Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A07p20710 Brassica napus HOM05D004635 ORTHO05D005899 0.0e+00 1119.8 576 100.0
BraA07t29762Z Brassica rapa HOM05D004635 ORTHO05D005899 2.7e-303 1044.6 576 94.8
Sp7g00720 Schrenkiella parvula HOM05D004635 ORTHO05D005899 4.8e-276 954.1 597 84.4
SpUn0010_0200 Schrenkiella parvula HOM05D004635 ORTHO05D005899 4.8e-276 954.1 597 84.4
BcaB06g27604 Brassica carinata HOM05D004635 ORTHO05D005899 2.9e-273 944.9 588 84.9
C04p48290 Brassica napus HOM05D004635 ORTHO05D005899 2.1e-271 938.7 589 84.9
BcaC02g08976 Brassica carinata HOM05D004635 ORTHO05D005899 4.7e-271 937.6 589 84.9
BolC4t26422H Brassica oleracea HOM05D004635 ORTHO05D005899 4.7e-271 937.6 589 84.9
BraA04t17085Z Brassica rapa HOM05D004635 ORTHO05D005899 8.2e-268 926.8 589 84.7
A04p14360 Brassica napus HOM05D004635 ORTHO05D005899 3.1e-267 924.9 589 84.6
BcaB02g07904 Brassica carinata HOM05D004635 ORTHO05D005899 3.8e-265 917.9 585 85.3
Carub.0007s3429 Capsella rubella HOM05D004635 ORTHO05D005899 6.3e-260 900.6 612 78.9
AL7G48240 Arabidopsis lyrata HOM05D004635 ORTHO05D005899 1.4e-259 899.4 614 77.5
Thhalv10027696m.g Eutrema salsugineum HOM05D004635 ORTHO05D005899 1.7e-257 892.5 600 80.0
AT5G41190 Arabidopsis thaliana HOM05D004635 ORTHO05D005899 1.5e-256 889.4 608 77.8
BcaC08g44516 Brassica carinata HOM05D004635 ORTHO05D005899 3.0e-246 855.1 585 80.0
Aa31LG9G660 Aethionema arabicum HOM05D004635 ORTHO05D005899 3.1e-235 818.5 606 71.3
THA.LOC104818064 Tarenaya hassleriana HOM05D004635 ORTHO05D005899 1.1e-216 756.9 609 68.0
CARHR213190 Cardamine hirsuta HOM05D004635 ORTHO05D005899 1.1e-211 740.3 580 67.6
COL.COLO4_34438 Corchorus olitorius HOM05D004635 ORTHO05D005899 3.1e-198 695.7 616 62.3
Atru.chr9.2220 Acer truncatum HOM05D004635 ORTHO05D005899 4.6e-194 681.8 637 59.5
Thecc.03G276500 Theobroma cacao HOM05D004635 ORTHO05D005899 1.3e-191 673.7 604 61.6
Duzib084G1397 Durio zibethinus HOM05D004635 ORTHO05D005899 1.2e-189 667.2 623 59.7
Ciclev10019281m.g Citrus clementina HOM05D004635 ORTHO05D005899 1.5e-189 666.8 638 59.1
Eucgr.E00572 Eucalyptus grandis HOM05D004635 ORTHO05D005899 1.7e-188 663.3 620 58.7
PGR042G2640 Punica granatum HOM05D004635 ORTHO05D005899 4.2e-187 658.7 611 58.8
CsaV3_5G002950 Cucumis sativus L. HOM05D004635 ORTHO05D005899 7.1e-187 657.9 615 57.9
Manes.01G063000 Manihot esculenta HOM05D004635 ORTHO05D005899 7.1e-187 657.9 630 58.3
MELO3C005661.2 Cucumis melo HOM05D004635 ORTHO05D005899 1.6e-186 656.8 618 58.7
RcHm_v2.0_Chr7g0211871 Rosa chinensis HOM05D004635 ORTHO05D005899 1.0e-185 654.1 624 58.2
CANSAT78G0227 Cannabis sativa HOM05D004635 ORTHO05D005899 3.9e-185 652.1 573 61.6
Thhalv10009994m.g Eutrema salsugineum HOM05D004635 ORTHO05D005899 5.1e-185 651.7 593 62.6
FAN18G0535 Fragaria x ananassa HOM05D004635 ORTHO05D005899 1.6e-183 646.7 618 58.3
FvH4_5g23090 Fragaria vesca HOM05D004635 ORTHO05D005899 1.1e-182 644.0 618 58.4
C06p19650 Brassica napus HOM05D004635 ORTHO05D005899 2.4e-182 642.9 387 88.1
Gohir.A09G192700 Gossypium hirsutum HOM05D004635 ORTHO05D005899 3.1e-182 642.5 614 58.1
ClCG01G002860 Citrullus lanatus HOM05D004635 ORTHO05D005899 4.0e-182 642.1 620 56.8
QL01p003129 Quercus lobata HOM05D004635 ORTHO05D005899 4.0e-182 642.1 622 58.5
FAN18G1690 Fragaria x ananassa HOM05D004635 ORTHO05D005899 5.3e-182 641.7 618 57.9
Cpa.g.sc202.13 Carica papaya HOM05D004635 ORTHO05D005899 1.2e-181 640.6 622 57.9
Gorai.006G209700 Gossypium raimondii HOM05D004635 ORTHO05D005899 1.2e-181 640.6 617 57.5
Gohir.D09G186900 Gossypium hirsutum HOM05D004635 ORTHO05D005899 2.0e-181 639.8 616 58.1
FAN04G0694 Fragaria x ananassa HOM05D004635 ORTHO05D005899 2.6e-181 639.4 618 57.8
MD14G1101800 Malus domestica HOM05D004635 ORTHO05D005899 1.7e-180 636.7 619 57.0
FAN13G3179 Fragaria x ananassa HOM05D004635 ORTHO05D005899 2.2e-180 636.3 618 57.4
Lj6A677T80 Lonicera japonica HOM05D004635 ORTHO05D005899 2.2e-180 636.3 631 55.8
TWI81G1014 Tripterygium wilfordii HOM05D004635 ORTHO05D005899 2.9e-180 636.0 620 58.2
Haze_08871 Corylus avellana HOM05D004635 ORTHO05D005899 2.1e-178 629.8 602 58.3
Lsat_1_v5_gn_6_87181 Lactuca sativa HOM05D004635 ORTHO05D005899 2.7e-178 629.4 584 57.7
Peaxi162Scf00102g01512 Petunia axillaris HOM05D004635 ORTHO05D005899 6.0e-178 628.2 611 56.8
HanXRQChr13g0416481 Helianthus annuus HOM05D004635 ORTHO05D005899 1.8e-177 626.7 588 59.0
PSO017G3139 Papaver somniferum HOM05D004635 ORTHO05D005899 2.3e-177 626.3 601 57.2
Hma1.2p1_0377F.1_g139240 Hydrangea macrophylla HOM05D004635 ORTHO05D005899 6.7e-177 624.8 603 57.4
Prupe.5G097400 Prunus persica HOM05D004635 ORTHO05D005899 1.1e-176 624.0 626 56.9
Actinidia02016 Actinidia chinensis HOM05D004635 ORTHO05D005899 2.5e-176 622.9 631 55.6
Cfa012156 Carpinus fangiana HOM05D004635 ORTHO05D005899 2.5e-176 622.9 605 58.2
PSO384G0809 Papaver somniferum HOM05D004635 ORTHO05D005899 2.5e-176 622.9 600 57.3
Dinv38955 Davidia involucrata HOM05D004635 ORTHO05D005899 5.6e-176 621.7 636 55.2
Potri.003G124700 Populus trichocarpa HOM05D004635 ORTHO05D005899 5.6e-176 621.7 624 55.9
PSO170G0760 Papaver somniferum HOM05D004635 ORTHO05D005899 9.6e-176 620.9 601 56.7
Sabra03G0088200 Salix brachista HOM05D004635 ORTHO05D005899 1.6e-175 620.2 625 56.3
Medtr8g098490 Medicago truncatula HOM05D004635 ORTHO05D005899 2.1e-175 619.8 617 55.9
PSO339G4625 Papaver somniferum HOM05D004635 ORTHO05D005899 1.4e-174 617.1 599 57.3
Aqoxy5G04278 Aquilegia oxysepala HOM05D004635 ORTHO05D005899 3.1e-174 615.9 614 56.2
ECA240G4094 Erigeron canadensis HOM05D004635 ORTHO05D005899 1.5e-173 613.6 595 57.1
arahy.Tifrunner.gnm1.ann1.BGY2GF Arachis hypogaea HOM05D004635 ORTHO05D005899 7.6e-173 611.3 605 56.4
Cc08_g14490 Coffea canephora HOM05D004635 ORTHO05D005899 3.8e-172 609.0 634 54.1
DCAR_000603 Daucus carota HOM05D004635 ORTHO05D005899 3.8e-172 609.0 621 56.2
Lj4g0017456 Lotus japonicus HOM05D004635 ORTHO05D005899 3.8e-172 609.0 598 55.5
arahy.Tifrunner.gnm1.ann1.NB74KP Arachis hypogaea HOM05D004635 ORTHO05D005899 2.5e-171 606.3 613 55.1
PGSC0003DMG400029793 Solanum tuberosum HOM05D004635 ORTHO05D005899 4.2e-171 605.5 595 56.6
GSVIVG01019776001 Vitis vinifera HOM05D004635 ORTHO05D005899 4.2e-171 605.5 580 57.8
arahy.Tifrunner.gnm1.ann1.Y4HLQF Arachis hypogaea HOM05D004635 ORTHO05D005899 9.3e-171 604.4 608 55.4
Nitab4.5_0003907g0020 Nicotiana tabacum HOM05D004635 ORTHO05D005899 9.3e-171 604.4 596 56.2
arahy.Tifrunner.gnm1.ann1.MF5MQE Arachis hypogaea HOM05D004635 ORTHO05D005899 1.2e-170 604.0 597 56.6
Lalb_Chr05g0224871 Lupinus albus HOM05D004635 ORTHO05D005899 1.2e-170 604.0 618 54.9
CAN.G792.84 Capsicum annuum HOM05D004635 ORTHO05D005899 2.7e-170 602.8 596 56.7
vmacro11312 Vaccinium macrocarpon HOM05D004635 ORTHO05D005899 1.0e-169 600.9 609 57.5
Psat7g034520 Pisum sativum HOM05D004635 ORTHO05D005899 1.8e-169 600.1 581 57.5
Ca_17544_v3 Cicer arietinum L. HOM05D004635 ORTHO05D005899 3.0e-169 599.4 630 55.4
Nitab4.5_0004836g0050 Nicotiana tabacum HOM05D004635 ORTHO05D005899 3.9e-169 599.0 612 55.2
MBI18_g19087_MAGBIO Magnolia biondii HOM05D004635 ORTHO05D005899 3.3e-168 595.9 633 54.2
AUR62017259 Chenopodium quinoa HOM05D004635 ORTHO05D005899 5.7e-168 595.1 599 55.8
Phvul.002G288000 Phaseolus vulgaris HOM05D004635 ORTHO05D005899 5.7e-168 595.1 629 53.9
TPR.G12861 Trifolium pratense HOM05D004635 ORTHO05D005899 5.7e-168 595.1 636 54.4
Hund11485 Selenicereus undatus HOM05D004635 ORTHO05D005899 9.7e-168 594.3 618 54.2
VMungo0251G2718 Vigna mungo HOM05D004635 ORTHO05D005899 9.7e-168 594.3 629 52.9
Solyc08g007990.3 Solanum lycopersicum HOM05D004635 ORTHO05D005899 2.2e-167 593.2 599 54.9
Sopen08g003860 Solanum pennellii HOM05D004635 ORTHO05D005899 2.8e-167 592.8 597 55.4
RcHm_v2.0_Chr7g0179141 Rosa chinensis HOM05D004635 ORTHO05D005899 1.8e-166 590.1 579 56.0
Sed0015372 Sechium edule HOM05D004635 ORTHO05D005899 5.3e-166 588.6 583 55.9
CSS0019840 Camellia sinensis var. sinensis HOM05D004635 ORTHO05D005899 6.9e-166 588.2 633 53.6
TAR636G1354 Trochodendron aralioides HOM05D004635 ORTHO05D005899 6.9e-166 588.2 627 53.6
EL10Ac5g12781 Beta vulgaris HOM05D004635 ORTHO05D005899 1.2e-165 587.4 607 55.5
Nn5g27546 Nelumbo nucifera HOM05D004635 ORTHO05D005899 1.3e-164 583.9 629 53.9
Glyma.08G013300 Glycine max HOM05D004635 ORTHO05D005899 1.7e-164 583.6 644 53.4
EL10Ac1g00317 Beta vulgaris HOM05D004635 ORTHO05D005899 2.2e-164 583.2 608 54.8
PGSC0003DMG400005819 Solanum tuberosum HOM05D004635 ORTHO05D005899 2.2e-164 583.2 599 55.3
SGA_v2.0_scaffold146G36254 Striga asiatica HOM05D004635 ORTHO05D005899 2.9e-164 582.8 620 55.3
TAR629G3080 Trochodendron aralioides HOM05D004635 ORTHO05D005899 2.9e-164 582.8 614 54.1
AUR62010616 Chenopodium quinoa HOM05D004635 ORTHO05D005899 8.5e-164 581.3 609 54.5
Nn1g02763 Nelumbo nucifera HOM05D004635 ORTHO05D005899 7.2e-163 578.2 628 53.8
Carub.0004s0410 Capsella rubella HOM05D004635 ORTHO05D005899 2.1e-162 576.6 478 67.4
FAN08G3353 Fragaria x ananassa HOM05D004635 ORTHO05D005899 2.5e-160 569.7 548 57.7
MSTRG.13840 Avicennia marina HOM05D004635 ORTHO05D005899 8.5e-156 554.7 631 52.9
Sed0018462 Sechium edule HOM05D004635 ORTHO05D005899 1.1e-155 554.3 502 60.2
SalBow6G1328 Salvia bowleyana HOM05D004635 ORTHO05D005899 3.0e-153 546.2 624 51.0
ATR0064G111 Amborella trichopoda HOM05D004635 ORTHO05D005899 2.0e-152 543.5 618 52.6
Os02g0114700 Oryza sativa ssp. japonica HOM05D004635 ORTHO05D005899 2.0e-144 516.9 559 52.1
HPP92_020857 Vanilla planifolia HOM05D004635 ORTHO05D005899 3.7e-143 512.7 631 48.5
CiPaw.11G137400 Carya illinoinensis HOM05D004635 ORTHO05D005899 5.0e-140 502.3 527 54.8
BolC6t37157H Brassica oleracea HOM05D004635 ORTHO05D005899 3.6e-138 496.1 267 94.4
Oeu011058.1 Olea europaea HOM05D004635 ORTHO05D005899 1.0e-137 494.6 592 49.3
Zm00001eb209610 Zea mays HOM05D004635 ORTHO05D005899 9.7e-136 488.0 564 50.5
CDE06G0591 Ceratophyllum demersum HOM05D004635 ORTHO05D005899 2.1e-130 470.3 500 53.0
Glyma.05G206400 Glycine max HOM05D004635 ORTHO05D005899 2.0e-128 463.8 555 50.5
SEGI_23350 Sequoiadendron giganteum HOM05D004635 ORTHO05D005899 1.4e-126 457.6 673 43.5
unitig_37.g12250 Utricularia gibba HOM05D004635 ORTHO05D005899 2.9e-124 449.9 593 45.7
BcaC04g18687 Brassica carinata HOM05D004635 ORTHO05D005899 2.8e-119 433.3 353 71.4
BolC9t58686H Brassica oleracea HOM05D004635 ORTHO05D005899 2.4e-118 430.3 353 70.8
C09p58220 Brassica napus HOM05D000111 ORTHO05D000134 1.4e-113 414.5 353 69.1
Zm00001eb229850 Zea mays HOM05D004635 ORTHO05D005899 1.1e-110 404.8 490 49.4
BolC6t37158H Brassica oleracea HOM05D004635 ORTHO05D005899 2.7e-109 400.2 236 89.8
Sc01g0009470 Simmondsia chinensis HOM05D004635 ORTHO05D005899 4.7e-106 389.4 478 50.6
Actinidia14552 Actinidia chinensis HOM05D004635 ORTHO05D005899 1.1e-105 388.3 633 42.5
Pp3c2_34320 Physcomitrium patens HOM05D004635 ORTHO05D005899 5.1e-100 369.4 640 39.8
RcHm_v2.0_Chr2g0099081 Rosa chinensis HOM05D004635 ORTHO05D005899 5.6e-99 365.9 493 47.3
Migut.A00784 Erythranthe guttata HOM05D004635 ORTHO05D005899 8.6e-92 342.0 405 50.4
RcHm_v2.0_Chr7g0211921 Rosa chinensis HOM05D004635 ORTHO05D005899 1.1e-91 341.7 396 52.0
AagrBONN_evm.TU.Sc2ySwM_362.355 Anthoceros agrestis HOM05D004635 ORTHO05D005899 1.6e-90 337.8 629 37.4
SMO171G0086 Selaginella moellendorffii HOM05D004635 ORTHO05D005899 1.2e-85 321.6 568 38.4
Dinv37658 Davidia involucrata HOM05D004635 ORTHO05D005899 3.9e-84 316.6 239 65.7
BcaC08g44514 Brassica carinata HOM05D004635 ORTHO05D005899 2.4e-81 307.4 148 97.3
BcaC08g44517 Brassica carinata HOM05D004635 ORTHO05D005899 1.5e-80 304.7 227 80.6
C06p19660 Brassica napus HOM05D004635 ORTHO05D005899 3.3e-75 287.0 156 94.9
Mapoly0033s0014 Marchantia polymorpha HOM05D004635 ORTHO05D005899 9.9e-72 275.4 538 37.5
FAN26G1714 Fragaria x ananassa HOM05D004635 ORTHO05D005899 6.4e-71 272.7 363 47.7
FAN28G2416 Fragaria x ananassa HOM05D004635 ORTHO05D005899 6.4e-71 272.7 363 47.7
CDE05G1698 Ceratophyllum demersum HOM05D004635 ORTHO05D005899 6.7e-68 262.7 421 42.8
Dinv37657 Davidia involucrata HOM05D004635 ORTHO05D005899 1.1e-65 255.4 236 57.2
CBR_g50931 Chara braunii HOM05D004635 ORTHO05D005899 1.2e-56 225.3 768 27.6
RcHm_v2.0_Chr7g0211961 Rosa chinensis HOM05D004635 ORTHO05D005899 4.6e-53 213.4 201 56.2
PRCOL_00006831 Prasinoderma coloniale HOM05D004635 ORTHO05D005899 3.8e-47 193.7 538 31.0
MCO14G249 Micromonas commoda HOM05D004635 ORTHO05D005899 1.1e-43 182.2 525 30.9
Cre01.g031750 Chlamydomonas reinhardtii HOM05D004635 ORTHO05D005899 1.6e-37 161.8 526 29.5
QL12p018319 Quercus lobata HOM05D004635 ORTHO05D005899 1.6e-37 161.8 310 38.7
VMungo1127G2192 Vigna mungo HOM05D004635 ORTHO05D005899 1.6e-32 145.2 164 47.6
Solyc12g015770.3 Solanum lycopersicum HOM05D000074 ORTHO05D001262 3.4e-19 100.9 60 78.3
AL4G15290 Arabidopsis lyrata HOM05D004635 ORTHO05D079484 9.8e-19 99.4 89 67.4
EL10Ac8g19215 Beta vulgaris HOM05D000238 ORTHO05D001043 2.8e-18 97.8 83 55.4
Lj2C188G12 Lonicera japonica HOM05D004635 ORTHO05D005899 3.1e-17 94.4 268 29.9
EL10Ac5g10794 Beta vulgaris HOM05D004635 ORTHO05D005899 3.7e-10 70.9 64 57.8
Sopen12g007660 Solanum pennellii HOM05D000006 ORTHO05D000695 6.6e-07 60.1 40 70.0
Lj2C188G13 Lonicera japonica HOM05D004635 ORTHO05D005899 1.5e-06 58.9 50 56.0
arahy.Tifrunner.gnm1.ann1.CCN99U Arachis hypogaea HOM05D004635 ORTHO05D085572 4.3e-06 57.4 43 62.8


User provided reference genes

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