Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A07p40900 Brassica napus HOM05D007201 ORTHO05D009122 1.9e-186 656.0 400 100.0
BraA07t31630Z Brassica rapa HOM05D007201 ORTHO05D009122 3.4e-180 635.2 411 89.3
C06p49330 Brassica napus HOM05D007201 ORTHO05D009122 4.3e-175 618.2 403 92.6
BcaC08g47362 Brassica carinata HOM05D007201 ORTHO05D009122 6.9e-165 584.3 404 87.4
BolC6t39968H Brassica oleracea HOM05D007201 ORTHO05D009122 6.7e-160 567.8 437 76.0
Sp5g30480 Schrenkiella parvula HOM05D007201 ORTHO05D009122 7.3e-122 441.4 443 65.5
Carub.0002s2218 Capsella rubella HOM05D007201 ORTHO05D009122 7.8e-116 421.4 416 60.6
AL2G35270 Arabidopsis lyrata HOM05D007201 ORTHO05D009122 6.2e-113 411.8 461 54.7
Thhalv10018711m.g Eutrema salsugineum HOM05D007201 ORTHO05D009122 1.3e-110 404.1 407 63.4
AT1G75340 Arabidopsis thaliana HOM05D007201 ORTHO05D009122 6.2e-105 385.2 453 58.5
CARHR068690 Cardamine hirsuta HOM05D007201 ORTHO05D009122 2.3e-91 340.1 439 55.6
Aa31LG4G5550 Aethionema arabicum HOM05D007201 ORTHO05D009122 1.0e-75 288.1 437 45.1
THA.LOC104809224 Tarenaya hassleriana HOM05D007201 ORTHO05D009122 2.8e-73 280.0 428 50.5
Gorai.012G009900 Gossypium raimondii HOM05D007201 ORTHO05D009122 3.0e-59 233.4 439 44.0
PSO339G5324 Papaver somniferum HOM05D007201 ORTHO05D009122 5.1e-59 232.6 434 39.9
Gohir.D04G008200 Gossypium hirsutum HOM05D007201 ORTHO05D009122 6.7e-59 232.3 421 40.6
QL11p005700 Quercus lobata HOM05D007201 ORTHO05D009122 6.3e-57 225.7 425 37.9
Thecc.09G202300 Theobroma cacao HOM05D007201 ORTHO05D009122 2.4e-56 223.8 426 38.3
Cfa012872 Carpinus fangiana HOM05D007201 ORTHO05D009122 9.0e-56 221.9 438 39.3
COL.COLO4_09000 Corchorus olitorius HOM05D007201 ORTHO05D009122 2.0e-55 220.7 428 40.2
Manes.02G222200 Manihot esculenta HOM05D007201 ORTHO05D009122 5.9e-55 219.2 420 41.7
Eucgr.C00055 Eucalyptus grandis HOM05D007201 ORTHO05D009122 5.5e-53 212.6 423 39.2
TAR626G0209 Trochodendron aralioides HOM05D007201 ORTHO05D009122 5.5e-53 212.6 434 34.6
CSS0027843 Camellia sinensis var. sinensis HOM05D007201 ORTHO05D009122 1.2e-52 211.5 425 39.5
CiPaw.15G000100 Carya illinoinensis HOM05D007201 ORTHO05D009122 1.2e-52 211.5 434 36.9
PGR142G4385 Punica granatum HOM05D007201 ORTHO05D009122 1.2e-52 211.5 403 41.9
Ciclev10008517m.g Citrus clementina HOM05D007201 ORTHO05D009122 2.7e-52 210.3 412 36.4
Haze_21242 Corylus avellana HOM05D007201 ORTHO05D009122 3.6e-52 209.9 452 37.6
MELO3C010035.2 Cucumis melo HOM05D007201 ORTHO05D009122 4.6e-52 209.5 423 35.2
ECA234G1264 Erigeron canadensis HOM05D007201 ORTHO05D009122 7.9e-52 208.8 407 40.5
Phvul.011G018600 Phaseolus vulgaris HOM05D007201 ORTHO05D009122 1.8e-51 207.6 424 36.6
Atru.chr7.298 Acer truncatum HOM05D007201 ORTHO05D009122 3.0e-51 206.8 411 37.2
CsaV3_1G044360 Cucumis sativus L. HOM05D007201 ORTHO05D009122 3.9e-51 206.5 418 36.1
Glyma.11G109000 Glycine max HOM05D007201 ORTHO05D009122 3.3e-50 203.4 426 34.0
arahy.Tifrunner.gnm1.ann1.G7GJBK Arachis hypogaea HOM05D007201 ORTHO05D009122 4.4e-50 203.0 431 44.1
Rhsim03G0269700 Rhododendron simsii HOM05D007201 ORTHO05D009122 7.4e-50 202.2 419 37.7
Sc10g0006090 Simmondsia chinensis HOM05D007201 ORTHO05D009122 9.7e-50 201.8 420 36.0
arahy.Tifrunner.gnm1.ann1.X4HTYC Arachis hypogaea HOM05D007201 ORTHO05D009122 1.3e-49 201.4 434 42.6
Glyma.12G016400 Glycine max HOM05D007201 ORTHO05D009122 1.3e-49 201.4 432 36.1
SHI24431 Sapria himalayana HOM05D007201 ORTHO05D009122 1.3e-49 201.4 245 46.5
DCAR_019970 Daucus carota HOM05D002293 ORTHO05D005475 1.7e-49 201.1 415 36.9
Potri.006G081100 Populus trichocarpa HOM05D007201 ORTHO05D009122 4.8e-49 199.5 466 38.6
ECA240G0013 Erigeron canadensis HOM05D006383 ORTHO05D007815 1.1e-48 198.4 422 38.4
TPR.G28027 Trifolium pratense HOM05D007201 ORTHO05D009122 1.1e-48 198.4 425 42.8
PGSC0003DMG400002893 Solanum tuberosum HOM05D007201 ORTHO05D009122 6.9e-48 195.7 438 47.0
Lju50A20G7 Lonicera japonica HOM05D007201 ORTHO05D009122 9.1e-48 195.3 417 39.8
Lj3g0009807 Lotus japonicus HOM05D007201 ORTHO05D009122 1.2e-47 194.9 419 36.0
HanXRQChr10g0309261 Helianthus annuus HOM05D007201 ORTHO05D009122 1.5e-47 194.5 240 50.4
Nn8g41282 Nelumbo nucifera HOM05D007201 ORTHO05D009122 2.0e-47 194.1 417 37.6
Medtr4g078160 Medicago truncatula HOM05D007201 ORTHO05D009122 1.0e-46 191.8 426 39.0
RcHm_v2.0_Chr4g0384751 Rosa chinensis HOM05D007201 ORTHO05D009122 1.3e-46 191.4 425 33.4
Sabra06G0061200 Salix brachista HOM05D007201 ORTHO05D009122 2.2e-46 190.7 476 34.2
Lalb_Chr19g0140031 Lupinus albus HOM05D007201 ORTHO05D009122 3.8e-46 189.9 400 39.8
VMungo1127G0228 Vigna mungo HOM05D007201 ORTHO05D009122 5.0e-46 189.5 437 34.8
FvH4_4g00131 Fragaria vesca HOM05D007201 ORTHO05D009122 8.5e-46 188.7 418 34.7
Psat7g169960 Pisum sativum HOM05D007201 ORTHO05D009122 1.4e-45 188.0 432 36.8
HPP92_017373 Vanilla planifolia HOM05D007201 ORTHO05D009122 1.9e-45 187.6 237 50.6
FAN12G0236 Fragaria x ananassa HOM05D007201 ORTHO05D009122 2.5e-45 187.2 411 35.0
MD04G1000600 Malus domestica HOM05D007201 ORTHO05D009122 4.2e-45 186.4 446 34.8
CANSAT25G2467 Cannabis sativa HOM05D007201 ORTHO05D009122 9.4e-45 185.3 215 45.6
Hund22525 Selenicereus undatus HOM05D007201 ORTHO05D009122 9.4e-45 185.3 427 36.1
Cc06_g23490 Coffea canephora HOM05D007201 ORTHO05D009122 1.2e-44 184.9 447 33.8
Aqoxy7G02518 Aquilegia oxysepala HOM05D007201 ORTHO05D009122 1.6e-44 184.5 449 34.3
Solyc12g009390.2 Solanum lycopersicum HOM05D007201 ORTHO05D009122 2.1e-44 184.1 431 48.3
Actinidia03796 Actinidia chinensis HOM05D007201 ORTHO05D009122 2.7e-44 183.7 437 37.3
GSVIVG01034266001 Vitis vinifera HOM05D007201 ORTHO05D009122 6.7e-43 179.1 406 42.4
Cpa.g.sc46.114 Carica papaya HOM05D007201 ORTHO05D009122 1.1e-42 178.3 448 33.9
Prupe.1G000600 Prunus persica HOM05D007201 ORTHO05D009122 2.6e-42 177.2 433 33.7
Aqoxy37s001 Aquilegia oxysepala HOM05D007201 ORTHO05D009122 1.7e-41 174.5 242 44.2
SEGI_05170 Sequoiadendron giganteum HOM05D007201 ORTHO05D009122 1.7e-41 174.5 214 45.3
Lsat_1_v5_gn_5_80700 Lactuca sativa HOM05D007201 ORTHO05D009122 2.8e-41 173.7 418 34.0
Sopen12g004380 Solanum pennellii HOM05D007201 ORTHO05D009122 3.7e-41 173.3 422 48.3
SGA_v2.0_scaffold21G09583 Striga asiatica HOM05D007201 ORTHO05D009122 1.1e-40 171.8 483 34.6
unitig_8.g3542 Utricularia gibba HOM05D007201 ORTHO05D009122 7.0e-40 169.1 406 34.0
CAN.G1591.3 Capsicum annuum HOM05D007201 ORTHO05D009122 2.0e-39 167.5 208 48.1
Nitab4.5_0000073g0490 Nicotiana tabacum HOM05D007201 ORTHO05D009122 2.6e-39 167.2 201 48.3
FAN12G1512 Fragaria x ananassa HOM05D007201 ORTHO05D009122 1.3e-38 164.9 190 45.8
CSS0037159 Camellia sinensis var. sinensis HOM05D007201 ORTHO05D009122 2.5e-37 160.6 336 35.4
EL10Ac2g03602 Beta vulgaris HOM05D007201 ORTHO05D009122 4.2e-37 159.8 467 35.8
AUR62027959 Chenopodium quinoa HOM05D007201 ORTHO05D009122 9.4e-37 158.7 230 45.2
CDE04G0352 Ceratophyllum demersum HOM05D007201 ORTHO05D009122 2.7e-36 157.1 372 34.1
vmacro22702 Vaccinium macrocarpon HOM05D007201 ORTHO05D009122 2.7e-36 157.1 508 29.9
ATR0626G320 Amborella trichopoda HOM05D007201 ORTHO05D009122 4.7e-36 156.4 419 33.4
Os06g0704300 Oryza sativa ssp. japonica HOM05D007201 ORTHO05D009122 4.7e-36 156.4 432 34.5
Zm00001eb227240 Zea mays HOM05D007201 ORTHO05D009122 6.1e-36 156.0 429 33.3
CSS0027553 Camellia sinensis var. sinensis HOM05D007201 ORTHO05D009122 5.2e-35 152.9 146 56.8
Peaxi162Scf00047g02450 Petunia axillaris HOM05D007201 ORTHO05D009122 6.7e-35 152.5 411 37.2
Pp3c7_12210 Physcomitrium patens HOM05D007201 ORTHO05D009122 3.1e-32 143.7 452 30.5
Nitab4.5_0004827g0030 Nicotiana tabacum HOM05D007201 ORTHO05D009122 3.2e-29 133.7 344 36.9
Duzib168G1263 Durio zibethinus HOM05D007201 ORTHO05D009122 9.4e-29 132.1 415 36.1
Mapoly0005s0044 Marchantia polymorpha HOM05D007201 ORTHO05D009122 4.4e-26 123.2 450 27.6
Dinv26498 Davidia involucrata HOM05D007201 ORTHO05D009122 1.1e-24 118.6 422 31.3
FAN22G0406 Fragaria x ananassa HOM05D007201 ORTHO05D009122 1.4e-24 118.2 422 29.9
FAN17G0247 Fragaria x ananassa HOM05D007201 ORTHO05D009122 2.4e-24 117.5 89 56.2
AagrBONN_evm.TU.Sc2ySwM_117.2509 Anthoceros agrestis HOM05D007201 ORTHO05D009122 3.2e-21 107.1 99 49.5
Migut.L01609 Erythranthe guttata HOM05D007201 ORTHO05D009122 1.3e-17 95.1 408 30.9
CBR_g15955 Chara braunii HOM05D007201 ORTHO05D009122 4.9e-17 93.2 235 35.3
Oeu000954.1 Olea europaea HOM05D007201 ORTHO05D009122 8.3e-17 92.4 284 28.9
Gohir.A05G407400 Gossypium hirsutum HOM05D007201 ORTHO05D009122 8.0e-12 75.9 307 33.2
CSS0006520 Camellia sinensis var. sinensis HOM05D007201 ORTHO05D009122 6.4e-09 66.2 58 51.7
CSS0048863 Camellia sinensis var. sinensis HOM05D007201 ORTHO05D009122 6.4e-09 66.2 58 51.7
ClCG03G010480 Citrullus lanatus HOM05D007201 ORTHO05D009122 2.3e-06 57.8 33 78.8
arahy.Tifrunner.gnm1.ann1.IV261E Arachis hypogaea HOM05D000013 ORTHO05D000506 6.6e-06 56.2 84 39.3
CSS0038290 Camellia sinensis var. sinensis HOM05D007201 ORTHO05D009122 8.6e-06 55.8 42 61.9


User provided reference genes

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