Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL149U10010 Arabidopsis lyrata HOM05D002810 ORTHO05D012408 3.2e-23 110.9 57 100.0
AL5G22970 Arabidopsis lyrata HOM05D002810 ORTHO05D003983 3.2e-23 110.9 57 100.0
BcaB03g13853 Brassica carinata HOM05D002810 ORTHO05D003983 3.5e-22 107.5 56 96.4
BcaB07g32572 Brassica carinata HOM05D002810 ORTHO05D003983 3.5e-22 107.5 57 96.5
BcaC06g35470 Brassica carinata HOM05D002810 ORTHO05D003983 3.5e-22 107.5 56 96.4
C07p15700 Brassica napus HOM05D002810 ORTHO05D003983 3.5e-22 107.5 56 96.4
BolC7t42060H Brassica oleracea HOM05D002810 ORTHO05D003983 3.5e-22 107.5 56 96.4
CARHR029560 Cardamine hirsuta HOM05D002810 ORTHO05D003983 3.5e-22 107.5 57 94.7
BcaC05g26999 Brassica carinata HOM05D002810 ORTHO05D003983 7.9e-22 106.3 57 94.7
A07p10180 Brassica napus HOM05D002810 ORTHO05D003983 7.9e-22 106.3 56 94.6
C05p28620 Brassica napus HOM05D002810 ORTHO05D003983 7.9e-22 106.3 57 94.7
BolC5t31584H Brassica oleracea HOM05D002810 ORTHO05D003983 7.9e-22 106.3 57 94.7
BraA07t28811Z Brassica rapa HOM05D002810 ORTHO05D003983 7.9e-22 106.3 56 94.6
Carub.0001s2811 Capsella rubella HOM05D002810 ORTHO05D003983 7.9e-22 106.3 57 93.0
A09p36620 Brassica napus HOM05D002810 ORTHO05D003983 1.0e-21 105.9 57 94.7
BraA09t39182Z Brassica rapa HOM05D002810 ORTHO05D003983 1.0e-21 105.9 57 94.7
AL1G43730 Arabidopsis lyrata HOM05D002810 ORTHO05D003983 2.3e-21 104.8 57 93.0
AT1G29880 Arabidopsis thaliana HOM05D002810 ORTHO05D003983 3.0e-21 104.4 57 91.2
Sp1g25770 Schrenkiella parvula HOM05D002810 ORTHO05D003983 5.1e-21 103.6 57 89.5
Carub.0003s2844 Capsella rubella HOM05D002810 ORTHO05D003983 8.7e-21 102.8 56 89.3
Thhalv10006931m.g Eutrema salsugineum HOM05D002810 ORTHO05D003983 1.9e-20 101.7 56 89.3
Aa31LG1G22590 Aethionema arabicum HOM05D002810 ORTHO05D003983 5.7e-20 100.1 57 87.7
BcaB03g12184 Brassica carinata HOM05D002810 ORTHO05D012408 2.2e-19 98.2 57 87.7
THA.LOC104807285 Tarenaya hassleriana HOM05D002810 ORTHO05D003983 1.1e-18 95.9 57 86.0
Psat3g206520 Pisum sativum HOM05D002810 ORTHO05D003983 1.0e-16 89.4 57 75.4
CANSAT11G0290 Cannabis sativa HOM05D002810 ORTHO05D003983 3.8e-16 87.4 57 73.7
Ca_14018_v3 Cicer arietinum L. HOM05D002810 ORTHO05D003983 3.8e-16 87.4 57 71.9
TPR.G9721 Trifolium pratense HOM05D002810 ORTHO05D003983 1.1e-15 85.9 57 70.2
arahy.Tifrunner.gnm1.ann1.Z3WE7L Arachis hypogaea HOM05D002810 ORTHO05D003983 1.4e-15 85.5 57 73.7
Lj1g0018511 Lotus japonicus HOM05D002810 ORTHO05D003983 1.9e-15 85.1 57 70.2
FAN17G0004 Fragaria x ananassa HOM05D002810 ORTHO05D003983 2.5e-15 84.7 57 70.2
Glyma.08G363700 Glycine max HOM05D002810 ORTHO05D003983 2.5e-15 84.7 57 70.2
Potri.001G067800 Populus trichocarpa HOM05D002810 ORTHO05D003983 2.5e-15 84.7 57 70.2
Cfa017019 Carpinus fangiana HOM05D002810 ORTHO05D012408 3.2e-15 84.3 57 66.7
Cfa018257 Carpinus fangiana HOM05D002810 ORTHO05D003983 3.2e-15 84.3 57 66.7
Haze_21183 Corylus avellana HOM05D002810 ORTHO05D003983 3.2e-15 84.3 57 66.7
FvH4_4g22610 Fragaria vesca HOM05D002810 ORTHO05D003983 3.2e-15 84.3 57 70.2
Manes.08G101000 Manihot esculenta HOM05D002810 ORTHO05D003983 3.2e-15 84.3 57 68.4
Phvul.008G004200 Phaseolus vulgaris HOM05D002810 ORTHO05D003983 3.2e-15 84.3 57 70.2
Cfa009452 Carpinus fangiana HOM05D002810 ORTHO05D003983 4.2e-15 84.0 56 67.9
FAN07G1588 Fragaria x ananassa HOM05D002810 ORTHO05D003983 4.2e-15 84.0 57 68.4
FAN12G2350 Fragaria x ananassa HOM05D002810 ORTHO05D003983 5.5e-15 83.6 57 70.2
MD13G1131000 Malus domestica HOM05D002810 ORTHO05D003983 5.5e-15 83.6 57 70.2
MD16G1141200 Malus domestica HOM05D002810 ORTHO05D003983 5.5e-15 83.6 57 70.2
Medtr7g406850 Medicago truncatula HOM05D002810 ORTHO05D003983 5.5e-15 83.6 57 68.4
Prupe.1G214600 Prunus persica HOM05D002810 ORTHO05D003983 5.5e-15 83.6 57 70.2
RcHm_v2.0_Chr4g0428851 Rosa chinensis HOM05D002810 ORTHO05D003983 5.5e-15 83.6 57 70.2
TWI18G0448 Tripterygium wilfordii HOM05D002810 ORTHO05D003983 5.5e-15 83.6 57 68.4
TWI75G1068 Tripterygium wilfordii HOM05D002810 ORTHO05D003983 5.5e-15 83.6 57 70.2
Potri.003G162300 Populus trichocarpa HOM05D002810 ORTHO05D003983 7.2e-15 83.2 57 70.2
ClCG11G011160 Citrullus lanatus HOM05D002810 ORTHO05D003983 9.3e-15 82.8 57 68.4
MELO3C003905.2 Cucumis melo HOM05D002810 ORTHO05D003983 9.3e-15 82.8 57 66.7
CsaV3_2G009270 Cucumis sativus L. HOM05D002810 ORTHO05D003983 9.3e-15 82.8 57 66.7
Manes.09G188200 Manihot esculenta HOM05D002810 ORTHO05D003983 9.3e-15 82.8 57 66.7
Sabra01G0047100 Salix brachista HOM05D002810 ORTHO05D003983 1.2e-14 82.4 57 66.7
Sed0007290 Sechium edule HOM05D002810 ORTHO05D003983 1.6e-14 82.0 57 68.4
Ciclev10004524m.g Citrus clementina HOM05D002810 ORTHO05D003983 2.1e-14 81.6 55 65.5
Sabra03G0118000 Salix brachista HOM05D002810 ORTHO05D003983 2.1e-14 81.6 57 68.4
ClCG01G020940 Citrullus lanatus HOM05D002810 ORTHO05D003983 2.7e-14 81.3 57 66.7
Sed0005865 Sechium edule HOM05D002810 ORTHO05D003983 4.6e-14 80.5 57 64.9
Lalb_Chr04g0257341 Lupinus albus HOM05D002810 ORTHO05D012408 6.1e-14 80.1 57 68.4
QL08p055697 Quercus lobata HOM05D002810 ORTHO05D003983 6.1e-14 80.1 56 64.3
Haze_12505 Corylus avellana HOM05D002810 ORTHO05D003983 7.9e-14 79.7 57 66.7
Duzib248G0947 Durio zibethinus HOM05D002810 ORTHO05D003983 7.9e-14 79.7 57 68.4
Eucgr.G01975 Eucalyptus grandis HOM05D002810 ORTHO05D003983 1.4e-13 79.0 57 66.7
Lalb_Chr17g0335731 Lupinus albus HOM05D002810 ORTHO05D003983 1.8e-13 78.6 57 66.7
COL.COLO4_24379 Corchorus olitorius HOM05D002810 ORTHO05D003983 2.3e-13 78.2 57 63.2
PGR119G2030 Punica granatum HOM05D002810 ORTHO05D003983 2.3e-13 78.2 55 60.0
VMungo1383G1395 Vigna mungo HOM05D002810 ORTHO05D003983 2.3e-13 78.2 57 64.9
COL.COLO4_19490 Corchorus olitorius HOM05D002810 ORTHO05D003983 3.0e-13 77.8 57 63.2
SHI04113 Sapria himalayana HOM05D002810 ORTHO05D003983 3.9e-13 77.4 57 63.2
Atru.chr12.1423 Acer truncatum HOM05D002810 ORTHO05D003983 5.1e-13 77.0 50 66.0
Thecc.02G191900 Theobroma cacao HOM05D002810 ORTHO05D003983 6.7e-13 76.6 57 64.9
GSVIVG01008654001 Vitis vinifera HOM05D002810 ORTHO05D003983 1.1e-12 75.9 57 68.4
ECA233G3858 Erigeron canadensis HOM05D002810 ORTHO05D003983 1.5e-12 75.5 57 63.2
Gohir.D04G140800 Gossypium hirsutum HOM05D002810 ORTHO05D003983 1.5e-12 75.5 57 64.9
Gorai.012G125800 Gossypium raimondii HOM05D002810 ORTHO05D003983 1.5e-12 75.5 57 64.9
Gohir.A04G101600 Gossypium hirsutum HOM05D002810 ORTHO05D003983 4.3e-12 73.9 57 63.2
Lsat_1_v5_gn_8_125820 Lactuca sativa HOM05D002810 ORTHO05D003983 4.3e-12 73.9 57 61.4
Aqoxy1G00627 Aquilegia oxysepala HOM05D002810 ORTHO05D003983 9.7e-12 72.8 57 61.4
TAR371G0759 Trochodendron aralioides HOM05D002810 ORTHO05D003983 9.7e-12 72.8 57 64.9
TAR374G0126 Trochodendron aralioides HOM05D002810 ORTHO05D012408 1.3e-11 72.4 57 63.2
Carub.0007s0119 Capsella rubella HOM05D002810 ORTHO05D003983 2.2e-11 71.6 44 84.1
Nn4g22128 Nelumbo nucifera HOM05D002810 ORTHO05D003983 2.2e-11 71.6 57 63.2
Dinv05540 Davidia involucrata HOM05D002810 ORTHO05D003983 2.8e-11 71.2 57 61.4
Nn3g16268 Nelumbo nucifera HOM05D002810 ORTHO05D003983 2.8e-11 71.2 57 64.9
Cc11_g14990 Coffea canephora HOM05D002810 ORTHO05D003983 3.7e-11 70.9 56 58.9
Hma1.2p1_0787F.1_g217990 Hydrangea macrophylla HOM05D002810 ORTHO05D003983 4.8e-11 70.5 57 61.4
Lsat_1_v5_gn_8_125800 Lactuca sativa HOM05D002810 ORTHO05D012408 4.8e-11 70.5 56 58.9
ATR0807G207 Amborella trichopoda HOM05D002810 ORTHO05D003983 6.3e-11 70.1 57 59.6
AL1G43710 Arabidopsis lyrata HOM05D002810 ORTHO05D003983 6.3e-11 70.1 51 72.5
HanXRQChr17g0553691 Helianthus annuus HOM05D002810 ORTHO05D003983 6.3e-11 70.1 57 56.1
ATR0706G267 Amborella trichopoda HOM05D002810 ORTHO05D003983 8.2e-11 69.7 56 60.7
Rhsim12G0181000 Rhododendron simsii HOM05D002810 ORTHO05D003983 8.2e-11 69.7 57 63.2
DCAR_013876 Daucus carota HOM05D002810 ORTHO05D003983 1.1e-10 69.3 51 68.6
Hund10032 Selenicereus undatus HOM05D002810 ORTHO05D003983 1.1e-10 69.3 57 57.9
AL7G10960 Arabidopsis lyrata HOM05D002810 ORTHO05D003983 1.4e-10 68.9 44 81.8
vmacro16759 Vaccinium macrocarpon HOM05D002810 ORTHO05D003983 1.4e-10 68.9 57 61.4
CSS0026992 Camellia sinensis var. sinensis HOM05D002810 ORTHO05D003983 1.8e-10 68.6 57 61.4
SEGI_39194 Sequoiadendron giganteum HOM05D002810 ORTHO05D003983 1.8e-10 68.6 57 59.6
AUR62032217 Chenopodium quinoa HOM05D002810 ORTHO05D003983 2.4e-10 68.2 57 56.1
AUR62043309 Chenopodium quinoa HOM05D002810 ORTHO05D003983 2.4e-10 68.2 57 56.1
AUR62044211 Chenopodium quinoa HOM05D002810 ORTHO05D003983 2.4e-10 68.2 57 56.1
Ah.11g046940 Amaranthus hybridus HOM05D002810 ORTHO05D003983 3.1e-10 67.8 57 57.9
EL10Ac5g11280 Beta vulgaris HOM05D002810 ORTHO05D003983 3.1e-10 67.8 57 57.9
MBI10_g44968_MAGBIO Magnolia biondii HOM05D002810 ORTHO05D003983 3.1e-10 67.8 52 65.4
Peaxi162Scf00842g00331 Petunia axillaris HOM05D002810 ORTHO05D003983 5.3e-10 67.0 57 59.6
Hund02512 Selenicereus undatus HOM05D002810 ORTHO05D003983 5.3e-10 67.0 57 54.4
Zm00001eb084770 Zea mays HOM05D002810 ORTHO05D003983 5.3e-10 67.0 56 53.6
HPP92_000327 Vanilla planifolia HOM05D002810 ORTHO05D012408 6.9e-10 66.6 56 57.1
GSVIVG01001092001 Vitis vinifera HOM05D002810 ORTHO05D003983 6.9e-10 66.6 55 58.2
CAN.G849.7 Capsicum annuum HOM05D002810 ORTHO05D003983 9.1e-10 66.2 57 59.6
DCAR_025646 Daucus carota HOM05D002810 ORTHO05D003983 9.1e-10 66.2 51 66.7
Os04g0398300 Oryza sativa ssp. japonica HOM05D002810 ORTHO05D012408 9.1e-10 66.2 56 51.8
Nitab4.5_0007955g0020 Nicotiana tabacum HOM05D002810 ORTHO05D003983 1.2e-09 65.9 57 59.6
Hma1.2p1_0452F.1_g155970 Hydrangea macrophylla HOM05D002810 ORTHO05D003983 1.5e-09 65.5 57 54.4
TPR.G25541 Trifolium pratense HOM05D002810 ORTHO05D012408 1.5e-09 65.5 78 46.2
Actinidia25515 Actinidia chinensis HOM05D002810 ORTHO05D003983 2.0e-09 65.1 57 56.1
Actinidia36844 Actinidia chinensis HOM05D002810 ORTHO05D003983 2.0e-09 65.1 57 56.1
CSS0035484 Camellia sinensis var. sinensis HOM05D002810 ORTHO05D003983 2.0e-09 65.1 57 57.9
CSS0036034 Camellia sinensis var. sinensis HOM05D002810 ORTHO05D003983 2.0e-09 65.1 57 57.9
Dinv23230 Davidia involucrata HOM05D002810 ORTHO05D003983 2.0e-09 65.1 57 59.6
Medtr3g006730 Medicago truncatula HOM05D002810 ORTHO05D003983 2.6e-09 64.7 45 73.3
Sopen11g011720 Solanum pennellii HOM05D002810 ORTHO05D003983 2.6e-09 64.7 57 57.9
PGSC0003DMG400015909 Solanum tuberosum HOM05D002810 ORTHO05D003983 2.6e-09 64.7 57 57.9
vmacro19189 Vaccinium macrocarpon HOM05D002810 ORTHO05D003983 2.6e-09 64.7 57 54.4
Actinidia18296 Actinidia chinensis HOM05D002810 ORTHO05D003983 3.4e-09 64.3 57 56.1
Nitab4.5_0000691g0260 Nicotiana tabacum HOM05D002810 ORTHO05D003983 3.4e-09 64.3 57 57.9
Lj9A487T49 Lonicera japonica HOM05D002810 ORTHO05D003983 4.5e-09 63.9 51 64.7
PSO591G0171 Papaver somniferum HOM05D002810 ORTHO05D003983 4.5e-09 63.9 58 56.9
Solyc11g039830.2 Solanum lycopersicum HOM05D002810 ORTHO05D003983 4.5e-09 63.9 57 57.9
PSO832G1639 Papaver somniferum HOM05D002810 ORTHO05D003983 5.9e-09 63.5 58 56.9
Ah.02g114570 Amaranthus hybridus HOM05D002810 ORTHO05D003983 7.7e-09 63.2 57 50.9
SGA_v2.0_scaffold168G38551 Striga asiatica HOM05D002810 ORTHO05D003983 7.7e-09 63.2 51 58.8
Zm00001eb037050 Zea mays HOM05D002810 ORTHO05D003983 7.7e-09 63.2 56 55.4
Oeu054157.1 Olea europaea HOM05D002810 ORTHO05D003983 1.0e-08 62.8 51 58.8
Sc22g0003310 Simmondsia chinensis HOM05D002810 ORTHO05D003983 1.0e-08 62.8 51 56.9
FvH4_4g22450 Fragaria vesca HOM05D002810 ORTHO05D012408 1.3e-08 62.4 45 68.9
Cc04_g05830 Coffea canephora HOM05D002810 ORTHO05D003983 1.7e-08 62.0 51 56.9
Nitab4.5_0000976g0080 Nicotiana tabacum HOM05D002810 ORTHO05D003983 1.7e-08 62.0 51 58.8
Os08g0538000 Oryza sativa ssp. japonica HOM05D002810 ORTHO05D003983 1.7e-08 62.0 56 53.6
Peaxi162Scf00314g00629 Petunia axillaris HOM05D002810 ORTHO05D003983 1.7e-08 62.0 51 56.9
Rhsim08G0198100 Rhododendron simsii HOM05D002810 ORTHO05D003983 1.7e-08 62.0 57 50.9
RcHm_v2.0_Chr1g0361881 Rosa chinensis HOM05D002810 ORTHO05D003983 1.7e-08 62.0 45 66.7
Solyc03g118170.3 Solanum lycopersicum HOM05D002810 ORTHO05D003983 1.7e-08 62.0 51 58.8
Sopen03g037090 Solanum pennellii HOM05D002810 ORTHO05D003983 1.7e-08 62.0 51 58.8
PGSC0003DMG400014239 Solanum tuberosum HOM05D002810 ORTHO05D003983 1.7e-08 62.0 51 58.8
CAN.G843.8 Capsicum annuum HOM05D002810 ORTHO05D003983 2.2e-08 61.6 51 58.8
COL.COLO4_37263 Corchorus olitorius HOM05D002810 ORTHO05D003983 2.2e-08 61.6 56 58.9
Migut.I00670 Erythranthe guttata HOM05D002810 ORTHO05D003983 2.2e-08 61.6 51 60.8
Nitab4.5_0011600g0010 Nicotiana tabacum HOM05D002810 ORTHO05D003983 2.2e-08 61.6 51 58.8
Zm00001eb198180 Zea mays HOM05D002810 ORTHO05D003983 2.2e-08 61.6 49 61.2
FAN14G3732 Fragaria x ananassa HOM05D002810 ORTHO05D012408 5.0e-08 60.5 48 58.3
Oeu043187.1 Olea europaea HOM05D002810 ORTHO05D003983 5.0e-08 60.5 51 56.9
Oeu043188.1 Olea europaea HOM05D002810 ORTHO05D012408 5.0e-08 60.5 51 56.9
SGA_v2.0_scaffold37G14676 Striga asiatica HOM05D002810 ORTHO05D003983 5.0e-08 60.5 51 58.8
SGA_v2.0_scaffold5G02803 Striga asiatica HOM05D002810 ORTHO05D003983 6.5e-08 60.1 51 56.9
Thecc.03G141100 Theobroma cacao HOM05D002810 ORTHO05D003983 6.5e-08 60.1 57 57.9
Migut.D01180 Erythranthe guttata HOM05D002810 ORTHO05D003983 1.1e-07 59.3 51 54.9
Duzib132G0251 Durio zibethinus HOM05D002810 ORTHO05D186195 1.9e-07 58.5 47 61.7
ECA233G1476 Erigeron canadensis HOM05D002810 ORTHO05D003983 1.9e-07 58.5 47 55.3
SalBow1G2675 Salvia bowleyana HOM05D002810 ORTHO05D003983 7.2e-07 56.6 50 54.0
SMO356G0375 Selaginella moellendorffii HOM05D002810 ORTHO05D003983 7.2e-07 56.6 56 42.9
unitig_736.g22830 Utricularia gibba HOM05D002810 ORTHO05D003983 7.2e-07 56.6 49 53.1
MSTRG.9374 Avicennia marina HOM05D002810 ORTHO05D003983 9.4e-07 56.2 51 52.9
Duzib068G0223 Durio zibethinus HOM05D002810 ORTHO05D003983 9.4e-07 56.2 42 66.7
Medtr3g006740 Medicago truncatula HOM05D002810 ORTHO05D003983 9.4e-07 56.2 42 64.3
unitig_899.g14822 Utricularia gibba HOM05D002810 ORTHO05D003983 1.2e-06 55.8 50 56.0
MD13G1145800 Malus domestica HOM05D002810 ORTHO05D003983 6.1e-06 53.5 42 66.7


User provided reference genes

Program Settings