Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A04p13320 Brassica napus HOM05D003576 ORTHO05D004124 8.9e-170 600.1 292 100.0
BolC4t26304H Brassica oleracea HOM05D003576 ORTHO05D004124 2.0e-161 572.4 292 95.5
C04p47100 Brassica napus HOM05D003576 ORTHO05D004124 8.4e-160 567.0 294 94.2
BraA04t16990Z Brassica rapa HOM05D003576 ORTHO05D004124 1.6e-155 552.7 293 93.9
BcaB06g27487 Brassica carinata HOM05D003576 ORTHO05D004124 2.1e-150 535.8 293 90.4
Sp6g30460 Schrenkiella parvula HOM05D003576 ORTHO05D004124 2.4e-114 416.0 330 66.4
Thhalv10014094m.g Eutrema salsugineum HOM05D003576 ORTHO05D004124 2.6e-113 412.5 264 76.5
BcaB01g05348 Brassica carinata HOM05D003576 ORTHO05D004124 1.3e-112 410.2 315 67.6
BcaC04g19105 Brassica carinata HOM05D003576 ORTHO05D004124 2.2e-112 409.5 310 67.4
Carub.0006s1173 Capsella rubella HOM05D003576 ORTHO05D004124 2.2e-112 409.5 284 71.5
AL6G24180 Arabidopsis lyrata HOM05D003576 ORTHO05D004124 2.9e-112 409.1 284 71.5
AT5G13570 Arabidopsis thaliana HOM05D003576 ORTHO05D004124 6.5e-112 407.9 280 72.1
BcaC04g19106 Brassica carinata HOM05D003576 ORTHO05D004124 1.4e-111 406.8 283 70.7
BolC9t59197H Brassica oleracea HOM05D003576 ORTHO05D004124 5.5e-111 404.8 283 70.7
CARHR199870 Cardamine hirsuta HOM05D003576 ORTHO05D004124 1.2e-110 403.7 264 74.6
BcaNung01897 Brassica carinata HOM05D003576 ORTHO05D004124 2.7e-110 402.5 311 67.5
C09p63530 Brassica napus HOM05D003576 ORTHO05D004124 2.7e-110 402.5 283 70.3
BcaNung06333 Brassica carinata HOM05D003576 ORTHO05D004124 7.9e-110 401.0 311 67.2
A10p24700 Brassica napus HOM05D003576 ORTHO05D004124 7.9e-110 401.0 283 70.0
A02p02030 Brassica napus HOM05D003576 ORTHO05D004124 1.0e-109 400.6 311 66.9
BolC2t06566H Brassica oleracea HOM05D003576 ORTHO05D004124 1.8e-109 399.8 311 67.2
C02p06240 Brassica napus HOM05D003576 ORTHO05D004124 3.0e-109 399.1 313 66.8
BraA10t44533Z Brassica rapa HOM05D003576 ORTHO05D004124 3.0e-109 399.1 286 70.6
THA.LOC104827300 Tarenaya hassleriana HOM05D003576 ORTHO05D004124 3.0e-109 399.1 312 67.0
BcaNung01144 Brassica carinata HOM05D003576 ORTHO05D004124 6.5e-104 381.3 314 65.3
arahy.Tifrunner.gnm1.ann1.33B581 Arachis hypogaea HOM05D003576 ORTHO05D004124 8.5e-104 380.9 289 65.7
Aa31LG11G7770 Aethionema arabicum HOM05D003576 ORTHO05D004124 1.5e-103 380.2 358 59.8
arahy.Tifrunner.gnm1.ann1.THE0XD Arachis hypogaea HOM05D003576 ORTHO05D004124 1.5e-103 380.2 289 65.4
Glyma.02G074100 Glycine max HOM05D003576 ORTHO05D004124 1.5e-103 380.2 289 66.4
Phvul.004G083500 Phaseolus vulgaris HOM05D003576 ORTHO05D004124 1.5e-103 380.2 280 67.9
Glyma.16G155600 Glycine max HOM05D003576 ORTHO05D004124 1.9e-103 379.8 289 66.1
Thecc.10G074000 Theobroma cacao HOM05D003576 ORTHO05D004124 2.5e-103 379.4 270 68.9
THA.LOC104809882 Tarenaya hassleriana HOM05D003576 ORTHO05D004124 9.4e-103 377.5 259 72.6
Lalb_Chr01g0010001 Lupinus albus HOM05D003576 ORTHO05D004124 1.2e-102 377.1 293 64.8
Gohir.D10G214000 Gossypium hirsutum HOM05D003576 ORTHO05D004124 3.6e-102 375.6 310 62.3
Lj2g0011631 Lotus japonicus HOM05D003576 ORTHO05D004124 3.6e-102 375.6 262 71.0
Cfa021515 Carpinus fangiana HOM05D003576 ORTHO05D004124 4.7e-102 375.2 261 71.6
Gohir.A10G205700 Gossypium hirsutum HOM05D003576 ORTHO05D004124 4.7e-102 375.2 310 62.3
Gorai.011G239400 Gossypium raimondii HOM05D003576 ORTHO05D004124 4.7e-102 375.2 310 62.3
TPR.G36712 Trifolium pratense HOM05D003576 ORTHO05D004124 6.1e-102 374.8 293 64.2
BcaB06g27496 Brassica carinata HOM05D003576 ORTHO05D004124 1.4e-101 373.6 284 67.6
MSTRG.374 Avicennia marina HOM05D003576 ORTHO05D004124 1.8e-101 373.2 283 67.1
Atru.chr12.756 Acer truncatum HOM05D003576 ORTHO05D004124 2.3e-101 372.9 265 67.5
Lalb_Chr03g0035911 Lupinus albus HOM05D003576 ORTHO05D004124 2.3e-101 372.9 293 63.5
Medtr6g033535 Medicago truncatula HOM05D003576 ORTHO05D004124 2.3e-101 372.9 293 63.1
vmacro07071 Vaccinium macrocarpon HOM05D003576 ORTHO05D004124 2.3e-101 372.9 265 69.4
QL08p055786 Quercus lobata HOM05D003576 ORTHO05D004124 5.2e-101 371.7 262 69.5
Atru.chr12.780 Acer truncatum HOM05D003576 ORTHO05D004124 2.0e-100 369.8 265 67.2
Migut.F01985 Erythranthe guttata HOM05D003576 ORTHO05D004124 3.3e-100 369.0 261 70.1
Ciclev10032124m.g Citrus clementina HOM05D003576 ORTHO05D004124 4.4e-100 368.6 303 63.0
Hma1.2p1_0382F.1_g140100 Hydrangea macrophylla HOM05D003576 ORTHO05D004124 5.7e-100 368.2 265 66.4
MD01G1108400 Malus domestica HOM05D003576 ORTHO05D004124 7.5e-100 367.9 265 68.7
Prupe.2G213500 Prunus persica HOM05D003576 ORTHO05D004124 9.7e-100 367.5 264 67.8
MD07G1174600 Malus domestica HOM05D003576 ORTHO05D004124 1.7e-99 366.7 284 65.1
Rhsim03G0120500 Rhododendron simsii HOM05D003576 ORTHO05D004124 3.7e-99 365.5 267 68.2
Lj3A882G53 Lonicera japonica HOM05D003576 ORTHO05D004124 6.3e-99 364.8 265 67.2
DCAR_019104 Daucus carota HOM05D003576 ORTHO05D004124 1.4e-98 363.6 277 65.0
Manes.07G100300 Manihot esculenta HOM05D003576 ORTHO05D004124 1.4e-98 363.6 289 63.7
Potri.008G039500 Populus trichocarpa HOM05D003576 ORTHO05D004124 1.8e-98 363.2 309 61.2
Sabra08G0027100 Salix brachista HOM05D003576 ORTHO05D004124 3.1e-98 362.5 305 61.0
PGR142G1591 Punica granatum HOM05D003576 ORTHO05D004124 5.3e-98 361.7 311 59.8
RcHm_v2.0_Chr6g0284661 Rosa chinensis HOM05D003576 ORTHO05D004124 5.3e-98 361.7 316 60.1
Actinidia38283 Actinidia chinensis HOM05D003576 ORTHO05D004124 7.0e-98 361.3 265 67.5
Cc02_g11340 Coffea canephora HOM05D003576 ORTHO05D004124 9.1e-98 360.9 286 64.0
FvH4_2g18840 Fragaria vesca HOM05D003576 ORTHO05D004124 9.1e-98 360.9 283 63.6
CAN.G694.86 Capsicum annuum HOM05D003576 ORTHO05D004124 2.0e-97 359.8 261 66.7
CiPaw.02G173900 Carya illinoinensis HOM05D003576 ORTHO05D004124 2.0e-97 359.8 265 66.8
TWI15G0705 Tripterygium wilfordii HOM05D003576 ORTHO05D004124 2.0e-97 359.8 258 68.2
BolC4t26305H Brassica oleracea HOM05D003576 ORTHO05D004124 2.7e-97 359.4 289 64.7
Dinv36441 Davidia involucrata HOM05D003576 ORTHO05D004124 2.7e-97 359.4 262 67.2
Sc20g0001840 Simmondsia chinensis HOM05D003576 ORTHO05D004124 2.7e-97 359.4 265 66.0
Solyc05g056110.3 Solanum lycopersicum HOM05D003576 ORTHO05D004124 2.7e-97 359.4 261 64.4
Sopen05g034520 Solanum pennellii HOM05D003576 ORTHO05D004124 2.7e-97 359.4 261 64.4
Potri.010G222800 Populus trichocarpa HOM05D003576 ORTHO05D004124 3.5e-97 359.0 258 67.4
CSS0018972 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 7.7e-97 357.8 280 63.6
CSS0040774 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 7.7e-97 357.8 280 63.6
ClCG08G007510 Citrullus lanatus HOM05D003576 ORTHO05D004124 7.7e-97 357.8 262 66.4
Eucgr.J01085 Eucalyptus grandis HOM05D003576 ORTHO05D004124 7.7e-97 357.8 306 61.4
ClCG05G021030 Citrullus lanatus HOM05D003576 ORTHO05D004124 1.0e-96 357.5 306 60.8
BcaC04g19104 Brassica carinata HOM05D003576 ORTHO05D004124 1.3e-96 357.1 298 63.4
CsaV3_6G036430 Cucumis sativus L. HOM05D003576 ORTHO05D004124 1.3e-96 357.1 262 66.0
Sed0008938 Sechium edule HOM05D003576 ORTHO05D004124 1.3e-96 357.1 267 67.0
GSVIVG01016273001 Vitis vinifera HOM05D003576 ORTHO05D004124 1.3e-96 357.1 265 66.0
A04p13360 Brassica napus HOM05D003576 ORTHO05D004124 1.7e-96 356.7 290 63.1
BraA04t16996Z Brassica rapa HOM05D003576 ORTHO05D004124 2.9e-96 355.9 290 63.8
BcaB06g27493 Brassica carinata HOM05D003576 ORTHO05D004124 3.8e-96 355.5 285 64.9
CANSAT56G0320 Cannabis sativa HOM05D003576 ORTHO05D004124 6.5e-96 354.8 316 60.4
Sed0006763 Sechium edule HOM05D003576 ORTHO05D004124 6.5e-96 354.8 262 65.6
CsaV3_5G036280 Cucumis sativus L. HOM05D003576 ORTHO05D004124 1.1e-95 354.0 306 60.5
Nitab4.5_0000476g0030 Nicotiana tabacum HOM05D003576 ORTHO05D004124 1.5e-95 353.6 282 62.4
EL10Ac2g03301 Beta vulgaris HOM05D003576 ORTHO05D004124 1.9e-95 353.2 265 66.4
BraA04t16993Z Brassica rapa HOM05D003576 ORTHO05D004124 1.9e-95 353.2 291 62.5
Dinv31323 Davidia involucrata HOM05D003576 ORTHO05D004124 1.9e-95 353.2 256 68.0
HanXRQChr15g0496951 Helianthus annuus HOM05D003576 ORTHO05D004124 1.6e-94 350.1 279 62.4
Sabra10G0172200 Salix brachista HOM05D003576 ORTHO05D004124 2.1e-94 349.7 258 67.4
FAN15G0532 Fragaria x ananassa HOM05D003576 ORTHO05D004124 2.7e-94 349.4 294 61.2
Lsat_1_v5_gn_9_69180 Lactuca sativa HOM05D003576 ORTHO05D004124 2.7e-94 349.4 262 64.5
BraA04t16999Z Brassica rapa HOM05D003576 ORTHO05D004124 3.6e-94 349.0 291 62.2
AUR62018250 Chenopodium quinoa HOM05D003576 ORTHO05D004124 4.7e-94 348.6 265 63.8
Migut.F01761 Erythranthe guttata HOM05D003576 ORTHO05D004124 6.1e-94 348.2 262 64.5
A04p13340 Brassica napus HOM05D003576 ORTHO05D004124 8.0e-94 347.8 290 62.1
A04p13380 Brassica napus HOM05D003576 ORTHO05D004124 8.0e-94 347.8 290 62.1
A04p13410 Brassica napus HOM05D003576 ORTHO05D004124 8.0e-94 347.8 290 62.1
BraA04t16997Z Brassica rapa HOM05D003576 ORTHO05D004124 3.0e-93 345.9 293 62.8
ECA232G3526 Erigeron canadensis HOM05D003576 ORTHO05D004124 3.0e-93 345.9 289 60.6
Nn2g13102 Nelumbo nucifera HOM05D003576 ORTHO05D004124 4.0e-93 345.5 265 61.1
TAR633G2490 Trochodendron aralioides HOM05D003576 ORTHO05D004124 5.2e-93 345.1 280 62.5
ECA238G1405 Erigeron canadensis HOM05D003576 ORTHO05D004124 2.0e-92 343.2 288 60.1
BraA04t16991Z Brassica rapa HOM05D003576 ORTHO05D004124 4.4e-92 342.0 305 60.0
Nitab4.5_0009985g0010 Nicotiana tabacum HOM05D003576 ORTHO05D004124 4.4e-92 342.0 248 66.5
C04p47110 Brassica napus HOM05D003576 ORTHO05D004124 4.8e-91 338.6 248 67.3
FAN24G3530 Fragaria x ananassa HOM05D003576 ORTHO05D004124 1.8e-90 336.7 283 60.4
SalBow3G2401 Salvia bowleyana HOM05D003576 ORTHO05D004124 4.1e-90 335.5 305 57.7
CDE04G0074 Ceratophyllum demersum HOM05D003576 ORTHO05D004124 1.2e-89 334.0 278 58.6
BolC4t26310H Brassica oleracea HOM05D003576 ORTHO05D004124 1.6e-89 333.6 239 68.6
ATR0048G008 Amborella trichopoda HOM05D003576 ORTHO05D004124 2.7e-89 332.8 262 63.4
Aqoxy1G02388 Aquilegia oxysepala HOM05D003576 ORTHO05D004124 7.7e-89 331.3 262 61.5
PSO339G2752 Papaver somniferum HOM05D003576 ORTHO05D004124 1.3e-88 330.5 262 61.1
PSO384G2156 Papaver somniferum HOM05D003576 ORTHO05D004124 1.7e-88 330.1 262 60.7
Zm00001eb273430 Zea mays HOM05D003576 ORTHO05D004124 1.7e-88 330.1 273 59.3
PGR044G0669 Punica granatum HOM05D003576 ORTHO05D004124 3.8e-88 328.9 314 55.4
PSO063G6153 Papaver somniferum HOM05D003576 ORTHO05D004124 5.0e-88 328.6 256 61.7
Peaxi162Scf01175g00019 Petunia axillaris HOM05D003576 ORTHO05D004124 6.5e-88 328.2 282 60.6
Sp7g03020 Schrenkiella parvula HOM05D003576 ORTHO05D004124 6.5e-88 328.2 286 59.8
HPP92_020748 Vanilla planifolia HOM05D003576 ORTHO05D004124 6.5e-88 328.2 254 61.4
AUR62037754 Chenopodium quinoa HOM05D003576 ORTHO05D004124 8.5e-88 327.8 272 61.4
MELO3C012428.2 Cucumis melo HOM05D003576 ORTHO05D004124 1.9e-87 326.6 228 71.5
Os02g0805900 Oryza sativa ssp. japonica HOM05D003576 ORTHO05D004124 4.2e-87 325.5 258 61.2
CiPaw.01G272700 Carya illinoinensis HOM05D003576 ORTHO05D004124 2.7e-86 322.8 252 65.9
Mapoly0154s0022 Marchantia polymorpha HOM05D003576 ORTHO05D004124 1.0e-85 320.9 268 57.8
unitig_699.g19224 Utricularia gibba HOM05D003576 ORTHO05D004124 1.8e-85 320.1 289 58.8
SHI19520 Sapria himalayana HOM05D003576 ORTHO05D004124 2.3e-85 319.7 291 57.4
Actinidia06773 Actinidia chinensis HOM05D003576 ORTHO05D004124 3.7e-83 312.4 207 72.9
PSO339G5183 Papaver somniferum HOM05D003576 ORTHO05D004124 4.1e-82 308.9 227 65.6
SGA_v2.0_scaffold100G29594 Striga asiatica HOM05D003576 ORTHO05D004124 4.5e-81 305.4 273 60.1
SMO356G0089 Selaginella moellendorffii HOM05D003576 ORTHO05D004124 1.0e-80 304.3 261 54.4
Duzib114G0196 Durio zibethinus HOM05D003576 ORTHO05D004124 2.3e-80 303.1 265 60.4
COL.COLO4_23659 Corchorus olitorius HOM05D003576 ORTHO05D004124 1.9e-79 300.1 232 66.4
AagrBONN_evm.TU.Sc2ySwM_228.4941 Anthoceros agrestis HOM05D003576 ORTHO05D004124 3.3e-79 299.3 272 54.4
MELO3C019797.2 Cucumis melo HOM05D003576 ORTHO05D004124 4.7e-78 295.4 194 73.7
Pp3c10_5620 Physcomitrium patens HOM05D003576 ORTHO05D004124 1.4e-77 293.9 265 54.7
Pp3c2_16830 Physcomitrium patens HOM05D003576 ORTHO05D004124 5.7e-76 288.5 260 53.1
Cpa.g.sc53.83 Carica papaya HOM05D003576 ORTHO05D004124 2.9e-75 286.2 294 54.1
Pp3c1_22690 Physcomitrium patens HOM05D003576 ORTHO05D004124 4.9e-75 285.4 265 50.9
Haze_16891 Corylus avellana HOM05D003576 ORTHO05D004124 7.0e-74 281.6 284 54.2
CBR_g38931 Chara braunii HOM05D003576 ORTHO05D004124 1.6e-73 280.4 235 57.4
BcaB06g27489 Brassica carinata HOM05D003576 ORTHO05D004124 1.3e-72 277.3 204 68.6
Ah.10g032640 Amaranthus hybridus HOM05D003576 ORTHO05D004124 3.3e-71 272.7 270 53.0
Sp3g29060 Schrenkiella parvula HOM05D003576 ORTHO05D004124 6.2e-70 268.5 245 58.0
BcaB06g27491 Brassica carinata HOM05D003576 ORTHO05D004124 1.8e-69 266.9 177 72.9
TAR636G0323 Trochodendron aralioides HOM05D003576 ORTHO05D004124 1.7e-64 250.4 212 59.0
BolC4t26308H Brassica oleracea HOM05D003576 ORTHO05D004124 3.9e-64 249.2 289 49.5
A04p13390 Brassica napus HOM05D003576 ORTHO05D004124 1.1e-61 241.1 289 48.1
C03p07100 Brassica napus HOM05D002836 ORTHO05D003107 1.8e-61 240.4 301 48.2
BolC3t13209H Brassica oleracea HOM05D003576 ORTHO05D004124 4.4e-60 235.7 310 47.1
Zm00001eb290030 Zea mays HOM05D003576 ORTHO05D004124 3.6e-54 216.1 138 67.4
Cfa023847 Carpinus fangiana HOM05D003576 ORTHO05D004124 1.1e-53 214.5 256 45.3
Ca_27771_v3 Cicer arietinum L. HOM05D003576 ORTHO05D004124 3.1e-53 213.0 181 63.0
FAN15G1487 Fragaria x ananassa HOM05D003576 ORTHO05D004124 1.2e-52 211.1 157 65.6
Zm00001eb366000 Zea mays HOM05D003576 ORTHO05D004124 1.5e-52 210.7 138 66.7
CDE03G0119 Ceratophyllum demersum HOM05D003576 ORTHO05D004124 4.4e-52 209.1 136 69.9
CDE03G0459 Ceratophyllum demersum HOM05D003576 ORTHO05D004124 3.0e-48 196.4 160 61.2
Psat1g000080 Pisum sativum HOM05D003576 ORTHO05D004124 3.9e-48 196.1 220 50.0
Ah.16g106400 Amaranthus hybridus HOM05D003576 ORTHO05D004124 5.1e-48 195.7 273 46.2
MCO14G142 Micromonas commoda HOM05D003576 ORTHO05D004124 8.6e-48 194.9 242 41.7
CBR_g39890 Chara braunii HOM05D003576 ORTHO05D004124 1.5e-47 194.1 170 53.5
Sp7g01550 Schrenkiella parvula HOM05D003576 ORTHO05D004124 3.3e-47 193.0 234 47.9
PRCOL_00003742 Prasinoderma coloniale HOM05D003576 ORTHO05D004124 3.8e-43 179.5 200 45.5
SEGI_06233 Sequoiadendron giganteum HOM05D003576 ORTHO05D004124 1.4e-42 177.6 257 38.5
Cre07.g344850 Chlamydomonas reinhardtii HOM05D003576 ORTHO05D004124 2.4e-42 176.8 253 40.3
Sp7g03350 Schrenkiella parvula HOM05D003576 ORTHO05D004124 2.7e-41 173.3 135 66.7
Ca_07562_v3 Cicer arietinum L. HOM05D003576 ORTHO05D004124 5.8e-36 155.6 140 59.3
Psat1g098680 Pisum sativum HOM05D003576 ORTHO05D004124 6.4e-35 152.1 149 53.7
CSS0030842 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 2.7e-33 146.7 136 58.1
Oeu017646.1 Olea europaea HOM05D003576 ORTHO05D004124 7.4e-31 138.7 110 65.5
Zm00001eb305720 Zea mays HOM05D003576 ORTHO05D004124 1.2e-28 131.3 77 70.1
CSS0009257 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 1.3e-27 127.9 85 76.5
AL4G23990 Arabidopsis lyrata HOM05D003576 ORTHO05D004124 5.5e-26 122.5 124 53.2
TAR636G2201 Trochodendron aralioides HOM05D003576 ORTHO05D004124 1.6e-25 120.9 112 54.5
C04p47130 Brassica napus HOM05D003576 ORTHO05D004124 5.1e-24 115.9 89 59.6
CDE03G0152 Ceratophyllum demersum HOM05D003576 ORTHO05D004124 2.5e-18 97.1 100 48.0
Psat1g098640 Pisum sativum HOM05D003576 ORTHO05D004124 2.4e-13 80.5 54 68.5
CSS0032612 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 1.0e-11 75.1 52 75.0
CSS0046774 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 1.0e-11 75.1 52 75.0
CSS0050114 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 1.0e-11 75.1 52 75.0
BcaNung01892 Brassica carinata HOM05D003576 ORTHO05D000199 2.2e-11 73.9 44 79.5
CSS0033760 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 6.5e-11 72.4 52 71.2
arahy.Tifrunner.gnm1.ann1.EX6GR6 Arachis hypogaea HOM05D003576 ORTHO05D004124 2.5e-07 60.5 59 50.8


User provided reference genes

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