Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A07p06540 Brassica napus HOM05D005707 ORTHO05D007276 0.0e+00 1877.1 935 100.0
BraA07t28449Z Brassica rapa HOM05D005707 ORTHO05D007276 0.0e+00 1870.9 935 99.7
BcaC06g35905 Brassica carinata HOM05D005707 ORTHO05D007276 0.0e+00 1870.1 935 99.6
BolC7t41423H Brassica oleracea HOM05D005707 ORTHO05D007276 0.0e+00 1870.1 935 99.6
C07p09820 Brassica napus HOM05D005707 ORTHO05D007276 0.0e+00 1867.0 935 99.5
BcaB06g26833 Brassica carinata HOM05D005707 ORTHO05D007276 0.0e+00 1827.8 935 97.5
Sp3g23690 Schrenkiella parvula HOM05D005707 ORTHO05D007276 0.0e+00 1820.8 935 96.0
SpUn0142_0010 Schrenkiella parvula HOM05D005707 ORTHO05D007276 0.0e+00 1820.8 935 96.0
Thhalv10002393m.g Eutrema salsugineum HOM05D005707 ORTHO05D007276 0.0e+00 1799.3 934 95.0
Carub.0003s2668 Capsella rubella HOM05D005707 ORTHO05D007276 0.0e+00 1762.3 934 92.9
CARHR103040 Cardamine hirsuta HOM05D005707 ORTHO05D007276 0.0e+00 1755.0 934 92.6
AL3G42770 Arabidopsis lyrata HOM05D005707 ORTHO05D007276 0.0e+00 1749.9 934 92.3
AT2G05170 Arabidopsis thaliana HOM05D005707 ORTHO05D007276 0.0e+00 1734.9 934 91.6
Aa31LG9G17700 Aethionema arabicum HOM05D005707 ORTHO05D007276 0.0e+00 1706.8 947 88.9
THA.LOC104808851 Tarenaya hassleriana HOM05D005707 ORTHO05D007276 0.0e+00 1633.6 941 86.7
Sabra14G0126000 Salix brachista HOM05D005707 ORTHO05D007276 0.0e+00 1565.1 944 81.7
Potri.014G165400 Populus trichocarpa HOM05D005707 ORTHO05D007276 0.0e+00 1564.7 945 82.1
Haze_03608 Corylus avellana HOM05D005707 ORTHO05D007276 0.0e+00 1560.0 944 81.1
Gorai.007G166700 Gossypium raimondii HOM05D005707 ORTHO05D007276 0.0e+00 1559.7 943 80.9
Gohir.D11G156360 Gossypium hirsutum HOM05D005707 ORTHO05D007276 0.0e+00 1558.1 943 80.8
Gohir.A11G149550 Gossypium hirsutum HOM05D005707 ORTHO05D007276 0.0e+00 1556.6 943 80.6
Manes.13G062700 Manihot esculenta HOM05D005707 ORTHO05D007276 0.0e+00 1553.1 943 81.0
Prupe.3G200600 Prunus persica HOM05D005707 ORTHO05D007276 0.0e+00 1552.3 944 80.8
Cfa007084 Carpinus fangiana HOM05D005707 ORTHO05D007276 0.0e+00 1552.0 944 81.0
PGR142G3494 Punica granatum HOM05D005707 ORTHO05D007276 0.0e+00 1550.8 942 80.7
Manes.12G065301 Manihot esculenta HOM05D005707 ORTHO05D007276 0.0e+00 1550.4 942 81.2
TAR626G1120 Trochodendron aralioides HOM05D005707 ORTHO05D007276 0.0e+00 1544.6 945 79.9
MD17G1113900 Malus domestica HOM05D005707 ORTHO05D007276 0.0e+00 1540.4 947 80.1
Duzib138G1526 Durio zibethinus HOM05D005707 ORTHO05D007276 0.0e+00 1540.0 943 80.1
Eucgr.A01050 Eucalyptus grandis HOM05D005707 ORTHO05D007276 0.0e+00 1540.0 942 79.7
Dinv07863 Davidia involucrata HOM05D005707 ORTHO05D007276 0.0e+00 1538.9 945 80.1
MD09G1123500 Malus domestica HOM05D005707 ORTHO05D007276 0.0e+00 1532.3 947 80.4
CANSAT64G1567 Cannabis sativa HOM05D005707 ORTHO05D007276 0.0e+00 1530.8 942 80.3
TWI75G1501 Tripterygium wilfordii HOM05D005707 ORTHO05D007276 0.0e+00 1530.4 945 80.4
Atru.BG.42.p Acer truncatum HOM05D005707 ORTHO05D007276 0.0e+00 1525.8 939 79.8
ClCG02G009340 Citrullus lanatus HOM05D005707 ORTHO05D007276 0.0e+00 1525.0 943 79.6
CiPaw.07G002400 Carya illinoinensis HOM05D005707 ORTHO05D007276 0.0e+00 1524.2 944 79.9
RcHm_v2.0_Chr2g0156491 Rosa chinensis HOM05D005707 ORTHO05D007276 0.0e+00 1521.9 944 79.8
TWI18G1214 Tripterygium wilfordii HOM05D005707 ORTHO05D007276 0.0e+00 1520.8 944 79.4
FvH4_6g40910 Fragaria vesca HOM05D005707 ORTHO05D007276 0.0e+00 1520.4 943 79.7
FAN05G2777 Fragaria x ananassa HOM05D005707 ORTHO05D007276 0.0e+00 1519.6 943 79.9
MELO3C025972.2 Cucumis melo HOM05D005707 ORTHO05D007276 0.0e+00 1519.2 943 79.3
FAN14G2372 Fragaria x ananassa HOM05D005707 ORTHO05D007276 0.0e+00 1519.2 943 79.6
CsaV3_6G009510 Cucumis sativus L. HOM05D005707 ORTHO05D007276 0.0e+00 1517.3 944 79.4
Nn1g03422 Nelumbo nucifera HOM05D005707 ORTHO05D007276 0.0e+00 1516.5 943 78.6
Ciclev10018207m.g Citrus clementina HOM05D005707 ORTHO05D007276 0.0e+00 1513.4 941 79.5
Actinidia09778 Actinidia chinensis HOM05D005707 ORTHO05D007276 0.0e+00 1511.5 943 79.2
CSS0003308 Camellia sinensis var. sinensis HOM05D005707 ORTHO05D007276 0.0e+00 1511.1 942 79.1
CSS0049316 Camellia sinensis var. sinensis HOM05D005707 ORTHO05D007276 0.0e+00 1511.1 942 79.1
GSVIVG01030049001 Vitis vinifera HOM05D005707 ORTHO05D007276 0.0e+00 1511.1 943 79.5
FAN02G0692 Fragaria x ananassa HOM05D005707 ORTHO05D007276 0.0e+00 1506.9 945 79.2
QL06p053011 Quercus lobata HOM05D005707 ORTHO05D007276 0.0e+00 1506.1 955 78.3
MBI16_g36319_MAGBIO Magnolia biondii HOM05D005707 ORTHO05D007276 0.0e+00 1505.0 944 78.6
FAN09G4573 Fragaria x ananassa HOM05D005707 ORTHO05D007276 0.0e+00 1504.2 943 78.9
Sed0013138 Sechium edule HOM05D005707 ORTHO05D007276 0.0e+00 1501.9 939 79.4
Hma1.2p1_1267F.1_g271460 Hydrangea macrophylla HOM05D005707 ORTHO05D007276 0.0e+00 1500.7 943 78.3
Nn1g03246 Nelumbo nucifera HOM05D005707 ORTHO05D007276 0.0e+00 1490.3 944 77.9
Sopen06g023670 Solanum pennellii HOM05D005707 ORTHO05D007276 0.0e+00 1489.9 941 77.3
PGSC0003DMG400026068 Solanum tuberosum HOM05D005707 ORTHO05D007276 0.0e+00 1489.6 940 76.8
Nitab4.5_0001082g0050 Nicotiana tabacum HOM05D005707 ORTHO05D007276 0.0e+00 1488.0 940 77.0
Lj8A134G73 Lonicera japonica HOM05D005707 ORTHO05D007276 0.0e+00 1486.9 940 77.8
Rhsim06G0174400 Rhododendron simsii HOM05D005707 ORTHO05D007276 0.0e+00 1486.9 944 77.5
CAN.G308.64 Capsicum annuum HOM05D005707 ORTHO05D007276 0.0e+00 1486.1 940 76.7
Oeu040469.1 Olea europaea HOM05D005707 ORTHO05D007276 0.0e+00 1485.3 946 77.9
Lj1C792T2 Lonicera japonica HOM05D005707 ORTHO05D007276 0.0e+00 1483.8 942 77.0
Ca_27368_v3 Cicer arietinum L. HOM05D005707 ORTHO05D007276 0.0e+00 1483.0 953 76.7
Phvul.010G042100 Phaseolus vulgaris HOM05D005707 ORTHO05D007276 0.0e+00 1482.2 948 77.2
Glyma.07G119500 Glycine max HOM05D005707 ORTHO05D007276 0.0e+00 1481.1 951 77.2
HanXRQChr03g0075251 Helianthus annuus HOM05D005707 ORTHO05D007276 0.0e+00 1481.1 935 77.0
Solyc06g065170.4 Solanum lycopersicum HOM05D005707 ORTHO05D007276 0.0e+00 1481.1 941 76.6
Lj1g0027558 Lotus japonicus HOM05D005707 ORTHO05D007276 0.0e+00 1479.5 951 76.4
Lsat_1_v5_gn_0_5460 Lactuca sativa HOM05D005707 ORTHO05D007276 0.0e+00 1478.8 939 77.6
Sed0020801 Sechium edule HOM05D005707 ORTHO05D007276 0.0e+00 1478.0 943 77.7
Aqoxy2G03044 Aquilegia oxysepala HOM05D005707 ORTHO05D007276 0.0e+00 1476.1 944 77.2
ECA240G2058 Erigeron canadensis HOM05D005707 ORTHO05D007276 0.0e+00 1476.1 938 76.8
Nitab4.5_0000303g0290 Nicotiana tabacum HOM05D005707 ORTHO05D007276 0.0e+00 1476.1 941 76.9
VMungo0331G1616 Vigna mungo HOM05D005707 ORTHO05D007276 0.0e+00 1475.7 947 77.0
Medtr1g019500 Medicago truncatula HOM05D005707 ORTHO05D007276 0.0e+00 1474.9 953 76.7
PSO732G0538 Papaver somniferum HOM05D005707 ORTHO05D007276 0.0e+00 1474.1 943 76.9
Glyma.03G104400 Glycine max HOM05D005707 ORTHO05D007276 0.0e+00 1473.4 950 76.5
MSTRG.14925 Avicennia marina HOM05D005707 ORTHO05D007276 0.0e+00 1472.6 943 77.4
PSO675G5925 Papaver somniferum HOM05D005707 ORTHO05D007276 0.0e+00 1472.2 943 77.0
Lj6g0020016 Lotus japonicus HOM05D005707 ORTHO05D007276 0.0e+00 1471.8 953 76.5
arahy.Tifrunner.gnm1.ann1.T3MKLR Arachis hypogaea HOM05D005707 ORTHO05D007276 0.0e+00 1470.3 946 76.4
Lsat_1_v5_gn_9_90020 Lactuca sativa HOM05D005707 ORTHO05D007276 0.0e+00 1470.3 951 76.7
Peaxi162Scf00268g00614 Petunia axillaris HOM05D005707 ORTHO05D007276 0.0e+00 1469.9 942 77.5
TPR.G3804 Trifolium pratense HOM05D005707 ORTHO05D007276 0.0e+00 1469.5 950 76.1
Lalb_Chr19g0124221 Lupinus albus HOM05D005707 ORTHO05D007276 0.0e+00 1463.7 952 76.1
Cc07_g12010 Coffea canephora HOM05D005707 ORTHO05D007276 0.0e+00 1455.3 948 76.5
Migut.M00030 Erythranthe guttata HOM05D005707 ORTHO05D007276 0.0e+00 1453.0 940 76.6
arahy.Tifrunner.gnm1.ann1.DQM4AF Arachis hypogaea HOM05D005707 ORTHO05D007276 0.0e+00 1449.9 980 73.9
DCAR_012906 Daucus carota HOM05D005707 ORTHO05D007276 0.0e+00 1448.3 945 75.7
AUR62025658 Chenopodium quinoa HOM05D005707 ORTHO05D007276 0.0e+00 1446.8 940 76.4
AUR62001346 Chenopodium quinoa HOM05D005707 ORTHO05D007276 0.0e+00 1445.6 940 76.3
Hund18608 Selenicereus undatus HOM05D005707 ORTHO05D007276 0.0e+00 1437.9 953 74.9
EL10Ac7g18165 Beta vulgaris HOM05D005707 ORTHO05D007276 0.0e+00 1437.6 940 76.3
COL.COLO4_09234 Corchorus olitorius HOM05D005707 ORTHO05D007276 0.0e+00 1435.2 951 75.9
Ah.15g094340 Amaranthus hybridus HOM05D005707 ORTHO05D007276 0.0e+00 1424.8 939 76.0
vmacro12103 Vaccinium macrocarpon HOM05D005707 ORTHO05D007276 0.0e+00 1423.7 944 75.4
ATR0626G192 Amborella trichopoda HOM05D005707 ORTHO05D007276 0.0e+00 1394.4 941 72.9
SGA_v2.0_scaffold73G24514 Striga asiatica HOM05D005707 ORTHO05D007276 0.0e+00 1383.6 940 73.2
Thecc.01G191800 Theobroma cacao HOM05D005707 ORTHO05D007276 0.0e+00 1378.2 832 81.2
Zm00001eb420950 Zea mays HOM05D005707 ORTHO05D007276 0.0e+00 1374.0 958 68.9
Os04g0382700 Oryza sativa ssp. japonica HOM05D005707 ORTHO05D007276 0.0e+00 1372.5 943 69.4
unitig_37.g12597 Utricularia gibba HOM05D005707 ORTHO05D007276 0.0e+00 1331.6 939 70.2
SEGI_38374 Sequoiadendron giganteum HOM05D005707 ORTHO05D007276 0.0e+00 1309.3 945 68.1
DCAR_028089 Daucus carota HOM05D005707 ORTHO05D007276 0.0e+00 1280.0 854 74.8
Oeu012343.5 Olea europaea HOM05D005707 ORTHO05D007276 0.0e+00 1272.3 940 68.9
Psat6g013160 Pisum sativum HOM05D005707 ORTHO05D007276 0.0e+00 1270.8 846 74.8
Mapoly0022s0120 Marchantia polymorpha HOM05D005707 ORTHO05D007276 0.0e+00 1177.9 977 60.5
Cpa.g.sc211.13 Carica papaya HOM05D005707 ORTHO05D007276 0.0e+00 1176.0 941 64.9
Lalb_Chr01g0023301 Lupinus albus HOM05D005707 ORTHO05D007276 0.0e+00 1174.8 731 78.5
AagrBONN_evm.TU.Sc2ySwM_344.1573 Anthoceros agrestis HOM05D005707 ORTHO05D007276 0.0e+00 1174.5 954 61.6
Sc15g0001000 Simmondsia chinensis HOM05D005707 ORTHO05D007276 0.0e+00 1121.7 701 79.2
Pp3c25_5560 Physcomitrium patens HOM05D005707 ORTHO05D007276 0.0e+00 1105.5 1005 55.2
SMO329G0026 Selaginella moellendorffii HOM05D005707 ORTHO05D007276 0.0e+00 1097.0 937 59.8
Hma1.2p1_2056F.1_g312820 Hydrangea macrophylla HOM05D005707 ORTHO05D007276 2.0e-295 1019.2 643 77.3
Hma1.2p1_1267F.1_g271470 Hydrangea macrophylla HOM05D005707 ORTHO05D007276 5.4e-293 1011.1 641 76.9
CDE12G0215 Ceratophyllum demersum HOM05D005707 ORTHO05D007276 4.9e-270 934.9 701 65.0
CBR_g20017 Chara braunii HOM05D005707 ORTHO05D007276 1.1e-224 784.3 763 52.4
Lsat_1_v5_gn_9_104540 Lactuca sativa HOM05D005707 ORTHO05D007276 1.0e-203 714.5 463 74.9
HPP92_028369 Vanilla planifolia HOM05D005707 ORTHO05D007276 1.4e-179 634.4 444 71.2
HPP92_028368 Vanilla planifolia HOM05D005707 ORTHO05D007276 2.0e-122 444.5 303 69.0
Cre02.g095074 Chlamydomonas reinhardtii HOM05D005707 ORTHO05D007276 1.6e-111 408.3 1314 25.4
PRCOL_00006472 Prasinoderma coloniale HOM05D005707 ORTHO05D007276 1.3e-110 405.2 631 39.1
Lalb_Chr01g0023291 Lupinus albus HOM05D005707 ORTHO05D007276 3.6e-79 300.8 202 73.8
Nn6g32392 Nelumbo nucifera HOM05D005707 ORTHO05D007276 7.7e-74 283.1 207 70.5
HPP92_014038 Vanilla planifolia HOM05D005707 ORTHO05D007276 7.8e-58 229.9 179 65.9
SEGI_06176 Sequoiadendron giganteum HOM05D005707 ORTHO05D007276 4.6e-50 204.1 300 40.3
Nn6g32391 Nelumbo nucifera HOM05D005707 ORTHO05D007276 9.5e-48 196.4 107 86.0
Peaxi162Scf00585g00082 Petunia axillaris HOM05D000636 ORTHO05D002338 1.6e-42 179.1 116 74.1
HPP92_014037 Vanilla planifolia HOM05D005707 ORTHO05D048631 1.5e-37 162.5 139 60.4
HPP92_014036 Vanilla planifolia HOM05D005707 ORTHO05D007276 5.1e-33 147.5 201 40.3
Nn2g13354 Nelumbo nucifera HOM05D005707 ORTHO05D007276 4.9e-28 131.0 64 90.6
VMungo0331G0660 Vigna mungo HOM05D000100 ORTHO05D000052 3.1e-14 85.1 80 55.0


User provided reference genes

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