Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A04p14360 Brassica napus HOM05D004635 ORTHO05D005899 0.0e+00 1077.0 574 100.0
BraA04t17085Z Brassica rapa HOM05D004635 ORTHO05D005899 0.0e+00 1075.8 574 99.8
C04p48290 Brassica napus HOM05D004635 ORTHO05D005899 4.0e-307 1057.4 574 95.1
BcaC02g08976 Brassica carinata HOM05D004635 ORTHO05D005899 8.9e-307 1056.2 574 95.1
BolC4t26422H Brassica oleracea HOM05D004635 ORTHO05D005899 8.9e-307 1056.2 574 95.1
BcaB06g27604 Brassica carinata HOM05D004635 ORTHO05D005899 8.1e-292 1006.5 583 92.8
Sp7g00720 Schrenkiella parvula HOM05D004635 ORTHO05D005899 1.4e-272 942.6 600 82.8
SpUn0010_0200 Schrenkiella parvula HOM05D004635 ORTHO05D005899 1.4e-272 942.6 600 82.8
A07p20710 Brassica napus HOM05D004635 ORTHO05D005899 4.8e-268 927.5 589 84.6
BraA07t29762Z Brassica rapa HOM05D004635 ORTHO05D005899 1.1e-264 916.4 586 83.6
Carub.0007s3429 Capsella rubella HOM05D004635 ORTHO05D005899 2.2e-260 902.1 615 77.4
Thhalv10027696m.g Eutrema salsugineum HOM05D004635 ORTHO05D005899 3.7e-260 901.4 597 80.2
AT5G41190 Arabidopsis thaliana HOM05D004635 ORTHO05D005899 9.1e-259 896.7 605 77.5
AL7G48240 Arabidopsis lyrata HOM05D004635 ORTHO05D005899 2.6e-258 895.2 616 76.1
BcaB02g07904 Brassica carinata HOM05D004635 ORTHO05D005899 5.0e-249 864.4 588 80.3
Aa31LG9G660 Aethionema arabicum HOM05D004635 ORTHO05D005899 1.6e-234 816.2 603 72.8
BcaC08g44516 Brassica carinata HOM05D004635 ORTHO05D005899 4.0e-230 801.6 588 75.2
THA.LOC104818064 Tarenaya hassleriana HOM05D004635 ORTHO05D005899 2.4e-219 765.8 617 68.4
CARHR213190 Cardamine hirsuta HOM05D004635 ORTHO05D005899 5.4e-211 738.0 589 67.1
Atru.chr9.2220 Acer truncatum HOM05D004635 ORTHO05D005899 6.4e-196 688.0 642 60.1
COL.COLO4_34438 Corchorus olitorius HOM05D004635 ORTHO05D005899 3.2e-195 685.6 620 61.5
Ciclev10019281m.g Citrus clementina HOM05D004635 ORTHO05D005899 8.1e-191 671.0 637 59.0
Eucgr.E00572 Eucalyptus grandis HOM05D004635 ORTHO05D005899 2.4e-190 669.5 620 58.9
PGR042G2640 Punica granatum HOM05D004635 ORTHO05D005899 4.0e-190 668.7 612 59.0
Thecc.03G276500 Theobroma cacao HOM05D004635 ORTHO05D005899 4.0e-190 668.7 608 60.7
RcHm_v2.0_Chr7g0211871 Rosa chinensis HOM05D004635 ORTHO05D005899 5.2e-190 668.3 627 59.0
CANSAT78G0227 Cannabis sativa HOM05D004635 ORTHO05D005899 1.1e-187 660.6 587 61.3
CsaV3_5G002950 Cucumis sativus L. HOM05D004635 ORTHO05D005899 1.4e-187 660.2 617 57.4
Duzib084G1397 Durio zibethinus HOM05D004635 ORTHO05D005899 2.4e-187 659.4 626 59.7
MELO3C005661.2 Cucumis melo HOM05D004635 ORTHO05D005899 4.2e-187 658.7 616 57.6
Manes.01G063000 Manihot esculenta HOM05D004635 ORTHO05D005899 1.5e-184 650.2 627 57.3
Thhalv10009994m.g Eutrema salsugineum HOM05D004635 ORTHO05D005899 4.3e-184 648.7 585 63.1
ClCG01G002860 Citrullus lanatus HOM05D004635 ORTHO05D005899 5.6e-184 648.3 619 56.4
Gohir.D09G186900 Gossypium hirsutum HOM05D004635 ORTHO05D005899 8.1e-183 644.4 621 59.1
Dinv38955 Davidia involucrata HOM05D004635 ORTHO05D005899 1.8e-182 643.3 632 57.0
Gohir.A09G192700 Gossypium hirsutum HOM05D004635 ORTHO05D005899 2.4e-182 642.9 617 58.5
Gorai.006G209700 Gossypium raimondii HOM05D004635 ORTHO05D005899 2.4e-182 642.9 622 58.0
Cpa.g.sc202.13 Carica papaya HOM05D004635 ORTHO05D005899 6.9e-182 641.3 617 58.8
Lj6A677T80 Lonicera japonica HOM05D004635 ORTHO05D005899 9.0e-182 641.0 633 55.6
FAN04G0694 Fragaria x ananassa HOM05D004635 ORTHO05D005899 2.6e-181 639.4 615 57.4
HanXRQChr13g0416481 Helianthus annuus HOM05D004635 ORTHO05D005899 4.5e-181 638.6 588 60.0
MD14G1101800 Malus domestica HOM05D004635 ORTHO05D005899 5.8e-181 638.3 625 56.3
FAN13G3179 Fragaria x ananassa HOM05D004635 ORTHO05D005899 9.9e-181 637.5 617 57.9
FAN18G0535 Fragaria x ananassa HOM05D004635 ORTHO05D005899 9.9e-181 637.5 617 58.0
QL01p003129 Quercus lobata HOM05D004635 ORTHO05D005899 2.9e-180 636.0 625 58.1
FvH4_5g23090 Fragaria vesca HOM05D004635 ORTHO05D005899 3.8e-180 635.6 617 58.0
Peaxi162Scf00102g01512 Petunia axillaris HOM05D004635 ORTHO05D005899 6.4e-180 634.8 612 57.5
Actinidia02016 Actinidia chinensis HOM05D004635 ORTHO05D005899 8.4e-180 634.4 633 55.9
FAN18G1690 Fragaria x ananassa HOM05D004635 ORTHO05D005899 1.9e-179 633.3 617 57.7
Sabra03G0088200 Salix brachista HOM05D004635 ORTHO05D005899 9.3e-179 630.9 628 56.2
Potri.003G124700 Populus trichocarpa HOM05D004635 ORTHO05D005899 2.7e-178 629.4 629 55.6
TWI81G1014 Tripterygium wilfordii HOM05D004635 ORTHO05D005899 4.6e-178 628.6 620 57.3
Prupe.5G097400 Prunus persica HOM05D004635 ORTHO05D005899 6.0e-178 628.2 626 56.4
PSO017G3139 Papaver somniferum HOM05D004635 ORTHO05D005899 3.9e-177 625.5 604 57.5
Lj4g0017456 Lotus japonicus HOM05D004635 ORTHO05D005899 5.1e-177 625.2 595 56.6
PSO170G0760 Papaver somniferum HOM05D004635 ORTHO05D005899 6.7e-177 624.8 602 57.0
Lsat_1_v5_gn_6_87181 Lactuca sativa HOM05D004635 ORTHO05D005899 1.1e-176 624.0 593 57.2
DCAR_000603 Daucus carota HOM05D004635 ORTHO05D005899 1.5e-176 623.6 618 56.8
PSO384G0809 Papaver somniferum HOM05D004635 ORTHO05D005899 1.5e-176 623.6 605 56.4
Cfa012156 Carpinus fangiana HOM05D004635 ORTHO05D005899 1.9e-176 623.2 602 57.8
Haze_08871 Corylus avellana HOM05D004635 ORTHO05D005899 1.3e-175 620.5 601 57.7
PSO339G4625 Papaver somniferum HOM05D004635 ORTHO05D005899 1.3e-175 620.5 608 56.2
Aqoxy5G04278 Aquilegia oxysepala HOM05D004635 ORTHO05D005899 8.1e-175 617.8 629 56.1
ECA240G4094 Erigeron canadensis HOM05D004635 ORTHO05D005899 1.4e-174 617.1 597 57.1
Medtr8g098490 Medicago truncatula HOM05D004635 ORTHO05D005899 1.4e-174 617.1 618 55.8
arahy.Tifrunner.gnm1.ann1.Y4HLQF Arachis hypogaea HOM05D004635 ORTHO05D005899 1.8e-174 616.7 605 56.5
arahy.Tifrunner.gnm1.ann1.NB74KP Arachis hypogaea HOM05D004635 ORTHO05D005899 3.1e-174 615.9 613 56.1
vmacro11312 Vaccinium macrocarpon HOM05D004635 ORTHO05D005899 5.3e-174 615.1 610 57.0
Hma1.2p1_0377F.1_g139240 Hydrangea macrophylla HOM05D004635 ORTHO05D005899 5.8e-173 611.7 608 56.4
arahy.Tifrunner.gnm1.ann1.BGY2GF Arachis hypogaea HOM05D004635 ORTHO05D005899 9.9e-173 610.9 607 56.0
Cc08_g14490 Coffea canephora HOM05D004635 ORTHO05D005899 9.9e-173 610.9 629 54.1
PGSC0003DMG400029793 Solanum tuberosum HOM05D004635 ORTHO05D005899 9.9e-173 610.9 598 56.5
CSS0019840 Camellia sinensis var. sinensis HOM05D004635 ORTHO05D005899 2.2e-172 609.8 631 54.2
TPR.G12861 Trifolium pratense HOM05D004635 ORTHO05D005899 3.8e-172 609.0 634 53.9
CAN.G792.84 Capsicum annuum HOM05D004635 ORTHO05D005899 4.9e-172 608.6 597 56.6
Nitab4.5_0003907g0020 Nicotiana tabacum HOM05D004635 ORTHO05D005899 6.4e-172 608.2 597 56.6
Phvul.002G288000 Phaseolus vulgaris HOM05D004635 ORTHO05D005899 8.4e-172 607.8 634 53.9
arahy.Tifrunner.gnm1.ann1.MF5MQE Arachis hypogaea HOM05D004635 ORTHO05D005899 1.9e-171 606.7 599 56.6
Hund11485 Selenicereus undatus HOM05D004635 ORTHO05D005899 3.2e-171 605.9 624 56.1
AUR62017259 Chenopodium quinoa HOM05D004635 ORTHO05D005899 4.2e-171 605.5 600 55.8
GSVIVG01019776001 Vitis vinifera HOM05D004635 ORTHO05D005899 4.2e-171 605.5 577 57.4
Nitab4.5_0004836g0050 Nicotiana tabacum HOM05D004635 ORTHO05D005899 5.5e-171 605.1 609 55.8
VMungo0251G2718 Vigna mungo HOM05D004635 ORTHO05D005899 5.5e-171 605.1 635 53.4
Glyma.08G013300 Glycine max HOM05D004635 ORTHO05D005899 3.5e-170 602.4 637 54.0
MBI18_g19087_MAGBIO Magnolia biondii HOM05D004635 ORTHO05D005899 7.9e-170 601.3 644 54.0
Psat7g034520 Pisum sativum HOM05D004635 ORTHO05D005899 1.8e-169 600.1 579 57.3
Lalb_Chr05g0224871 Lupinus albus HOM05D004635 ORTHO05D005899 2.3e-169 599.7 617 54.3
EL10Ac5g12781 Beta vulgaris HOM05D004635 ORTHO05D005899 3.9e-169 599.0 607 55.8
RcHm_v2.0_Chr7g0179141 Rosa chinensis HOM05D004635 ORTHO05D005899 6.7e-169 598.2 578 57.1
EL10Ac1g00317 Beta vulgaris HOM05D004635 ORTHO05D005899 1.5e-168 597.0 611 55.3
Ca_17544_v3 Cicer arietinum L. HOM05D004635 ORTHO05D005899 1.5e-168 597.0 627 54.4
Solyc08g007990.3 Solanum lycopersicum HOM05D004635 ORTHO05D005899 3.3e-168 595.9 598 56.0
AUR62010616 Chenopodium quinoa HOM05D004635 ORTHO05D005899 5.6e-168 595.1 609 54.7
Sopen08g003860 Solanum pennellii HOM05D004635 ORTHO05D005899 9.6e-168 594.3 595 55.3
Nn5g27546 Nelumbo nucifera HOM05D004635 ORTHO05D005899 1.3e-167 594.0 632 53.6
SGA_v2.0_scaffold146G36254 Striga asiatica HOM05D004635 ORTHO05D005899 6.2e-167 591.7 614 54.7
PGSC0003DMG400005819 Solanum tuberosum HOM05D004635 ORTHO05D005899 1.2e-165 587.4 597 54.8
Sed0015372 Sechium edule HOM05D004635 ORTHO05D005899 2.0e-165 586.6 590 55.1
TAR636G1354 Trochodendron aralioides HOM05D004635 ORTHO05D005899 5.8e-165 585.1 639 53.4
Nn1g02763 Nelumbo nucifera HOM05D004635 ORTHO05D005899 6.5e-164 581.6 629 52.9
TAR629G3080 Trochodendron aralioides HOM05D004635 ORTHO05D005899 1.1e-163 580.9 622 54.0
FAN08G3353 Fragaria x ananassa HOM05D004635 ORTHO05D005899 9.6e-160 567.8 546 57.3
Carub.0004s0410 Capsella rubella HOM05D004635 ORTHO05D005899 1.3e-159 567.4 479 66.2
MSTRG.13840 Avicennia marina HOM05D004635 ORTHO05D005899 1.6e-159 567.0 634 51.9
SalBow6G1328 Salvia bowleyana HOM05D004635 ORTHO05D005899 3.7e-159 565.8 624 51.4
Sed0018462 Sechium edule HOM05D004635 ORTHO05D005899 7.6e-157 558.1 505 59.8
C06p19650 Brassica napus HOM05D004635 ORTHO05D005899 1.3e-156 557.4 392 78.1
ATR0064G111 Amborella trichopoda HOM05D004635 ORTHO05D005899 9.7e-152 541.2 622 51.0
Os02g0114700 Oryza sativa ssp. japonica HOM05D004635 ORTHO05D005899 8.2e-143 511.5 567 51.3
Oeu011058.1 Olea europaea HOM05D004635 ORTHO05D005899 6.9e-142 508.4 594 49.8
CiPaw.11G137400 Carya illinoinensis HOM05D004635 ORTHO05D005899 1.5e-141 507.3 526 54.6
HPP92_020857 Vanilla planifolia HOM05D004635 ORTHO05D005899 3.4e-141 506.1 635 46.1
Zm00001eb209610 Zea mays HOM05D004635 ORTHO05D005899 9.7e-136 488.0 575 49.9
CDE06G0591 Ceratophyllum demersum HOM05D004635 ORTHO05D005899 1.6e-133 480.7 492 55.3
Glyma.05G206400 Glycine max HOM05D004635 ORTHO05D005899 2.5e-131 473.4 549 51.4
unitig_37.g12250 Utricularia gibba HOM05D004635 ORTHO05D005899 3.6e-130 469.5 567 48.9
SEGI_23350 Sequoiadendron giganteum HOM05D004635 ORTHO05D005899 7.5e-128 461.8 674 43.6
BolC6t37157H Brassica oleracea HOM05D004635 ORTHO05D005899 3.6e-122 443.0 265 87.2
Zm00001eb229850 Zea mays HOM05D004635 ORTHO05D005899 8.3e-111 405.2 498 49.2
Actinidia14552 Actinidia chinensis HOM05D004635 ORTHO05D005899 2.4e-110 403.7 636 43.4
BcaC04g18687 Brassica carinata HOM05D004635 ORTHO05D005899 5.7e-104 382.5 440 55.7
BolC9t58686H Brassica oleracea HOM05D004635 ORTHO05D005899 7.5e-104 382.1 352 65.6
C09p58220 Brassica napus HOM05D000111 ORTHO05D000134 9.8e-104 381.7 439 57.6
Sc01g0009470 Simmondsia chinensis HOM05D004635 ORTHO05D005899 1.2e-101 374.8 483 49.7
BolC6t37158H Brassica oleracea HOM05D004635 ORTHO05D005899 2.0e-101 374.0 241 83.4
RcHm_v2.0_Chr2g0099081 Rosa chinensis HOM05D004635 ORTHO05D005899 3.5e-101 373.2 505 46.1
Pp3c2_34320 Physcomitrium patens HOM05D004635 ORTHO05D005899 1.3e-100 371.3 644 39.4
Migut.A00784 Erythranthe guttata HOM05D004635 ORTHO05D005899 4.4e-96 356.3 401 52.1
RcHm_v2.0_Chr7g0211921 Rosa chinensis HOM05D004635 ORTHO05D005899 5.8e-96 355.9 398 53.3
AagrBONN_evm.TU.Sc2ySwM_362.355 Anthoceros agrestis HOM05D004635 ORTHO05D005899 1.8e-89 334.3 643 38.6
SMO171G0086 Selaginella moellendorffii HOM05D004635 ORTHO05D005899 1.8e-89 334.3 566 39.2
Dinv37658 Davidia involucrata HOM05D004635 ORTHO05D005899 1.6e-85 321.2 277 60.6
BcaC08g44514 Brassica carinata HOM05D004635 ORTHO05D005899 4.9e-79 299.7 146 96.6
C06p19660 Brassica napus HOM05D004635 ORTHO05D005899 7.6e-72 275.8 156 91.7
CDE05G1698 Ceratophyllum demersum HOM05D004635 ORTHO05D005899 7.1e-70 269.2 414 42.3
FAN26G1714 Fragaria x ananassa HOM05D004635 ORTHO05D005899 7.1e-70 269.2 356 47.8
FAN28G2416 Fragaria x ananassa HOM05D004635 ORTHO05D005899 7.1e-70 269.2 356 47.8
BcaC08g44517 Brassica carinata HOM05D004635 ORTHO05D005899 2.1e-69 267.7 232 70.3
Mapoly0033s0014 Marchantia polymorpha HOM05D004635 ORTHO05D005899 8.7e-68 262.3 536 35.8
Dinv37657 Davidia involucrata HOM05D004635 ORTHO05D005899 1.4e-65 255.0 238 56.3
CBR_g50931 Chara braunii HOM05D004635 ORTHO05D005899 4.5e-56 223.4 770 27.1
RcHm_v2.0_Chr7g0211961 Rosa chinensis HOM05D004635 ORTHO05D005899 3.2e-54 217.2 206 55.8
PRCOL_00006831 Prasinoderma coloniale HOM05D004635 ORTHO05D005899 8.4e-47 192.6 554 30.1
MCO14G249 Micromonas commoda HOM05D004635 ORTHO05D005899 1.8e-41 174.9 508 29.7
Cre01.g031750 Chlamydomonas reinhardtii HOM05D004635 ORTHO05D005899 2.7e-37 161.0 547 31.4
QL12p018319 Quercus lobata HOM05D004635 ORTHO05D005899 1.0e-36 159.1 307 37.1
VMungo1127G2192 Vigna mungo HOM05D004635 ORTHO05D005899 5.3e-33 146.7 182 46.2
AL4G15290 Arabidopsis lyrata HOM05D004635 ORTHO05D079484 1.3e-18 99.0 91 60.4
EL10Ac8g19215 Beta vulgaris HOM05D000238 ORTHO05D001043 2.2e-18 98.2 83 56.6
Lj2C188G12 Lonicera japonica HOM05D004635 ORTHO05D005899 3.7e-18 97.4 272 31.6
Solyc12g015770.3 Solanum lycopersicum HOM05D000074 ORTHO05D001262 3.7e-18 97.4 60 76.7
EL10Ac5g10794 Beta vulgaris HOM05D004635 ORTHO05D005899 1.3e-07 62.4 103 42.7
Sopen12g007660 Solanum pennellii HOM05D000006 ORTHO05D000695 6.5e-07 60.1 41 70.7
arahy.Tifrunner.gnm1.ann1.CCN99U Arachis hypogaea HOM05D004635 ORTHO05D085572 4.2e-06 57.4 43 62.8
Lj2C188G13 Lonicera japonica HOM05D004635 ORTHO05D005899 7.2e-06 56.6 54 51.9


User provided reference genes

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