Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A04p00980 Brassica napus HOM05D000282 ORTHO05D013245 3.4e-46 188.0 93 100.0
AL5G44050 Arabidopsis lyrata HOM05D000282 ORTHO05D004791 7.5e-30 133.7 101 70.3
AT3G61650 Arabidopsis thaliana HOM05D000282 ORTHO05D004791 7.5e-30 133.7 101 70.3
Carub.0005s2834 Capsella rubella HOM05D000282 ORTHO05D004791 7.5e-30 133.7 101 70.3
BcaB02g07362 Brassica carinata HOM05D000282 ORTHO05D004791 9.8e-30 133.3 101 71.3
Thhalv10005943m.g Eutrema salsugineum HOM05D000282 ORTHO05D004791 1.3e-29 132.9 101 70.3
Aa31LG10G15630 Aethionema arabicum HOM05D000282 ORTHO05D004791 2.9e-29 131.7 101 69.3
CARHR004860 Cardamine hirsuta HOM05D000282 ORTHO05D004791 2.9e-29 131.7 101 69.3
BcaC02g10242 Brassica carinata HOM05D000282 ORTHO05D013245 6.4e-29 130.6 97 72.2
C04p31170 Brassica napus HOM05D000282 ORTHO05D013245 6.4e-29 130.6 97 72.2
Sp5g01760 Schrenkiella parvula HOM05D000282 ORTHO05D004791 8.3e-29 130.2 101 68.3
AL6G15510 Arabidopsis lyrata HOM05D000282 ORTHO05D004791 1.1e-28 129.8 101 68.3
Carub.0006s0452 Capsella rubella HOM05D000282 ORTHO05D004791 1.1e-28 129.8 101 68.3
AT5G05620 Arabidopsis thaliana HOM05D000282 ORTHO05D004791 3.2e-28 128.3 101 67.3
THA.LOC104817337 Tarenaya hassleriana HOM05D000282 ORTHO05D004791 5.4e-28 127.5 101 66.3
BcaC07g40674 Brassica carinata HOM05D000282 ORTHO05D004791 1.6e-27 125.9 101 68.3
A09p53710 Brassica napus HOM05D000282 ORTHO05D004791 1.6e-27 125.9 101 68.3
C08p36490 Brassica napus HOM05D000282 ORTHO05D004791 1.6e-27 125.9 101 68.3
BolC8t51232H Brassica oleracea HOM05D000282 ORTHO05D004791 1.6e-27 125.9 101 68.3
BraA09t40793Z Brassica rapa HOM05D000282 ORTHO05D004791 1.6e-27 125.9 101 68.3
Cfa003833 Carpinus fangiana HOM05D000282 ORTHO05D004791 1.6e-27 125.9 99 66.7
Haze_15621 Corylus avellana HOM05D000282 ORTHO05D004791 1.6e-27 125.9 99 66.7
Eucgr.E00075 Eucalyptus grandis HOM05D000282 ORTHO05D004791 3.5e-27 124.8 96 66.7
GSVIVG01027050001 Vitis vinifera HOM05D000282 ORTHO05D004791 4.6e-27 124.4 99 65.7
CANSAT56G2763 Cannabis sativa HOM05D000282 ORTHO05D013245 6.0e-27 124.0 99 65.7
vmacro13149 Vaccinium macrocarpon HOM05D000282 ORTHO05D004791 1.0e-26 123.2 101 64.4
MELO3C006063.2 Cucumis melo HOM05D000282 ORTHO05D004791 1.3e-26 122.9 99 64.6
CsaV3_3G008430 Cucumis sativus L. HOM05D000282 ORTHO05D004791 1.3e-26 122.9 99 64.6
Hund27221 Selenicereus undatus HOM05D000282 ORTHO05D004791 1.3e-26 122.9 101 64.4
Rhsim07G0006700 Rhododendron simsii HOM05D000282 ORTHO05D004791 1.7e-26 122.5 101 63.4
Sed0019380 Sechium edule HOM05D000282 ORTHO05D004791 1.7e-26 122.5 99 65.7
Hund16696 Selenicereus undatus HOM05D000282 ORTHO05D004791 1.7e-26 122.5 101 63.4
Sc01g0002960 Simmondsia chinensis HOM05D000282 ORTHO05D004791 1.7e-26 122.5 99 64.6
Manes.01G249000 Manihot esculenta HOM05D000282 ORTHO05D004791 2.3e-26 122.1 99 63.6
TWI81G0677 Tripterygium wilfordii HOM05D000282 ORTHO05D004791 2.3e-26 122.1 101 63.4
Ah.05g179880 Amaranthus hybridus HOM05D000282 ORTHO05D004791 3.0e-26 121.7 99 63.6
BolC4t24670H Brassica oleracea HOM05D000282 ORTHO05D013245 3.0e-26 121.7 93 71.0
ClCG05G001100 Citrullus lanatus HOM05D000282 ORTHO05D004791 3.0e-26 121.7 99 63.6
Duzib133G0471 Durio zibethinus HOM05D000282 ORTHO05D004791 3.0e-26 121.7 99 64.6
Duzib138G0443 Durio zibethinus HOM05D000282 ORTHO05D004791 3.0e-26 121.7 99 64.6
CSS0036656 Camellia sinensis var. sinensis HOM05D000282 ORTHO05D004791 3.9e-26 121.3 101 62.4
CiPaw.01G072200 Carya illinoinensis HOM05D000282 ORTHO05D004791 3.9e-26 121.3 98 64.3
MD01G1076100 Malus domestica HOM05D000282 ORTHO05D004791 3.9e-26 121.3 99 64.6
Potri.014G094900 Populus trichocarpa HOM05D000282 ORTHO05D004791 3.9e-26 121.3 101 64.4
Cpa.g.sc194.8 Carica papaya HOM05D000282 ORTHO05D004791 5.1e-26 120.9 99 62.6
Nn3g19105 Nelumbo nucifera HOM05D000282 ORTHO05D004791 5.1e-26 120.9 99 63.6
BcaB02g08149 Brassica carinata HOM05D000282 ORTHO05D013245 6.6e-26 120.6 101 67.3
Ciclev10019995m.g Citrus clementina HOM05D000282 ORTHO05D004791 6.6e-26 120.6 99 63.6
Actinidia10105 Actinidia chinensis HOM05D000282 ORTHO05D004791 8.6e-26 120.2 98 63.3
MD07G1145100 Malus domestica HOM05D000282 ORTHO05D004791 8.6e-26 120.2 99 63.6
Manes.05G025900 Manihot esculenta HOM05D000282 ORTHO05D004791 8.6e-26 120.2 98 63.3
Thecc.01G347400 Theobroma cacao HOM05D000282 ORTHO05D004791 8.6e-26 120.2 99 63.6
Hma1.2p1_0077F.1_g039810 Hydrangea macrophylla HOM05D000282 ORTHO05D004791 1.1e-25 119.8 99 62.6
Prupe.8G052800 Prunus persica HOM05D000282 ORTHO05D004791 1.1e-25 119.8 99 63.6
TWI60G1292 Tripterygium wilfordii HOM05D000282 ORTHO05D004791 1.1e-25 119.8 97 63.9
CSS0024011 Camellia sinensis var. sinensis HOM05D000282 ORTHO05D004791 1.5e-25 119.4 99 62.6
COL.COLO4_06331 Corchorus olitorius HOM05D000282 ORTHO05D004791 1.5e-25 119.4 99 63.6
LjContig00049g0003003 Lotus japonicus HOM05D000282 ORTHO05D004791 1.5e-25 119.4 97 64.9
Prupe.1G559600 Prunus persica HOM05D000282 ORTHO05D004791 1.5e-25 119.4 101 62.4
Dinv32555 Davidia involucrata HOM05D000282 ORTHO05D004791 1.9e-25 119.0 99 62.6
Gohir.D11G099800 Gossypium hirsutum HOM05D000282 ORTHO05D004791 1.9e-25 119.0 99 65.7
Potri.002G167800 Populus trichocarpa HOM05D000282 ORTHO05D004791 1.9e-25 119.0 101 63.4
QL04p058632 Quercus lobata HOM05D000282 ORTHO05D004791 1.9e-25 119.0 96 64.6
QL04p059427 Quercus lobata HOM05D000282 ORTHO05D004791 1.9e-25 119.0 96 64.6
vmacro13193 Vaccinium macrocarpon HOM05D000282 ORTHO05D004791 1.9e-25 119.0 97 63.9
Lj1g0019806 Lotus japonicus HOM05D000282 ORTHO05D004791 2.5e-25 118.6 98 63.3
ATR1100G023 Amborella trichopoda HOM05D000282 ORTHO05D004791 3.3e-25 118.2 98 62.2
EL10Ac1g00313 Beta vulgaris HOM05D000282 ORTHO05D004791 3.3e-25 118.2 99 61.6
AUR62004452 Chenopodium quinoa HOM05D000282 ORTHO05D004791 3.3e-25 118.2 99 61.6
AUR62023497 Chenopodium quinoa HOM05D000282 ORTHO05D004791 3.3e-25 118.2 99 61.6
Atru.chr5.622 Acer truncatum HOM05D000282 ORTHO05D004791 4.3e-25 117.9 98 62.2
Gohir.A11G094800 Gossypium hirsutum HOM05D000282 ORTHO05D004791 4.3e-25 117.9 99 64.6
Gorai.007G106000 Gossypium raimondii HOM05D000282 ORTHO05D004791 4.3e-25 117.9 99 64.6
Prupe.2G100900 Prunus persica HOM05D000282 ORTHO05D004791 4.3e-25 117.9 99 62.6
SGA_v2.0_scaffold48G17909 Striga asiatica HOM05D000282 ORTHO05D004791 4.3e-25 117.9 101 61.4
Rhsim01G0169600 Rhododendron simsii HOM05D000282 ORTHO05D004791 5.6e-25 117.5 101 62.4
MBI07_g20449_MAGBIO Magnolia biondii HOM05D000282 ORTHO05D004791 9.5e-25 116.7 99 61.6
vmacro22518 Vaccinium macrocarpon HOM05D000282 ORTHO05D004791 9.5e-25 116.7 97 61.9
FvH4_7g15920 Fragaria vesca HOM05D000282 ORTHO05D004791 1.2e-24 116.3 99 61.6
FAN01G1869 Fragaria x ananassa HOM05D000282 ORTHO05D004791 1.2e-24 116.3 99 61.6
FAN03G1170 Fragaria x ananassa HOM05D000282 ORTHO05D004791 1.2e-24 116.3 99 61.6
FAN06G3555 Fragaria x ananassa HOM05D000282 ORTHO05D004791 1.2e-24 116.3 99 61.6
FAN06G5129 Fragaria x ananassa HOM05D000282 ORTHO05D004791 1.2e-24 116.3 99 61.6
FAN10G2511 Fragaria x ananassa HOM05D000282 ORTHO05D004791 1.2e-24 116.3 99 61.6
FAN10G4217 Fragaria x ananassa HOM05D000282 ORTHO05D004791 1.2e-24 116.3 99 61.6
Gohir.D12G114100 Gossypium hirsutum HOM05D000282 ORTHO05D004791 1.2e-24 116.3 98 63.3
Gorai.008G123600 Gossypium raimondii HOM05D000282 ORTHO05D004791 1.2e-24 116.3 98 63.3
RcHm_v2.0_Chr1g0358791 Rosa chinensis HOM05D000282 ORTHO05D004791 1.2e-24 116.3 99 61.6
Ca_09494_v3 Cicer arietinum L. HOM05D000282 ORTHO05D004791 1.6e-24 115.9 97 61.9
Gohir.A12G110800 Gossypium hirsutum HOM05D000282 ORTHO05D004791 1.6e-24 115.9 98 63.3
Nitab4.5_0004750g0010 Nicotiana tabacum HOM05D000282 ORTHO05D004791 1.6e-24 115.9 101 61.4
PSO384G3855 Papaver somniferum HOM05D000282 ORTHO05D004791 1.6e-24 115.9 97 60.8
PSO713G0028 Papaver somniferum HOM05D000282 ORTHO05D004791 1.6e-24 115.9 97 60.8
ATR0069G056 Amborella trichopoda HOM05D000282 ORTHO05D004791 2.1e-24 115.5 97 61.9
SalBow3G2106 Salvia bowleyana HOM05D000282 ORTHO05D004791 2.8e-24 115.2 99 60.6
CAN.G352.6 Capsicum annuum HOM05D000282 ORTHO05D004791 3.6e-24 114.8 101 60.4
Medtr7g117050 Medicago truncatula HOM05D000282 ORTHO05D004791 3.6e-24 114.8 97 60.8
Nn1g01799 Nelumbo nucifera HOM05D000282 ORTHO05D004791 3.6e-24 114.8 98 61.2
Sopen03g030510 Solanum pennellii HOM05D000282 ORTHO05D004791 3.6e-24 114.8 101 60.4
PGSC0003DMG400015180 Solanum tuberosum HOM05D000282 ORTHO05D004791 3.6e-24 114.8 101 60.4
Cc04_g10460 Coffea canephora HOM05D000282 ORTHO05D004791 4.7e-24 114.4 99 59.6
TAR375G0782 Trochodendron aralioides HOM05D000282 ORTHO05D004791 4.7e-24 114.4 98 60.2
CDE02G4105 Ceratophyllum demersum HOM05D000282 ORTHO05D004791 6.2e-24 114.0 101 59.4
Nitab4.5_0002855g0020 Nicotiana tabacum HOM05D000282 ORTHO05D004791 6.2e-24 114.0 99 59.6
TPR.G4706 Trifolium pratense HOM05D000282 ORTHO05D004791 6.2e-24 114.0 97 59.8
Psat3g003120 Pisum sativum HOM05D000282 ORTHO05D004791 8.1e-24 113.6 97 59.8
Peaxi162Scf00089g00639 Petunia axillaris HOM05D000282 ORTHO05D004791 1.1e-23 113.2 101 60.4
Psat0s1524g0080 Pisum sativum HOM05D000282 ORTHO05D013245 1.1e-23 113.2 97 59.8
Aqoxy7G00158 Aquilegia oxysepala HOM05D000282 ORTHO05D004791 1.4e-23 112.8 99 62.6
Solyc03g111380.3 Solanum lycopersicum HOM05D000282 ORTHO05D004791 1.4e-23 112.8 101 59.4
Oeu045482.2 Olea europaea HOM05D000282 ORTHO05D004791 1.8e-23 112.5 101 58.4
Lalb_Chr04g0261761 Lupinus albus HOM05D000282 ORTHO05D004791 2.3e-23 112.1 97 59.8
HanXRQChr15g0472351 Helianthus annuus HOM05D000282 ORTHO05D004791 3.1e-23 111.7 99 59.6
TAR636G2021 Trochodendron aralioides HOM05D000282 ORTHO05D004791 3.1e-23 111.7 98 59.2
CDE09G0145 Ceratophyllum demersum HOM05D000282 ORTHO05D004791 4.0e-23 111.3 101 57.4
HanXRQChr04g0120991 Helianthus annuus HOM05D000282 ORTHO05D004791 4.0e-23 111.3 101 58.4
MBI06_g32762_MAGBIO Magnolia biondii HOM05D000282 ORTHO05D004791 4.0e-23 111.3 101 58.4
Migut.G00954 Erythranthe guttata HOM05D000282 ORTHO05D004791 8.9e-23 110.2 97 59.8
Lj2C48T5 Lonicera japonica HOM05D000282 ORTHO05D004791 1.2e-22 109.8 99 58.6
Lsat_1_v5_gn_7_1921 Lactuca sativa HOM05D000282 ORTHO05D004791 4.4e-22 107.8 101 58.4
HPP92_012797 Vanilla planifolia HOM05D000282 ORTHO05D004791 5.8e-22 107.5 101 56.4
VMungo0540G0505 Vigna mungo HOM05D000282 ORTHO05D004791 5.8e-22 107.5 96 59.4
Lj9A592T68 Lonicera japonica HOM05D000282 ORTHO05D004791 7.6e-22 107.1 99 58.6
Glyma.19G253300 Glycine max HOM05D000282 ORTHO05D004791 1.3e-21 106.3 96 58.3
Glyma.03G255800 Glycine max HOM05D000282 ORTHO05D004791 1.7e-21 105.9 97 58.8
Nitab4.5_0003282g0050 Nicotiana tabacum HOM05D000282 ORTHO05D004791 4.9e-21 104.4 92 60.9
Pp3c22_2850 Physcomitrium patens HOM05D000282 ORTHO05D004791 4.9e-21 104.4 98 55.1
ECA236G0122 Erigeron canadensis HOM05D000282 ORTHO05D004791 6.4e-21 104.0 101 54.5
Sabra14G0069500 Salix brachista HOM05D000282 ORTHO05D004791 8.4e-21 103.6 136 47.8
DCAR_006965 Daucus carota HOM05D000282 ORTHO05D004791 1.1e-20 103.2 97 55.7
Pp3c19_7110 Physcomitrium patens HOM05D000282 ORTHO05D004791 1.1e-20 103.2 98 54.1
AagrBONN_evm.TU.Sc2ySwM_228.3904 Anthoceros agrestis HOM05D000282 ORTHO05D004791 1.4e-20 102.8 98 52.0
Mapoly0046s0055 Marchantia polymorpha HOM05D000282 ORTHO05D004791 1.4e-20 102.8 97 53.6
Phvul.006G110500 Phaseolus vulgaris HOM05D000282 ORTHO05D004791 5.4e-20 100.9 96 56.2
CiPaw.02G038600 Carya illinoinensis HOM05D000282 ORTHO05D004791 1.6e-19 99.4 55 85.5
Lj7C504T3 Lonicera japonica HOM05D000282 ORTHO05D004791 2.7e-19 98.6 99 56.6
Zm00001eb345620 Zea mays HOM05D000282 ORTHO05D004791 2.7e-19 98.6 93 58.1
Os05g0156600 Oryza sativa ssp. japonica HOM05D000282 ORTHO05D004791 4.6e-19 97.8 93 57.0
unitig_8.g4945 Utricularia gibba HOM05D000282 ORTHO05D004791 7.8e-19 97.1 88 59.1
Zm00001eb282650 Zea mays HOM05D000282 ORTHO05D004791 7.8e-19 97.1 93 57.0
SMO118G0144 Selaginella moellendorffii HOM05D000282 ORTHO05D004791 1.7e-18 95.9 87 57.5
SHI16878 Sapria himalayana HOM05D000282 ORTHO05D004791 5.1e-18 94.4 55 81.8
arahy.Tifrunner.gnm1.ann1.GE9U5Y Arachis hypogaea HOM05D000282 ORTHO05D004791 8.6e-18 93.6 55 78.2
arahy.Tifrunner.gnm1.ann1.HP7BC0 Arachis hypogaea HOM05D000282 ORTHO05D004791 8.6e-18 93.6 55 78.2
arahy.Tifrunner.gnm1.ann1.LPHW23 Arachis hypogaea HOM05D000282 ORTHO05D004791 8.6e-18 93.6 55 78.2
arahy.Tifrunner.gnm1.ann1.ZP6T3L Arachis hypogaea HOM05D000282 ORTHO05D004791 8.6e-18 93.6 55 78.2
Lsat_1_v5_gn_5_84941 Lactuca sativa HOM05D000282 ORTHO05D004791 1.5e-17 92.8 96 51.0
MBI07_g09923_MAGBIO Magnolia biondii HOM05D000282 ORTHO05D004791 2.5e-17 92.0 142 42.3
arahy.Tifrunner.gnm1.ann1.7V87L9 Arachis hypogaea HOM05D000282 ORTHO05D004791 4.3e-17 91.3 55 76.4
PGR031G0774 Punica granatum HOM05D000282 ORTHO05D004791 1.2e-16 89.7 91 54.9
HanXRQChr17g0562591 Helianthus annuus HOM05D000282 ORTHO05D004791 1.8e-15 85.9 100 47.0
Nitab4.5_0002062g0030 Nicotiana tabacum HOM05D000282 ORTHO05D004791 4.0e-15 84.7 80 55.0
CBR_g39634 Chara braunii HOM05D000019 ORTHO05D000002 3.8e-13 78.2 55 67.3
PRCOL_00004163 Prasinoderma coloniale HOM05D000282 ORTHO05D004791 1.4e-12 76.3 57 63.2
MCO13G304 Micromonas commoda HOM05D000282 ORTHO05D004791 7.1e-12 73.9 95 43.2
MBI19_g10806_MAGBIO Magnolia biondii HOM05D000282 ORTHO05D004791 1.2e-11 73.2 61 59.0
DCAR_016073 Daucus carota HOM05D000282 ORTHO05D013245 2.1e-11 72.4 101 44.6
DCAR_016076 Daucus carota HOM05D000282 ORTHO05D013245 3.5e-11 71.6 93 47.3
BcaC02g10243 Brassica carinata HOM05D000282 ORTHO05D013245 4.8e-08 61.2 58 58.6
MBI19_g33012_MAGBIO Magnolia biondii HOM05D000282 ORTHO05D004791 6.9e-07 57.4 32 84.4


User provided reference genes

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