Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A04p13340 Brassica napus HOM05D003576 ORTHO05D004124 2.4e-167 592.0 290 100.0
A04p13380 Brassica napus HOM05D003576 ORTHO05D004124 2.4e-167 592.0 290 100.0
A04p13410 Brassica napus HOM05D003576 ORTHO05D004124 2.4e-167 592.0 290 100.0
BraA04t16993Z Brassica rapa HOM05D003576 ORTHO05D004124 2.8e-163 578.6 291 98.6
BraA04t16996Z Brassica rapa HOM05D003576 ORTHO05D004124 2.8e-163 578.6 290 97.6
A04p13360 Brassica napus HOM05D003576 ORTHO05D004124 8.9e-162 573.5 290 97.9
BraA04t16999Z Brassica rapa HOM05D003576 ORTHO05D004124 3.4e-161 571.6 291 97.3
BraA04t16997Z Brassica rapa HOM05D003576 ORTHO05D004124 7.0e-159 563.9 293 95.9
BraA04t16991Z Brassica rapa HOM05D003576 ORTHO05D004124 1.3e-157 559.7 305 92.5
BolC4t26305H Brassica oleracea HOM05D003576 ORTHO05D004124 3.2e-151 538.5 290 91.4
C04p47110 Brassica napus HOM05D003576 ORTHO05D004124 6.6e-133 477.6 251 92.4
BolC4t26310H Brassica oleracea HOM05D003576 ORTHO05D004124 4.6e-126 454.9 239 93.3
BcaB06g27496 Brassica carinata HOM05D003576 ORTHO05D004124 1.1e-124 450.3 293 79.9
BcaB06g27493 Brassica carinata HOM05D003576 ORTHO05D004124 9.6e-124 447.2 293 78.8
A04p13390 Brassica napus HOM05D003576 ORTHO05D004124 4.8e-115 418.3 286 74.5
BolC4t26308H Brassica oleracea HOM05D003576 ORTHO05D004124 1.3e-112 410.2 290 73.4
BcaB06g27487 Brassica carinata HOM05D003576 ORTHO05D004124 1.9e-95 353.2 288 62.8
C04p47100 Brassica napus HOM05D003576 ORTHO05D004124 9.4e-95 350.9 290 62.1
BolC4t26304H Brassica oleracea HOM05D003576 ORTHO05D004124 2.7e-94 349.4 290 62.4
A04p13320 Brassica napus HOM05D003576 ORTHO05D004124 7.9e-94 347.8 290 62.1
BcaC04g19105 Brassica carinata HOM05D003576 ORTHO05D004124 4.4e-92 342.0 306 61.8
Thhalv10014094m.g Eutrema salsugineum HOM05D003576 ORTHO05D004124 1.3e-91 340.5 253 69.6
BcaNung01897 Brassica carinata HOM05D003576 ORTHO05D004124 2.2e-91 339.7 308 61.4
Sp6g30460 Schrenkiella parvula HOM05D003576 ORTHO05D004124 3.7e-91 339.0 267 67.0
THA.LOC104827300 Tarenaya hassleriana HOM05D003576 ORTHO05D004124 4.8e-91 338.6 306 59.5
BcaNung06333 Brassica carinata HOM05D003576 ORTHO05D004124 6.3e-91 338.2 308 61.0
BcaC04g19106 Brassica carinata HOM05D003576 ORTHO05D004124 1.1e-90 337.4 303 61.4
BraA04t16990Z Brassica rapa HOM05D003576 ORTHO05D004124 1.8e-90 336.7 259 65.6
A02p02030 Brassica napus HOM05D003576 ORTHO05D004124 6.9e-90 334.7 254 68.5
C02p06240 Brassica napus HOM05D003576 ORTHO05D004124 6.9e-90 334.7 254 68.5
BolC2t06566H Brassica oleracea HOM05D003576 ORTHO05D004124 6.9e-90 334.7 254 68.5
CARHR199870 Cardamine hirsuta HOM05D003576 ORTHO05D004124 6.9e-90 334.7 252 67.5
BcaB01g05348 Brassica carinata HOM05D003576 ORTHO05D004124 1.5e-89 333.6 307 60.9
BolC9t59197H Brassica oleracea HOM05D003576 ORTHO05D004124 2.6e-89 332.8 303 60.4
C09p63530 Brassica napus HOM05D003576 ORTHO05D004124 7.7e-89 331.3 303 60.4
AL6G24180 Arabidopsis lyrata HOM05D003576 ORTHO05D004124 1.3e-88 330.5 276 63.4
Thecc.10G074000 Theobroma cacao HOM05D003576 ORTHO05D004124 2.2e-88 329.7 304 57.2
BcaB06g27489 Brassica carinata HOM05D003576 ORTHO05D004124 2.9e-88 329.3 278 65.8
AT5G13570 Arabidopsis thaliana HOM05D003576 ORTHO05D004124 1.2e-86 323.9 277 62.5
arahy.Tifrunner.gnm1.ann1.33B581 Arachis hypogaea HOM05D003576 ORTHO05D004124 1.2e-86 323.9 254 63.4
arahy.Tifrunner.gnm1.ann1.THE0XD Arachis hypogaea HOM05D003576 ORTHO05D004124 1.2e-86 323.9 254 63.4
A10p24700 Brassica napus HOM05D003576 ORTHO05D004124 1.6e-86 323.6 301 60.1
Carub.0006s1173 Capsella rubella HOM05D003576 ORTHO05D004124 2.1e-86 323.2 276 63.0
Atru.chr12.780 Acer truncatum HOM05D003576 ORTHO05D004124 3.6e-86 322.4 255 64.3
Atru.chr12.756 Acer truncatum HOM05D003576 ORTHO05D004124 4.7e-86 322.0 255 64.3
BraA10t44533Z Brassica rapa HOM05D003576 ORTHO05D004124 4.7e-86 322.0 301 59.8
Gohir.A10G205700 Gossypium hirsutum HOM05D003576 ORTHO05D004124 4.7e-86 322.0 240 65.8
Gohir.D10G214000 Gossypium hirsutum HOM05D003576 ORTHO05D004124 4.7e-86 322.0 240 65.8
Gorai.011G239400 Gossypium raimondii HOM05D003576 ORTHO05D004124 4.7e-86 322.0 240 65.8
Lalb_Chr03g0035911 Lupinus albus HOM05D003576 ORTHO05D004124 6.1e-86 321.6 255 62.4
Sp7g03020 Schrenkiella parvula HOM05D003576 ORTHO05D004124 1.0e-85 320.9 289 59.5
Cfa021515 Carpinus fangiana HOM05D003576 ORTHO05D004124 1.4e-85 320.5 255 63.9
BcaB06g27491 Brassica carinata HOM05D003576 ORTHO05D004124 3.0e-85 319.3 180 87.2
Lj2g0011631 Lotus japonicus HOM05D003576 ORTHO05D004124 3.0e-85 319.3 304 54.9
Phvul.004G083500 Phaseolus vulgaris HOM05D003576 ORTHO05D004124 5.2e-85 318.5 285 57.9
CSS0018972 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 8.8e-85 317.8 254 61.4
CSS0040774 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 8.8e-85 317.8 254 61.4
vmacro07071 Vaccinium macrocarpon HOM05D003576 ORTHO05D004124 8.8e-85 317.8 241 64.7
DCAR_019104 Daucus carota HOM05D003576 ORTHO05D004124 1.1e-84 317.4 241 64.7
BcaNung01144 Brassica carinata HOM05D003576 ORTHO05D004124 1.5e-84 317.0 255 66.7
Rhsim03G0120500 Rhododendron simsii HOM05D003576 ORTHO05D004124 2.0e-84 316.6 241 64.3
QL08p055786 Quercus lobata HOM05D003576 ORTHO05D004124 2.6e-84 316.2 255 62.4
Glyma.02G074100 Glycine max HOM05D003576 ORTHO05D004124 3.3e-84 315.8 254 61.8
CANSAT56G0320 Cannabis sativa HOM05D003576 ORTHO05D004124 4.4e-84 315.5 305 54.1
Manes.07G100300 Manihot esculenta HOM05D003576 ORTHO05D004124 4.4e-84 315.5 276 59.1
Lalb_Chr01g0010001 Lupinus albus HOM05D003576 ORTHO05D004124 5.7e-84 315.1 304 54.6
Glyma.16G155600 Glycine max HOM05D003576 ORTHO05D004124 7.4e-84 314.7 256 62.5
Lj3A882G53 Lonicera japonica HOM05D003576 ORTHO05D004124 7.4e-84 314.7 274 57.7
Actinidia38283 Actinidia chinensis HOM05D003576 ORTHO05D004124 9.7e-84 314.3 240 65.0
Ciclev10032124m.g Citrus clementina HOM05D003576 ORTHO05D004124 9.7e-84 314.3 310 55.8
Potri.008G039500 Populus trichocarpa HOM05D003576 ORTHO05D004124 9.7e-84 314.3 265 60.4
TPR.G36712 Trifolium pratense HOM05D003576 ORTHO05D004124 9.7e-84 314.3 282 57.1
Aa31LG11G7770 Aethionema arabicum HOM05D003576 ORTHO05D004124 1.3e-83 313.9 350 52.6
MD01G1108400 Malus domestica HOM05D003576 ORTHO05D004124 2.2e-83 313.2 257 61.5
THA.LOC104809882 Tarenaya hassleriana HOM05D003576 ORTHO05D004124 2.2e-83 313.2 254 64.2
GSVIVG01016273001 Vitis vinifera HOM05D003576 ORTHO05D004124 2.2e-83 313.2 267 61.0
Migut.F01985 Erythranthe guttata HOM05D003576 ORTHO05D004124 2.8e-83 312.8 269 60.2
Hma1.2p1_0382F.1_g140100 Hydrangea macrophylla HOM05D003576 ORTHO05D004124 3.7e-83 312.4 241 63.5
Eucgr.J01085 Eucalyptus grandis HOM05D003576 ORTHO05D004124 4.8e-83 312.0 253 62.1
Sabra08G0027100 Salix brachista HOM05D003576 ORTHO05D004124 4.8e-83 312.0 255 62.0
CiPaw.02G173900 Carya illinoinensis HOM05D003576 ORTHO05D004124 8.2e-83 311.2 253 62.5
Dinv31323 Davidia involucrata HOM05D003576 ORTHO05D004124 8.2e-83 311.2 244 64.8
HanXRQChr15g0496951 Helianthus annuus HOM05D003576 ORTHO05D004124 8.2e-83 311.2 241 63.1
Solyc05g056110.3 Solanum lycopersicum HOM05D003576 ORTHO05D004124 1.8e-82 310.1 241 60.6
Sopen05g034520 Solanum pennellii HOM05D003576 ORTHO05D004124 1.8e-82 310.1 241 60.6
Prupe.2G213500 Prunus persica HOM05D003576 ORTHO05D004124 2.4e-82 309.7 241 63.1
PGR142G1591 Punica granatum HOM05D003576 ORTHO05D004124 3.1e-82 309.3 305 54.1
TWI15G0705 Tripterygium wilfordii HOM05D003576 ORTHO05D004124 3.1e-82 309.3 303 56.1
MSTRG.374 Avicennia marina HOM05D003576 ORTHO05D004124 4.1e-82 308.9 275 58.9
Medtr6g033535 Medicago truncatula HOM05D003576 ORTHO05D004124 4.1e-82 308.9 289 54.7
FvH4_2g18840 Fragaria vesca HOM05D003576 ORTHO05D004124 5.3e-82 308.5 239 63.2
MD07G1174600 Malus domestica HOM05D003576 ORTHO05D004124 5.3e-82 308.5 241 62.2
Lsat_1_v5_gn_9_69180 Lactuca sativa HOM05D003576 ORTHO05D004124 7.0e-82 308.1 239 62.8
Sc20g0001840 Simmondsia chinensis HOM05D003576 ORTHO05D004124 7.0e-82 308.1 236 63.1
CAN.G694.86 Capsicum annuum HOM05D003576 ORTHO05D004124 9.1e-82 307.8 236 63.1
Cc02_g11340 Coffea canephora HOM05D003576 ORTHO05D004124 1.2e-81 307.4 275 57.8
Dinv36441 Davidia involucrata HOM05D003576 ORTHO05D004124 1.2e-81 307.4 271 57.9
RcHm_v2.0_Chr6g0284661 Rosa chinensis HOM05D003576 ORTHO05D004124 1.2e-81 307.4 239 62.8
TAR633G2490 Trochodendron aralioides HOM05D003576 ORTHO05D004124 1.2e-81 307.4 303 53.1
Nitab4.5_0000476g0030 Nicotiana tabacum HOM05D003576 ORTHO05D004124 4.5e-81 305.4 241 60.6
Nitab4.5_0009985g0010 Nicotiana tabacum HOM05D003576 ORTHO05D004124 7.7e-81 304.7 241 60.6
Sabra10G0172200 Salix brachista HOM05D003576 ORTHO05D004124 7.7e-81 304.7 303 55.1
Potri.010G222800 Populus trichocarpa HOM05D003576 ORTHO05D004124 1.7e-80 303.5 303 55.1
CDE04G0074 Ceratophyllum demersum HOM05D003576 ORTHO05D004124 2.9e-80 302.8 268 55.6
ClCG05G021030 Citrullus lanatus HOM05D003576 ORTHO05D004124 2.9e-80 302.8 296 54.1
CsaV3_6G036430 Cucumis sativus L. HOM05D003576 ORTHO05D004124 2.9e-80 302.8 240 61.2
ECA232G3526 Erigeron canadensis HOM05D003576 ORTHO05D004124 2.9e-80 302.8 239 61.9
EL10Ac2g03301 Beta vulgaris HOM05D003576 ORTHO05D004124 3.8e-80 302.4 241 60.6
ClCG08G007510 Citrullus lanatus HOM05D003576 ORTHO05D004124 5.0e-80 302.0 241 61.0
CsaV3_5G036280 Cucumis sativus L. HOM05D003576 ORTHO05D004124 8.5e-80 301.2 241 61.0
Nn2g13102 Nelumbo nucifera HOM05D003576 ORTHO05D004124 1.1e-79 300.8 270 54.1
Sed0008938 Sechium edule HOM05D003576 ORTHO05D004124 3.2e-79 299.3 299 53.2
AUR62018250 Chenopodium quinoa HOM05D003576 ORTHO05D004124 4.2e-79 298.9 244 59.4
PSO063G6153 Papaver somniferum HOM05D003576 ORTHO05D004124 4.2e-79 298.9 237 59.9
Sed0006763 Sechium edule HOM05D003576 ORTHO05D004124 4.2e-79 298.9 241 59.8
ECA238G1405 Erigeron canadensis HOM05D003576 ORTHO05D004124 9.4e-79 297.7 240 60.0
Migut.F01761 Erythranthe guttata HOM05D003576 ORTHO05D004124 1.6e-78 297.0 274 57.7
Zm00001eb273430 Zea mays HOM05D003576 ORTHO05D004124 4.7e-78 295.4 246 56.5
BcaC04g19104 Brassica carinata HOM05D003576 ORTHO05D004124 1.0e-77 294.3 301 57.1
PSO339G2752 Papaver somniferum HOM05D003576 ORTHO05D004124 1.0e-77 294.3 233 60.1
PSO384G2156 Papaver somniferum HOM05D003576 ORTHO05D004124 1.4e-77 293.9 233 59.7
Os02g0805900 Oryza sativa ssp. japonica HOM05D003576 ORTHO05D004124 1.8e-77 293.5 237 57.0
FAN15G0532 Fragaria x ananassa HOM05D003576 ORTHO05D004124 1.2e-76 290.8 250 59.2
Aqoxy1G02388 Aquilegia oxysepala HOM05D003576 ORTHO05D004124 9.7e-76 287.7 253 56.1
SalBow3G2401 Salvia bowleyana HOM05D003576 ORTHO05D004124 2.2e-75 286.6 301 51.5
ATR0048G008 Amborella trichopoda HOM05D003576 ORTHO05D004124 3.7e-75 285.8 250 56.8
AUR62037754 Chenopodium quinoa HOM05D003576 ORTHO05D004124 4.8e-75 285.4 268 54.1
CiPaw.01G272700 Carya illinoinensis HOM05D003576 ORTHO05D004124 8.2e-75 284.6 247 59.1
FAN24G3530 Fragaria x ananassa HOM05D003576 ORTHO05D004124 1.1e-74 284.3 239 59.8
Actinidia06773 Actinidia chinensis HOM05D003576 ORTHO05D004124 1.4e-74 283.9 203 67.0
unitig_699.g19224 Utricularia gibba HOM05D003576 ORTHO05D004124 1.4e-74 283.9 236 61.4
MELO3C012428.2 Cucumis melo HOM05D003576 ORTHO05D004124 9.1e-74 281.2 226 61.1
HPP92_020748 Vanilla planifolia HOM05D003576 ORTHO05D004124 9.1e-74 281.2 252 56.0
Mapoly0154s0022 Marchantia polymorpha HOM05D003576 ORTHO05D004124 1.2e-73 280.8 238 55.9
Peaxi162Scf01175g00019 Petunia axillaris HOM05D003576 ORTHO05D004124 2.7e-73 279.6 241 57.7
PSO339G5183 Papaver somniferum HOM05D003576 ORTHO05D004124 1.3e-72 277.3 220 60.0
PGR044G0669 Punica granatum HOM05D003576 ORTHO05D004124 9.4e-71 271.2 236 56.8
SHI19520 Sapria himalayana HOM05D003576 ORTHO05D004124 9.4e-71 271.2 291 50.9
Pp3c1_22690 Physcomitrium patens HOM05D003576 ORTHO05D004124 1.2e-70 270.8 268 47.8
AagrBONN_evm.TU.Sc2ySwM_228.4941 Anthoceros agrestis HOM05D003576 ORTHO05D004124 3.0e-69 266.2 236 52.5
Pp3c10_5620 Physcomitrium patens HOM05D003576 ORTHO05D004124 1.2e-68 264.2 253 50.6
COL.COLO4_23659 Corchorus olitorius HOM05D003576 ORTHO05D004124 2.0e-68 263.5 227 59.0
SMO356G0089 Selaginella moellendorffii HOM05D003576 ORTHO05D004124 7.5e-68 261.5 237 51.9
Pp3c2_16830 Physcomitrium patens HOM05D003576 ORTHO05D004124 1.3e-67 260.8 255 47.8
MELO3C019797.2 Cucumis melo HOM05D003576 ORTHO05D004124 1.4e-66 257.3 192 63.5
Sp3g29060 Schrenkiella parvula HOM05D003576 ORTHO05D004124 3.5e-65 252.7 241 57.7
SGA_v2.0_scaffold100G29594 Striga asiatica HOM05D003576 ORTHO05D004124 3.5e-65 252.7 268 53.4
Duzib114G0196 Durio zibethinus HOM05D003576 ORTHO05D004124 1.7e-64 250.4 254 53.9
CBR_g38931 Chara braunii HOM05D003576 ORTHO05D004124 1.9e-63 246.9 238 50.0
Cpa.g.sc53.83 Carica papaya HOM05D003576 ORTHO05D004124 6.8e-61 238.4 303 46.2
Haze_16891 Corylus avellana HOM05D003576 ORTHO05D004124 1.3e-59 234.2 277 48.0
Ah.10g032640 Amaranthus hybridus HOM05D003576 ORTHO05D004124 5.4e-58 228.8 236 50.4
TAR636G0323 Trochodendron aralioides HOM05D003576 ORTHO05D004124 8.6e-56 221.5 189 57.7
CDE03G0119 Ceratophyllum demersum HOM05D003576 ORTHO05D004124 3.0e-48 196.4 132 67.4
Zm00001eb290030 Zea mays HOM05D003576 ORTHO05D004124 8.0e-46 188.3 138 58.7
MCO14G142 Micromonas commoda HOM05D003576 ORTHO05D004124 3.1e-45 186.4 233 41.2
C03p07100 Brassica napus HOM05D002836 ORTHO05D003107 1.5e-44 184.1 301 42.5
BolC3t13209H Brassica oleracea HOM05D003576 ORTHO05D004124 3.4e-44 183.0 310 42.6
Zm00001eb366000 Zea mays HOM05D003576 ORTHO05D004124 3.4e-44 183.0 138 58.0
Cfa023847 Carpinus fangiana HOM05D003576 ORTHO05D004124 2.9e-43 179.9 248 41.9
Psat1g000080 Pisum sativum HOM05D003576 ORTHO05D004124 1.9e-42 177.2 214 47.2
CBR_g39890 Chara braunii HOM05D003576 ORTHO05D004124 3.2e-42 176.4 168 49.4
C04p47130 Brassica napus HOM05D003576 ORTHO05D004124 4.1e-42 176.0 92 92.4
CDE03G0459 Ceratophyllum demersum HOM05D003576 ORTHO05D004124 5.4e-42 175.6 156 55.8
PRCOL_00003742 Prasinoderma coloniale HOM05D003576 ORTHO05D004124 5.4e-42 175.6 200 44.5
FAN15G1487 Fragaria x ananassa HOM05D003576 ORTHO05D004124 1.2e-41 174.5 152 56.6
Ah.16g106400 Amaranthus hybridus HOM05D003576 ORTHO05D004124 1.0e-40 171.4 249 43.0
Ca_27771_v3 Cicer arietinum L. HOM05D003576 ORTHO05D004124 1.0e-40 171.4 198 50.0
Cre07.g344850 Chlamydomonas reinhardtii HOM05D003576 ORTHO05D004124 1.9e-39 167.2 248 37.9
Sp7g03350 Schrenkiella parvula HOM05D003576 ORTHO05D004124 1.9e-39 167.2 141 61.7
SEGI_06233 Sequoiadendron giganteum HOM05D003576 ORTHO05D004124 1.2e-36 157.9 222 41.0
Sp7g01550 Schrenkiella parvula HOM05D003576 ORTHO05D004124 2.0e-36 157.1 227 41.9
CSS0030842 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 2.1e-30 137.1 158 50.0
Ca_07562_v3 Cicer arietinum L. HOM05D003576 ORTHO05D004124 2.0e-28 130.6 172 44.8
Psat1g098680 Pisum sativum HOM05D003576 ORTHO05D004124 1.7e-27 127.5 145 47.6
Oeu017646.1 Olea europaea HOM05D003576 ORTHO05D004124 6.4e-27 125.6 117 59.0
CSS0009257 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 3.2e-26 123.2 85 72.9
Zm00001eb305720 Zea mays HOM05D003576 ORTHO05D004124 1.9e-23 114.0 77 61.0
AL4G23990 Arabidopsis lyrata HOM05D003576 ORTHO05D004124 4.3e-23 112.8 123 52.0
TAR636G2201 Trochodendron aralioides HOM05D003576 ORTHO05D004124 8.4e-19 98.6 104 46.2
CDE03G0152 Ceratophyllum demersum HOM05D003576 ORTHO05D004124 1.6e-14 84.3 112 45.5
CSS0032612 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 1.1e-10 71.6 52 69.2
CSS0050114 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 1.1e-10 71.6 52 69.2
CSS0046774 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 2.4e-10 70.5 52 67.3
CSS0033760 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 7.1e-10 68.9 52 65.4
Psat1g098640 Pisum sativum HOM05D003576 ORTHO05D004124 1.2e-09 68.2 47 61.7


User provided reference genes

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