Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A04p13360 Brassica napus HOM05D003576 ORTHO05D004124 1.0e-165 586.6 290 100.0
BraA04t16993Z Brassica rapa HOM05D003576 ORTHO05D004124 8.9e-162 573.5 291 98.6
BraA04t16996Z Brassica rapa HOM05D003576 ORTHO05D004124 8.9e-162 573.5 290 97.6
A04p13340 Brassica napus HOM05D003576 ORTHO05D004124 4.4e-161 571.2 290 97.9
A04p13380 Brassica napus HOM05D003576 ORTHO05D004124 4.4e-161 571.2 290 97.9
A04p13410 Brassica napus HOM05D003576 ORTHO05D004124 4.4e-161 571.2 290 97.9
BraA04t16999Z Brassica rapa HOM05D003576 ORTHO05D004124 6.4e-160 567.4 291 97.6
BraA04t16997Z Brassica rapa HOM05D003576 ORTHO05D004124 1.3e-157 559.7 293 96.2
BraA04t16991Z Brassica rapa HOM05D003576 ORTHO05D004124 4.3e-156 554.7 305 92.5
BolC4t26305H Brassica oleracea HOM05D003576 ORTHO05D004124 1.7e-149 532.7 290 91.0
C04p47110 Brassica napus HOM05D003576 ORTHO05D004124 3.6e-131 471.9 251 92.0
BcaB06g27496 Brassica carinata HOM05D003576 ORTHO05D004124 4.2e-127 458.4 293 81.2
BcaB06g27493 Brassica carinata HOM05D003576 ORTHO05D004124 3.5e-126 455.3 293 80.2
BolC4t26310H Brassica oleracea HOM05D003576 ORTHO05D004124 2.5e-124 449.1 239 92.9
A04p13390 Brassica napus HOM05D003576 ORTHO05D004124 5.1e-117 424.9 286 75.5
BolC4t26308H Brassica oleracea HOM05D003576 ORTHO05D004124 6.5e-112 407.9 290 73.4
BcaB06g27487 Brassica carinata HOM05D003576 ORTHO05D004124 1.5e-97 360.1 288 63.9
C04p47100 Brassica napus HOM05D003576 ORTHO05D004124 7.7e-97 357.8 290 63.1
BolC4t26304H Brassica oleracea HOM05D003576 ORTHO05D004124 2.2e-96 356.3 290 63.4
A04p13320 Brassica napus HOM05D003576 ORTHO05D004124 6.5e-96 354.8 290 63.1
BcaC04g19105 Brassica carinata HOM05D003576 ORTHO05D004124 4.6e-94 348.6 306 62.7
Thhalv10014094m.g Eutrema salsugineum HOM05D003576 ORTHO05D004124 1.4e-93 347.1 253 70.8
BcaNung01897 Brassica carinata HOM05D003576 ORTHO05D004124 2.3e-93 346.3 308 62.3
Sp6g30460 Schrenkiella parvula HOM05D003576 ORTHO05D004124 3.0e-93 345.9 267 68.2
BcaNung06333 Brassica carinata HOM05D003576 ORTHO05D004124 6.7e-93 344.7 308 62.0
BcaC04g19106 Brassica carinata HOM05D003576 ORTHO05D004124 8.8e-93 344.4 303 62.4
THA.LOC104827300 Tarenaya hassleriana HOM05D003576 ORTHO05D004124 1.1e-92 344.0 306 60.5
BraA04t16990Z Brassica rapa HOM05D003576 ORTHO05D004124 2.0e-92 343.2 259 66.8
A02p02030 Brassica napus HOM05D003576 ORTHO05D004124 7.4e-92 341.3 254 69.7
C02p06240 Brassica napus HOM05D003576 ORTHO05D004124 7.4e-92 341.3 254 69.7
BolC2t06566H Brassica oleracea HOM05D003576 ORTHO05D004124 7.4e-92 341.3 254 69.7
CARHR199870 Cardamine hirsuta HOM05D003576 ORTHO05D004124 7.4e-92 341.3 252 68.7
BcaB01g05348 Brassica carinata HOM05D003576 ORTHO05D004124 1.7e-91 340.1 307 61.9
BolC9t59197H Brassica oleracea HOM05D003576 ORTHO05D004124 2.2e-91 339.7 303 61.4
C09p63530 Brassica napus HOM05D003576 ORTHO05D004124 6.3e-91 338.2 303 61.4
AL6G24180 Arabidopsis lyrata HOM05D003576 ORTHO05D004124 1.4e-90 337.0 276 64.5
BcaB06g27489 Brassica carinata HOM05D003576 ORTHO05D004124 3.1e-90 335.9 278 66.9
AT5G13570 Arabidopsis thaliana HOM05D003576 ORTHO05D004124 1.0e-88 330.9 277 63.5
A10p24700 Brassica napus HOM05D003576 ORTHO05D004124 1.7e-88 330.1 301 61.1
Carub.0006s1173 Capsella rubella HOM05D003576 ORTHO05D004124 2.2e-88 329.7 276 64.1
BraA10t44533Z Brassica rapa HOM05D003576 ORTHO05D004124 5.0e-88 328.6 301 60.8
arahy.Tifrunner.gnm1.ann1.33B581 Arachis hypogaea HOM05D003576 ORTHO05D004124 8.5e-88 327.8 254 64.2
arahy.Tifrunner.gnm1.ann1.THE0XD Arachis hypogaea HOM05D003576 ORTHO05D004124 8.5e-88 327.8 254 64.2
BcaB06g27491 Brassica carinata HOM05D003576 ORTHO05D004124 1.1e-87 327.4 180 89.4
Lalb_Chr03g0035911 Lupinus albus HOM05D003576 ORTHO05D004124 1.4e-87 327.0 255 63.5
Cfa021515 Carpinus fangiana HOM05D003576 ORTHO05D004124 3.2e-87 325.9 255 65.1
Gohir.A10G205700 Gossypium hirsutum HOM05D003576 ORTHO05D004124 7.2e-87 324.7 240 66.2
Gohir.D10G214000 Gossypium hirsutum HOM05D003576 ORTHO05D004124 7.2e-87 324.7 240 66.2
Gorai.011G239400 Gossypium raimondii HOM05D003576 ORTHO05D004124 7.2e-87 324.7 240 66.2
Thecc.10G074000 Theobroma cacao HOM05D003576 ORTHO05D004124 7.2e-87 324.7 304 56.9
Sp7g03020 Schrenkiella parvula HOM05D003576 ORTHO05D004124 9.4e-87 324.3 289 60.2
Atru.chr12.780 Acer truncatum HOM05D003576 ORTHO05D004124 1.6e-86 323.6 255 64.3
BcaNung01144 Brassica carinata HOM05D003576 ORTHO05D004124 1.6e-86 323.6 255 67.8
Atru.chr12.756 Acer truncatum HOM05D003576 ORTHO05D004124 2.1e-86 323.2 255 64.3
Lj2g0011631 Lotus japonicus HOM05D003576 ORTHO05D004124 3.6e-86 322.4 304 55.3
QL08p055786 Quercus lobata HOM05D003576 ORTHO05D004124 6.1e-86 321.6 255 63.5
Glyma.02G074100 Glycine max HOM05D003576 ORTHO05D004124 7.9e-86 321.2 254 63.0
Phvul.004G083500 Phaseolus vulgaris HOM05D003576 ORTHO05D004124 7.9e-86 321.2 285 58.2
CANSAT56G0320 Cannabis sativa HOM05D003576 ORTHO05D004124 1.0e-85 320.9 305 55.1
vmacro07071 Vaccinium macrocarpon HOM05D003576 ORTHO05D004124 1.0e-85 320.9 241 65.1
CSS0018972 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 1.4e-85 320.5 254 61.8
CSS0040774 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 1.4e-85 320.5 254 61.8
DCAR_019104 Daucus carota HOM05D003576 ORTHO05D004124 1.4e-85 320.5 241 65.1
Lalb_Chr01g0010001 Lupinus albus HOM05D003576 ORTHO05D004124 1.4e-85 320.5 304 55.6
Ciclev10032124m.g Citrus clementina HOM05D003576 ORTHO05D004124 2.3e-85 319.7 310 56.8
Rhsim03G0120500 Rhododendron simsii HOM05D003576 ORTHO05D004124 2.3e-85 319.7 241 64.7
Aa31LG11G7770 Aethionema arabicum HOM05D003576 ORTHO05D004124 3.0e-85 319.3 350 53.4
THA.LOC104809882 Tarenaya hassleriana HOM05D003576 ORTHO05D004124 3.9e-85 318.9 254 65.4
TPR.G36712 Trifolium pratense HOM05D003576 ORTHO05D004124 6.7e-85 318.2 282 57.8
Lj3A882G53 Lonicera japonica HOM05D003576 ORTHO05D004124 8.8e-85 317.8 274 58.0
Glyma.16G155600 Glycine max HOM05D003576 ORTHO05D004124 1.1e-84 317.4 256 62.9
Actinidia38283 Actinidia chinensis HOM05D003576 ORTHO05D004124 1.5e-84 317.0 240 65.4
MD01G1108400 Malus domestica HOM05D003576 ORTHO05D004124 1.5e-84 317.0 257 62.3
Manes.07G100300 Manihot esculenta HOM05D003576 ORTHO05D004124 1.5e-84 317.0 276 59.1
Potri.008G039500 Populus trichocarpa HOM05D003576 ORTHO05D004124 3.3e-84 315.8 265 60.4
Migut.F01985 Erythranthe guttata HOM05D003576 ORTHO05D004124 4.4e-84 315.5 269 60.6
Hma1.2p1_0382F.1_g140100 Hydrangea macrophylla HOM05D003576 ORTHO05D004124 4.4e-84 315.5 241 63.9
Prupe.2G213500 Prunus persica HOM05D003576 ORTHO05D004124 4.4e-84 315.5 241 64.3
Eucgr.J01085 Eucalyptus grandis HOM05D003576 ORTHO05D004124 7.4e-84 314.7 253 62.5
GSVIVG01016273001 Vitis vinifera HOM05D003576 ORTHO05D004124 7.4e-84 314.7 267 61.0
MSTRG.374 Avicennia marina HOM05D003576 ORTHO05D004124 9.7e-84 314.3 275 60.0
CiPaw.02G173900 Carya illinoinensis HOM05D003576 ORTHO05D004124 9.7e-84 314.3 253 62.8
FvH4_2g18840 Fragaria vesca HOM05D003576 ORTHO05D004124 9.7e-84 314.3 239 64.4
HanXRQChr15g0496951 Helianthus annuus HOM05D003576 ORTHO05D004124 9.7e-84 314.3 241 63.5
Solyc05g056110.3 Solanum lycopersicum HOM05D003576 ORTHO05D004124 9.7e-84 314.3 241 61.4
Sopen05g034520 Solanum pennellii HOM05D003576 ORTHO05D004124 9.7e-84 314.3 241 61.4
Dinv31323 Davidia involucrata HOM05D003576 ORTHO05D004124 1.3e-83 313.9 244 65.2
TAR633G2490 Trochodendron aralioides HOM05D003576 ORTHO05D004124 1.3e-83 313.9 303 54.1
Sabra08G0027100 Salix brachista HOM05D003576 ORTHO05D004124 1.7e-83 313.5 255 62.0
Medtr6g033535 Medicago truncatula HOM05D003576 ORTHO05D004124 2.2e-83 313.2 289 55.4
RcHm_v2.0_Chr6g0284661 Rosa chinensis HOM05D003576 ORTHO05D004124 2.2e-83 313.2 239 64.0
MD07G1174600 Malus domestica HOM05D003576 ORTHO05D004124 2.8e-83 312.8 241 63.1
TWI15G0705 Tripterygium wilfordii HOM05D003576 ORTHO05D004124 3.7e-83 312.4 303 56.4
PGR142G1591 Punica granatum HOM05D003576 ORTHO05D004124 4.8e-83 312.0 305 54.4
CAN.G694.86 Capsicum annuum HOM05D003576 ORTHO05D004124 6.3e-83 311.6 236 64.0
Lsat_1_v5_gn_9_69180 Lactuca sativa HOM05D003576 ORTHO05D004124 8.2e-83 311.2 239 63.2
Sc20g0001840 Simmondsia chinensis HOM05D003576 ORTHO05D004124 8.2e-83 311.2 236 63.6
Dinv36441 Davidia involucrata HOM05D003576 ORTHO05D004124 1.4e-82 310.5 271 58.3
Nitab4.5_0000476g0030 Nicotiana tabacum HOM05D003576 ORTHO05D004124 2.4e-82 309.7 241 61.4
Nitab4.5_0009985g0010 Nicotiana tabacum HOM05D003576 ORTHO05D004124 4.1e-82 308.9 241 61.4
Cc02_g11340 Coffea canephora HOM05D003576 ORTHO05D004124 5.3e-82 308.5 275 57.8
ClCG05G021030 Citrullus lanatus HOM05D003576 ORTHO05D004124 2.0e-81 306.6 296 54.7
CsaV3_6G036430 Cucumis sativus L. HOM05D003576 ORTHO05D004124 2.0e-81 306.6 240 62.1
ClCG08G007510 Citrullus lanatus HOM05D003576 ORTHO05D004124 2.6e-81 306.2 241 61.8
Sabra10G0172200 Salix brachista HOM05D003576 ORTHO05D004124 2.6e-81 306.2 303 55.1
ECA232G3526 Erigeron canadensis HOM05D003576 ORTHO05D004124 3.5e-81 305.8 239 62.3
Nn2g13102 Nelumbo nucifera HOM05D003576 ORTHO05D004124 3.5e-81 305.8 270 54.8
EL10Ac2g03301 Beta vulgaris HOM05D003576 ORTHO05D004124 4.5e-81 305.4 241 61.0
CsaV3_5G036280 Cucumis sativus L. HOM05D003576 ORTHO05D004124 4.5e-81 305.4 241 61.8
Potri.010G222800 Populus trichocarpa HOM05D003576 ORTHO05D004124 5.9e-81 305.1 303 55.1
PSO063G6153 Papaver somniferum HOM05D003576 ORTHO05D004124 1.3e-80 303.9 237 60.8
ECA238G1405 Erigeron canadensis HOM05D003576 ORTHO05D004124 2.2e-80 303.1 240 61.2
Sed0006763 Sechium edule HOM05D003576 ORTHO05D004124 2.2e-80 303.1 241 60.6
Sed0008938 Sechium edule HOM05D003576 ORTHO05D004124 2.2e-80 303.1 299 53.8
CDE04G0074 Ceratophyllum demersum HOM05D003576 ORTHO05D004124 6.5e-80 301.6 268 56.0
AUR62018250 Chenopodium quinoa HOM05D003576 ORTHO05D004124 6.5e-80 301.6 244 59.8
BcaC04g19104 Brassica carinata HOM05D003576 ORTHO05D004124 1.1e-79 300.8 300 58.0
PSO339G2752 Papaver somniferum HOM05D003576 ORTHO05D004124 1.1e-79 300.8 233 61.4
PSO384G2156 Papaver somniferum HOM05D003576 ORTHO05D004124 1.5e-79 300.4 233 60.9
Migut.F01761 Erythranthe guttata HOM05D003576 ORTHO05D004124 1.9e-79 300.1 274 58.0
FAN15G0532 Fragaria x ananassa HOM05D003576 ORTHO05D004124 2.1e-78 296.6 250 60.4
Aqoxy1G02388 Aquilegia oxysepala HOM05D003576 ORTHO05D004124 1.0e-77 294.3 253 57.3
Zm00001eb273430 Zea mays HOM05D003576 ORTHO05D004124 1.8e-77 293.5 246 56.5
SalBow3G2401 Salvia bowleyana HOM05D003576 ORTHO05D004124 4.0e-77 292.4 301 52.5
Os02g0805900 Oryza sativa ssp. japonica HOM05D003576 ORTHO05D004124 5.2e-77 292.0 237 57.4
ATR0048G008 Amborella trichopoda HOM05D003576 ORTHO05D004124 6.7e-77 291.6 250 58.0
CiPaw.01G272700 Carya illinoinensis HOM05D003576 ORTHO05D004124 2.0e-76 290.0 247 60.3
FAN24G3530 Fragaria x ananassa HOM05D003576 ORTHO05D004124 5.7e-76 288.5 239 61.1
AUR62037754 Chenopodium quinoa HOM05D003576 ORTHO05D004124 7.5e-76 288.1 268 54.5
Mapoly0154s0022 Marchantia polymorpha HOM05D003576 ORTHO05D004124 1.3e-75 287.3 238 57.1
Actinidia06773 Actinidia chinensis HOM05D003576 ORTHO05D004124 1.7e-75 287.0 203 67.5
unitig_699.g19224 Utricularia gibba HOM05D003576 ORTHO05D004124 2.2e-75 286.6 236 61.9
HPP92_020748 Vanilla planifolia HOM05D003576 ORTHO05D004124 2.2e-75 286.6 252 56.7
MELO3C012428.2 Cucumis melo HOM05D003576 ORTHO05D004124 6.3e-75 285.0 226 61.9
Peaxi162Scf01175g00019 Petunia axillaris HOM05D003576 ORTHO05D004124 1.4e-74 283.9 241 58.5
PSO339G5183 Papaver somniferum HOM05D003576 ORTHO05D004124 4.1e-74 282.3 220 60.9
SHI19520 Sapria himalayana HOM05D003576 ORTHO05D004124 1.9e-71 273.5 290 50.3
Pp3c1_22690 Physcomitrium patens HOM05D003576 ORTHO05D004124 4.2e-71 272.3 268 48.1
PGR044G0669 Punica granatum HOM05D003576 ORTHO05D004124 4.2e-71 272.3 236 57.2
AagrBONN_evm.TU.Sc2ySwM_228.4941 Anthoceros agrestis HOM05D003576 ORTHO05D004124 1.2e-70 270.8 236 53.4
SMO356G0089 Selaginella moellendorffii HOM05D003576 ORTHO05D004124 4.7e-70 268.9 237 53.2
COL.COLO4_23659 Corchorus olitorius HOM05D003576 ORTHO05D004124 3.0e-69 266.2 227 59.5
Pp3c10_5620 Physcomitrium patens HOM05D003576 ORTHO05D004124 3.0e-69 266.2 253 51.0
Pp3c2_16830 Physcomitrium patens HOM05D003576 ORTHO05D004124 4.4e-68 262.3 255 48.2
MELO3C019797.2 Cucumis melo HOM05D003576 ORTHO05D004124 7.5e-68 261.5 192 64.6
Sp3g29060 Schrenkiella parvula HOM05D003576 ORTHO05D004124 3.7e-67 259.2 241 58.9
SGA_v2.0_scaffold100G29594 Striga asiatica HOM05D003576 ORTHO05D004124 7.0e-66 255.0 268 53.7
Duzib114G0196 Durio zibethinus HOM05D003576 ORTHO05D004124 2.0e-65 253.4 254 54.3
CBR_g38931 Chara braunii HOM05D003576 ORTHO05D004124 2.2e-64 250.0 238 50.8
Cpa.g.sc53.83 Carica papaya HOM05D003576 ORTHO05D004124 8.0e-62 241.5 296 47.0
Haze_16891 Corylus avellana HOM05D003576 ORTHO05D004124 6.8e-61 238.4 277 48.7
Ah.10g032640 Amaranthus hybridus HOM05D003576 ORTHO05D004124 2.2e-59 233.4 236 51.3
TAR636G0323 Trochodendron aralioides HOM05D003576 ORTHO05D004124 7.0e-58 228.4 196 57.7
CDE03G0119 Ceratophyllum demersum HOM05D003576 ORTHO05D004124 6.6e-48 195.3 132 67.4
Zm00001eb290030 Zea mays HOM05D003576 ORTHO05D004124 1.2e-46 191.0 138 59.4
C03p07100 Brassica napus HOM05D002836 ORTHO05D003107 1.8e-45 187.2 301 42.9
Zm00001eb366000 Zea mays HOM05D003576 ORTHO05D004124 5.2e-45 185.7 138 58.7
Cfa023847 Carpinus fangiana HOM05D003576 ORTHO05D004124 8.9e-45 184.9 248 42.7
BolC3t13209H Brassica oleracea HOM05D003576 ORTHO05D004124 1.2e-44 184.5 310 42.9
MCO14G142 Micromonas commoda HOM05D003576 ORTHO05D004124 2.0e-44 183.7 234 41.5
Psat1g000080 Pisum sativum HOM05D003576 ORTHO05D004124 9.8e-44 181.4 214 47.7
CBR_g39890 Chara braunii HOM05D003576 ORTHO05D004124 3.7e-43 179.5 168 50.0
FAN15G1487 Fragaria x ananassa HOM05D003576 ORTHO05D004124 8.3e-43 178.3 181 52.5
Ca_27771_v3 Cicer arietinum L. HOM05D003576 ORTHO05D004124 7.0e-42 175.3 198 51.0
CDE03G0459 Ceratophyllum demersum HOM05D003576 ORTHO05D004124 1.6e-41 174.1 156 56.4
PRCOL_00003742 Prasinoderma coloniale HOM05D003576 ORTHO05D004124 2.7e-41 173.3 200 44.5
Ah.16g106400 Amaranthus hybridus HOM05D003576 ORTHO05D004124 4.6e-41 172.6 249 43.4
C04p47130 Brassica napus HOM05D003576 ORTHO05D004124 5.0e-40 169.1 92 90.2
Sp7g03350 Schrenkiella parvula HOM05D003576 ORTHO05D004124 1.1e-39 167.9 141 61.7
Cre07.g344850 Chlamydomonas reinhardtii HOM05D003576 ORTHO05D004124 3.3e-39 166.4 248 38.3
SEGI_06233 Sequoiadendron giganteum HOM05D003576 ORTHO05D004124 2.8e-38 163.3 222 41.9
Sp7g01550 Schrenkiella parvula HOM05D003576 ORTHO05D004124 6.8e-37 158.7 227 42.3
CSS0030842 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 1.2e-30 137.9 158 50.0
Ca_07562_v3 Cicer arietinum L. HOM05D003576 ORTHO05D004124 3.1e-29 133.3 172 45.3
Psat1g098680 Pisum sativum HOM05D003576 ORTHO05D004124 2.6e-28 130.2 145 48.3
Oeu017646.1 Olea europaea HOM05D003576 ORTHO05D004124 9.9e-28 128.3 117 59.8
CSS0009257 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 1.4e-26 124.4 85 72.9
Zm00001eb305720 Zea mays HOM05D003576 ORTHO05D004124 1.7e-24 117.5 77 62.3
AL4G23990 Arabidopsis lyrata HOM05D003576 ORTHO05D004124 3.0e-24 116.7 123 52.8
TAR636G2201 Trochodendron aralioides HOM05D003576 ORTHO05D004124 7.6e-20 102.1 104 48.1
CDE03G0152 Ceratophyllum demersum HOM05D003576 ORTHO05D004124 1.6e-14 84.3 112 45.5
CSS0032612 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 1.7e-11 74.3 52 71.2
CSS0050114 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 1.7e-11 74.3 52 71.2
CSS0046774 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 3.8e-11 73.2 52 69.2
CSS0033760 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 1.1e-10 71.6 52 67.3
Psat1g098640 Pisum sativum HOM05D003576 ORTHO05D004124 4.6e-09 66.2 47 61.7


User provided reference genes

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