Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A06p03540 Brassica napus HOM05D006779 ORTHO05D008491 1.3e-126 456.4 246 100.0
BraA06t23562Z Brassica rapa HOM05D006779 ORTHO05D008491 9.0e-123 443.7 244 99.2
BolC6t35591H Brassica oleracea HOM05D006779 ORTHO05D008491 5.8e-122 441.0 243 97.9
Sp1g36470 Schrenkiella parvula HOM05D006779 ORTHO05D008491 1.8e-110 402.9 246 88.6
Thhalv10011741m.g Eutrema salsugineum HOM05D006779 ORTHO05D008491 2.5e-109 399.1 246 89.0
BcaNung06359 Brassica carinata HOM05D006779 ORTHO05D008491 1.5e-106 389.8 247 88.7
AT1G49590 Arabidopsis thaliana HOM05D006779 ORTHO05D008491 4.8e-100 368.2 246 83.7
Carub.0001s3879 Capsella rubella HOM05D006779 ORTHO05D008491 1.4e-94 350.1 247 80.6
Aa31LG10G4420 Aethionema arabicum HOM05D006779 ORTHO05D008491 8.8e-94 347.4 255 78.0
C06p04620 Brassica napus HOM05D006779 ORTHO05D008491 2.2e-92 342.8 200 97.0
AL1G56960 Arabidopsis lyrata HOM05D006779 ORTHO05D008491 7.0e-91 337.8 262 75.6
Sabra09G0080600 Salix brachista HOM05D006779 ORTHO05D008491 6.1e-63 245.0 251 59.8
Potri.009G105500 Populus trichocarpa HOM05D006779 ORTHO05D008491 1.0e-62 244.2 251 61.0
FvH4_2g06680 Fragaria vesca HOM05D006779 ORTHO05D008491 6.4e-60 235.0 255 58.0
Actinidia00459 Actinidia chinensis HOM05D006779 ORTHO05D008491 1.4e-59 233.8 255 54.1
FAN24G0787 Fragaria x ananassa HOM05D006779 ORTHO05D008491 1.4e-59 233.8 255 57.6
Manes.15G142500 Manihot esculenta HOM05D006779 ORTHO05D008491 4.1e-59 232.3 253 55.3
Dinv23582 Davidia involucrata HOM05D006779 ORTHO05D008491 1.2e-58 230.7 259 55.6
FAN15G3147 Fragaria x ananassa HOM05D006779 ORTHO05D008491 1.6e-58 230.3 255 56.9
CsaV3_7G008730 Cucumis sativus L. HOM05D006779 ORTHO05D008491 2.0e-58 229.9 261 54.8
FAN20G2937 Fragaria x ananassa HOM05D006779 ORTHO05D008491 3.5e-58 229.2 255 56.5
Eucgr.I01169 Eucalyptus grandis HOM05D006779 ORTHO05D008491 7.8e-58 228.0 255 55.7
Sed0011670 Sechium edule HOM05D006779 ORTHO05D008491 1.3e-57 227.3 257 54.5
GSVIVG01031784001 Vitis vinifera HOM05D006779 ORTHO05D008491 1.3e-57 227.3 257 58.0
Thecc.02G097400 Theobroma cacao HOM05D006779 ORTHO05D008491 3.0e-57 226.1 252 57.5
Atru.chr5.2773 Acer truncatum HOM05D006779 ORTHO05D008491 8.6e-57 224.6 251 57.4
RcHm_v2.0_Chr6g0258731 Rosa chinensis HOM05D006779 ORTHO05D008491 8.6e-57 224.6 255 55.3
CiPaw.05G054000 Carya illinoinensis HOM05D006779 ORTHO05D008491 4.3e-56 222.2 255 56.1
Prupe.8G119200 Prunus persica HOM05D006779 ORTHO05D008491 7.3e-56 221.5 253 55.3
PGR142G0644 Punica granatum HOM05D006779 ORTHO05D008491 1.6e-55 220.3 256 54.7
Dinv42131 Davidia involucrata HOM05D006779 ORTHO05D008491 2.1e-55 219.9 266 55.3
MD05G1075500 Malus domestica HOM05D006779 ORTHO05D008491 3.6e-55 219.2 253 54.5
Solyc01g108430.3 Solanum lycopersicum HOM05D006779 ORTHO05D008491 4.7e-55 218.8 263 54.0
CSS0011815 Camellia sinensis var. sinensis HOM05D000591 ORTHO05D000579 6.2e-55 218.4 261 51.3
TWI79G0004 Tripterygium wilfordii HOM05D006779 ORTHO05D008491 6.2e-55 218.4 254 56.7
MSTRG.16763 Avicennia marina HOM05D006779 ORTHO05D008491 8.0e-55 218.0 253 55.7
Haze_01903 Corylus avellana HOM05D006779 ORTHO05D008491 8.0e-55 218.0 257 56.0
PGSC0003DMG400025811 Solanum tuberosum HOM05D006779 ORTHO05D008491 8.0e-55 218.0 263 54.0
arahy.Tifrunner.gnm1.ann1.T066AP Arachis hypogaea HOM05D006779 ORTHO05D008491 1.0e-54 217.6 255 52.9
AUR62034187 Chenopodium quinoa HOM05D006779 ORTHO05D008491 1.0e-54 217.6 247 57.1
Lalb_Chr09g0328181 Lupinus albus HOM05D006779 ORTHO05D008491 1.0e-54 217.6 255 53.7
QL11p037315 Quercus lobata HOM05D006779 ORTHO05D008491 1.0e-54 217.6 252 55.6
Sopen01g050660 Solanum pennellii HOM05D006779 ORTHO05D008491 1.0e-54 217.6 263 53.6
Gohir.A03G191700 Gossypium hirsutum HOM05D006779 ORTHO05D008491 1.4e-54 217.2 251 56.6
arahy.Tifrunner.gnm1.ann1.8ZG09Z Arachis hypogaea HOM05D006779 ORTHO05D008491 1.8e-54 216.9 259 54.8
arahy.Tifrunner.gnm1.ann1.QJKD6Y Arachis hypogaea HOM05D006779 ORTHO05D008491 1.8e-54 216.9 255 54.5
Gorai.005G240600 Gossypium raimondii HOM05D006779 ORTHO05D008491 1.8e-54 216.9 251 56.6
Gohir.D02G212600 Gossypium hirsutum HOM05D006779 ORTHO05D008491 2.3e-54 216.5 251 56.6
Migut.B00314 Erythranthe guttata HOM05D006779 ORTHO05D008491 4.0e-54 215.7 264 53.4
Oeu064516.1 Olea europaea HOM05D006779 ORTHO05D008491 2.6e-53 213.0 257 51.0
Nitab4.5_0004334g0110 Nicotiana tabacum HOM05D006779 ORTHO05D008491 9.8e-53 211.1 263 51.3
Cc02_g18560 Coffea canephora HOM05D006779 ORTHO05D008491 1.3e-52 210.7 263 52.1
Glyma.01G146900 Glycine max HOM05D006779 ORTHO05D008491 1.7e-52 210.3 254 51.6
Glyma.10G112900 Glycine max HOM05D006779 ORTHO05D008491 1.7e-52 210.3 254 51.6
Ciclev10029963m.g Citrus clementina HOM05D006779 ORTHO05D008491 2.2e-52 209.9 259 53.7
Phvul.007G247000 Phaseolus vulgaris HOM05D006779 ORTHO05D008491 2.9e-52 209.5 254 49.2
DCAR_029018 Daucus carota HOM05D000144 ORTHO05D003364 4.9e-52 208.8 255 54.1
Glyma.02G159500 Glycine max HOM05D006779 ORTHO05D008491 6.4e-52 208.4 254 53.1
SalBow6G0615 Salvia bowleyana HOM05D006779 ORTHO05D008491 6.4e-52 208.4 260 54.2
EL10Ac3g06870 Beta vulgaris HOM05D006779 ORTHO05D008491 2.4e-51 206.5 254 54.7
Sc18g0004890 Simmondsia chinensis HOM05D006779 ORTHO05D008491 2.4e-51 206.5 255 54.5
vmacro02181 Vaccinium macrocarpon HOM05D006779 ORTHO05D008491 2.4e-51 206.5 297 46.8
CARHR039640 Cardamine hirsuta HOM05D006779 ORTHO05D008491 3.2e-51 206.1 147 83.0
TWI31G0027 Tripterygium wilfordii HOM05D006779 ORTHO05D008491 7.0e-51 204.9 254 54.3
SGA_v2.0_scaffold90G27693 Striga asiatica HOM05D006779 ORTHO05D008491 9.2e-51 204.5 258 47.3
AUR62022456 Chenopodium quinoa HOM05D006779 ORTHO05D008491 4.6e-50 202.2 286 49.0
HanXRQChr10g0303251 Helianthus annuus HOM05D006779 ORTHO05D008491 6.0e-50 201.8 244 53.7
SGA_v2.0_scaffold90G27688 Striga asiatica HOM05D006779 ORTHO05D008491 7.8e-50 201.4 258 46.9
CAN.G322.16 Capsicum annuum HOM05D006779 ORTHO05D008491 1.3e-49 200.7 250 52.8
Lj5C207T4 Lonicera japonica HOM05D006779 ORTHO05D008491 1.3e-49 200.7 255 53.7
COL.COLO4_32686 Corchorus olitorius HOM05D006779 ORTHO05D008491 1.7e-49 200.3 253 54.2
Rhsim11G0168500 Rhododendron simsii HOM05D006779 ORTHO05D008491 1.7e-49 200.3 293 45.4
Nitab4.5_0005583g0020 Nicotiana tabacum HOM05D006779 ORTHO05D008491 8.6e-49 198.0 263 49.4
CANSAT25G0176 Cannabis sativa HOM05D006779 ORTHO05D008491 1.9e-48 196.8 251 51.8
ClCG02G005780 Citrullus lanatus HOM05D006779 ORTHO05D008491 2.5e-48 196.4 303 45.2
Psat7g121840 Pisum sativum HOM05D006779 ORTHO05D008491 2.5e-48 196.4 256 50.4
HPP92_004257 Vanilla planifolia HOM05D006779 ORTHO05D008491 4.3e-48 195.7 254 51.2
ECA234G4762 Erigeron canadensis HOM05D006779 ORTHO05D008491 9.5e-48 194.5 247 51.0
Ah.04g152710 Amaranthus hybridus HOM05D006779 ORTHO05D008491 2.1e-47 193.4 248 50.4
Ca_18655_v3 Cicer arietinum L. HOM05D006779 ORTHO05D008491 3.6e-47 192.6 254 50.0
Hund00325 Selenicereus undatus HOM05D006779 ORTHO05D008491 6.2e-47 191.8 253 52.2
Nn5g30192 Nelumbo nucifera HOM05D006779 ORTHO05D008491 1.1e-46 191.0 267 50.6
Lj4g0006122 Lotus japonicus HOM05D006779 ORTHO05D008491 1.2e-45 187.6 250 51.6
Aqoxy6G01411 Aquilegia oxysepala HOM05D006779 ORTHO05D008491 1.5e-45 187.2 262 47.3
Peaxi162Scf00016g01637 Petunia axillaris HOM05D006779 ORTHO05D008491 1.5e-45 187.2 251 50.6
PSO541G4058 Papaver somniferum HOM05D006779 ORTHO05D008491 2.0e-45 186.8 258 48.4
Medtr4g086640 Medicago truncatula HOM05D006779 ORTHO05D008491 2.2e-44 183.3 251 50.6
unitig_60.g25783 Utricularia gibba HOM05D006779 ORTHO05D008491 3.7e-44 182.6 250 47.6
PSO675G5018 Papaver somniferum HOM05D006779 ORTHO05D008491 1.2e-42 177.6 258 47.3
MBI02_g21199_MAGBIO Magnolia biondii HOM05D006779 ORTHO05D008491 2.7e-42 176.4 276 46.7
Lsat_1_v5_gn_5_113321 Lactuca sativa HOM05D006779 ORTHO05D008491 1.3e-41 174.1 249 45.8
MELO3C018438.2 Cucumis melo HOM05D006779 ORTHO05D008491 1.2e-37 161.0 215 53.0
SHI05379 Sapria himalayana HOM05D006779 ORTHO05D008491 1.5e-37 160.6 259 43.6
CDE06G1966 Ceratophyllum demersum HOM05D006779 ORTHO05D008491 9.9e-37 157.9 241 44.8
Zm00001eb373090 Zea mays HOM05D006779 ORTHO05D008491 2.1e-34 150.2 247 45.3
Mapoly0157s0003 Marchantia polymorpha HOM05D006779 ORTHO05D008491 3.5e-34 149.4 300 40.3
Pp3c14_26080 Physcomitrium patens HOM05D006779 ORTHO05D008491 4.9e-28 129.0 296 38.2
ATR0097G032 Amborella trichopoda HOM05D006779 ORTHO05D008491 1.1e-27 127.9 235 38.7
FAN20G1913 Fragaria x ananassa HOM05D006779 ORTHO05D008491 1.6e-26 124.0 152 55.9
Cpa.g.sc62.36 Carica papaya HOM05D006779 ORTHO05D008491 1.0e-25 121.3 100 65.0
SMO367G0139 Selaginella moellendorffii HOM05D006779 ORTHO05D008491 1.0e-25 121.3 272 36.8
AagrBONN_evm.TU.Sc2ySwM_344.4302 Anthoceros agrestis HOM05D006779 ORTHO05D008491 8.7e-25 118.2 286 35.0
TAR628G0388 Trochodendron aralioides HOM05D006779 ORTHO05D008491 2.5e-24 116.7 111 56.8
HPP92_004235 Vanilla planifolia HOM05D006779 ORTHO05D008491 9.6e-24 114.8 208 45.7
AUR62042088 Chenopodium quinoa HOM05D006779 ORTHO05D008491 1.4e-22 110.9 196 48.0
TPR.G23531 Trifolium pratense HOM05D006779 ORTHO05D008491 1.8e-22 110.5 154 50.6
CBR_g17671 Chara braunii HOM05D006779 ORTHO05D008491 6.9e-22 108.6 337 32.6
CSS0021002 Camellia sinensis var. sinensis HOM05D006779 ORTHO05D008491 9.9e-21 104.8 183 44.8
CSS0024784 Camellia sinensis var. sinensis HOM05D006779 ORTHO05D008491 1.2e-18 97.8 183 41.5
TPR.G23511 Trifolium pratense HOM05D006779 ORTHO05D008491 5.1e-17 92.4 70 62.9
Os06g0215200 Oryza sativa ssp. japonica HOM05D006779 ORTHO05D008491 3.6e-15 86.3 70 57.1
C03p74890 Brassica napus HOM05D013368 ORTHO05D031982 2.6e-13 80.1 56 67.9
CDE03G0027 Ceratophyllum demersum HOM05D006779 ORTHO05D008491 4.5e-13 79.3 241 33.6
CSS0022737 Camellia sinensis var. sinensis HOM05D006779 ORTHO05D008491 2.4e-11 73.6 176 36.9
BcaNung00771 Brassica carinata HOM05D013368 ORTHO05D031982 4.2e-11 72.8 68 57.4
CSS0005405 Camellia sinensis var. sinensis HOM05D006779 ORTHO05D008491 1.8e-09 67.4 145 38.6
CSS0011003 Camellia sinensis var. sinensis HOM05D006779 ORTHO05D008491 1.8e-09 67.4 145 38.6
BolC7t43482H Brassica oleracea HOM05D013368 ORTHO05D031982 1.1e-08 64.7 68 58.8
Ah.08g219340 Amaranthus hybridus HOM05D006779 ORTHO05D008491 2.4e-06 57.0 87 44.8
Cre06.g309150 Chlamydomonas reinhardtii HOM05D006779 ORTHO05D008491 3.1e-06 56.6 284 29.6
BcaC01g03242 Brassica carinata HOM05D013368 ORTHO05D091529 6.9e-06 55.5 50 58.0


User provided reference genes

Program Settings