHO05D008765 1.8e-115 420.2 418 54.3
ECA233G3768 Erigeron canadensis HOM05D007027 ORTHO05D008765 3.0e-115 419.5 393 58.5
Sabra03G0004200 Salix brachista HOM05D007027 ORTHO05D008765 3.0e-115 419.5 418 56.0
PSO170G1275 Papaver somniferum HOM05D007027 ORTHO05D008765 1.6e-113 413.7 357 59.1
ATR1136G089 Amborella trichopoda HOM05D007027 ORTHO05D008765 3.7e-113 412.5 395 56.2
arahy.Tifrunner.gnm1.ann1.BAUB6M Arachis hypogaea HOM05D007027 ORTHO05D008765 4.8e-113 412.1 351 60.1
PSO017G0894 Papaver somniferum HOM05D007027 ORTHO05D008765 4.8e-113 412.1 357 59.1
arahy.Tifrunner.gnm1.ann1.3G44QY Arachis hypogaea HOM05D007027 ORTHO05D008765 8.1e-113 411.4 351 60.1
FAN21G1550 Fragaria x ananassa HOM05D007027 ORTHO05D008765 4.0e-112 409.1 404 55.4
unitig_699.g19848 Utricularia gibba HOM05D007027 ORTHO05D008765 1.5e-111 407.1 387 55.6
Zm00001eb138750 Zea mays HOM05D007027 ORTHO05D008765 2.6e-111 406.4 355 59.4
Ciclev10001491m.g Citrus clementina HOM05D007027 ORTHO05D008765 1.3e-110 404.1 370 59.5
Lj6g0019688 Lotus japonicus HOM05D007027 ORTHO05D008765 8.4e-110 401.4 389 54.5
Lj6g0023928 Lotus japonicus HOM05D007027 ORTHO05D008765 8.4e-110 401.4 389 54.5
Eucgr.I02764 Eucalyptus grandis HOM05D007027 ORTHO05D008765 7.6e-103 378.3 366 56.8
AUR62043952 Chenopodium quinoa HOM05D007027 ORTHO05D008765 2.1e-100 370.2 350 57.1
Pp3c1_13020 Physcomitrium patens HOM05D007027 ORTHO05D008765 9.7e-98 361.3 350 53.4
Sed0027668 Sechium edule HOM05D007027 ORTHO05D008765 5.9e-95 352.1 352 56.0
Aa31LG1G5150 Aethionema arabicum HOM05D007027 ORTHO05D008765 4.6e-92 342.4 221 77.4
Mapoly0016s0042 Marchantia polymorpha HOM05D007027 ORTHO05D008765 9.7e-90 334.7 396 48.7
SMO118G0354 Selaginella moellendorffii HOM05D007027 ORTHO05D008765 1.9e-85 320.5 349 50.1
Phvul.006G218900 Phaseolus vulgaris HOM05D007027 ORTHO05D008765 4.2e-85 319.3 289 57.8
ClCG11G013270 Citrullus lanatus HOM05D007027 ORTHO05D008765 5.1e-83 312.4 405 48.1
HPP92_013442 Vanilla planifolia HOM05D007027 ORTHO05D008765 5.3e-80 302.4 315 52.7
Sc07g0005100 Simmondsia chinensis HOM05D007027 ORTHO05D008765 1.2e-79 301.2 304 54.9
CBR_g30061 Chara braunii HOM05D007027 ORTHO05D008765 2.6e-74 283.5 454 39.4
HPP92_013441 Vanilla planifolia HOM05D007027 ORTHO05D008765 1.4e-72 277.7 180 71.1
CDE05G2927 Ceratophyllum demersum HOM05D007027 ORTHO05D008765 2.4e-64 250.4 190 68.4
Lsat_1_v5_gn_9_120240 Lactuca sativa HOM05D007027 ORTHO05D008765 3.5e-55 219.9 164 69.5
AUR62028254 Chenopodium quinoa HOM05D007027 ORTHO05D008765 1.1e-53 214.9 232 51.3
MCO02G420 Micromonas commoda HOM05D007027 ORTHO05D008765 2.4e-48 197.2 459 33.1
Migut.B00774 Erythranthe guttata HOM05D007027 ORTHO05D008765 4.7e-44 183.0 153 63.4
Peaxi162Scf00011g01224 Petunia axillaris HOM05D007027 ORTHO05D008765 1.8e-43 181.0 254 44.5
RcHm_v2.0_Chr3g0481081 Rosa chinensis HOM05D007027 ORTHO05D008765 3.2e-32 143.7 79 82.3
CDE05G0566 Ceratophyllum demersum HOM05D007027 ORTHO05D008765 1.9e-29 134.4 166 44.6
SMO361G0559 Selaginella moellendorffii HOM05D006708 ORTHO05D008321 8.4e-17 92.4 181 34.3
AagrBONN_evm.TU.Sc2ySwM_228.1603 Anthoceros agrestis HOM05D006708 ORTHO05D008321 1.6e-15 88.2 190 32.1
Cre09.g405150 Chlamydomonas reinhardtii HOM05D006708 ORTHO05D008321 3.0e-14 84.0 362 26.5
Pp3c21_5420 Physcomitrium patens HOM05D006708 ORTHO05D008321 8.7e-14 82.4 198 29.8
Mapoly0209s0002 Marchantia polymorpha HOM05D006708 ORTHO05D008321 1.9e-13 81.3 183 29.5
SEGI_30443 Sequoiadendron giganteum HOM05D007027 ORTHO05D008765 2.5e-13 80.9 52 73.1
Oeu022711.1 Olea europaea HOM05D006708 ORTHO05D008321 2.1e-12 77.8 190 27.9
Actinidia02537 Actinidia chinensis HOM05D006708 ORTHO05D008321 6.2e-12 76.3 174 28.7
Rhsim12G0000100 Rhododendron simsii HOM05D006708 ORTHO05D007921 8.1e-12 75.9 174 28.2
PGSC0003DMG400027203 Solanum tuberosum HOM05D006708 ORTHO05D008321 1.4e-11 75.1 172 31.4
Cc03_g00080 Coffea canephora HOM05D006708 ORTHO05D008321 2.4e-11 74.3 189 26.5
HanXRQChr10g0293331 Helianthus annuus HOM05D006708 ORTHO05D008321 4.0e-11 73.6 176 29.5
TPR.G12542 Trifolium pratense HOM05D006708 ORTHO05D008321 5.3e-11 73.2 181 28.7
arahy.Tifrunner.gnm1.ann1.H7T0W5 Arachis hypogaea HOM05D006708 ORTHO05D008321 6.9e-11 72.8 193 29.5
arahy.Tifrunner.gnm1.ann1.YU479Z Arachis hypogaea HOM05D006708 ORTHO05D008321 6.9e-11 72.8 186 28.5
Ciclev10005313m.g Citrus clementina HOM05D006708 ORTHO05D008321 9.0e-11 72.4 176 28.4
Lsat_1_v5_gn_1_39980 Lactuca sativa HOM05D006708 ORTHO05D008321 2.0e-10 71.2 181 29.8
MCO13G233 Micromonas commoda HOM05D006708 ORTHO05D008321 2.0e-10 71.2 361 24.9
Nitab4.5_0000745g0080 Nicotiana tabacum HOM05D006708 ORTHO05D008321 3.4e-10 70.5 172 29.7
Zm00001eb245280 Zea mays HOM05D006708 ORTHO05D008321 4.4e-10 70.1 198 28.3
Manes.03G212000 Manihot esculenta HOM05D006708 ORTHO05D008321 7.6e-10 69.3 181 27.6
ATR0796G062 Amborella trichopoda HOM05D006708 ORTHO05D008321 9.9e-10 68.9 176 29.0
TWI53G0094 Tripterygium wilfordii HOM05D006708 ORTHO05D008321 9.9e-10 68.9 179 30.7
CBR_g55386 Chara braunii HOM05D006708 ORTHO05D008321 1.4e-08 65.1 183 29.5
ECA233G5482 Erigeron canadensis HOM05D006708 ORTHO05D008321 2.3e-06 57.8 171 29.2
SEGI_32206 Sequoiadendron giganteum HOM05D006708 ORTHO05D008321 8.7e-06 55.8 74 39.2


User provided reference genes

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