Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A03p68910 Brassica napus HOM05D002001 ORTHO05D024500 1.8e-53 212.2 101 100.0
BraSC39t46173Z Brassica rapa HOM05D002001 ORTHO05D024500 9.0e-45 183.3 88 100.0
C04p25610 Brassica napus HOM05D002001 ORTHO05D024500 1.4e-37 159.5 98 82.7
BolC4t24248H Brassica oleracea HOM05D002001 ORTHO05D024500 1.8e-32 142.5 89 83.1
C05p50840 Brassica napus HOM05D002001 ORTHO05D024500 2.4e-29 132.1 82 82.9
Nitab4.5_0000667g0210 Nicotiana tabacum HOM05D002001 ORTHO05D004100 5.9e-20 100.9 72 65.3
Lj5C255T12 Lonicera japonica HOM05D002001 ORTHO05D004100 1.3e-19 99.8 75 68.0
Solyc07g049480.3 Solanum lycopersicum HOM05D002001 ORTHO05D004100 1.7e-19 99.4 63 73.0
Sopen07g024830 Solanum pennellii HOM05D002001 ORTHO05D004100 1.7e-19 99.4 63 73.0
Sabra17G0068000 Salix brachista HOM05D002001 ORTHO05D004100 2.9e-19 98.6 61 77.0
vmacro19877 Vaccinium macrocarpon HOM05D002001 ORTHO05D004100 2.9e-19 98.6 70 68.6
BcaB04g20308 Brassica carinata HOM05D002001 ORTHO05D004100 3.8e-19 98.2 50 94.0
BcaC09g49340 Brassica carinata HOM05D002001 ORTHO05D004100 3.8e-19 98.2 50 94.0
A01p29840 Brassica napus HOM05D002001 ORTHO05D004100 3.8e-19 98.2 50 94.0
C01p37690 Brassica napus HOM05D002001 ORTHO05D004100 3.8e-19 98.2 50 94.0
BolC1t03733H Brassica oleracea HOM05D002001 ORTHO05D004100 3.8e-19 98.2 50 94.0
BraA01t03112Z Brassica rapa HOM05D002001 ORTHO05D004100 3.8e-19 98.2 50 94.0
CARHR052150 Cardamine hirsuta HOM05D002001 ORTHO05D004100 3.8e-19 98.2 50 94.0
Ciclev10000468m.g Citrus clementina HOM05D002001 ORTHO05D004100 3.8e-19 98.2 50 94.0
DCAR_006689 Daucus carota HOM05D002001 ORTHO05D004100 3.8e-19 98.2 63 73.0
ECA236G3872 Erigeron canadensis HOM05D002001 ORTHO05D004100 3.8e-19 98.2 63 73.0
Lsat_1_v5_gn_7_79181 Lactuca sativa HOM05D002001 ORTHO05D004100 3.8e-19 98.2 63 73.0
Lj5A255T82 Lonicera japonica HOM05D002001 ORTHO05D004100 3.8e-19 98.2 63 73.0
Manes.10G123600 Manihot esculenta HOM05D002001 ORTHO05D004100 3.8e-19 98.2 50 94.0
Oeu034119.1 Olea europaea HOM05D002001 ORTHO05D004100 3.8e-19 98.2 63 73.0
Oeu064618.2 Olea europaea HOM05D002001 ORTHO05D004100 3.8e-19 98.2 63 73.0
Sp2g03500 Schrenkiella parvula HOM05D002001 ORTHO05D004100 3.8e-19 98.2 50 94.0
THA.LOC104819173 Tarenaya hassleriana HOM05D002001 ORTHO05D004100 3.8e-19 98.2 50 94.0
TWI14G0623 Tripterygium wilfordii HOM05D002001 ORTHO05D004100 3.8e-19 98.2 50 94.0
Actinidia26158 Actinidia chinensis HOM05D002001 ORTHO05D004100 5.0e-19 97.8 63 73.0
CDE01G0324 Ceratophyllum demersum HOM05D002001 ORTHO05D004100 5.0e-19 97.8 63 73.0
CDE12G0623 Ceratophyllum demersum HOM05D002001 ORTHO05D004100 5.0e-19 97.8 63 73.0
Dinv01850 Davidia involucrata HOM05D002001 ORTHO05D004100 5.0e-19 97.8 63 73.0
Dinv24311 Davidia involucrata HOM05D002001 ORTHO05D004100 5.0e-19 97.8 63 73.0
Thhalv10024010m.g Eutrema salsugineum HOM05D002001 ORTHO05D004100 5.0e-19 97.8 57 80.7
MBI04_g30788_MAGBIO Magnolia biondii HOM05D002001 ORTHO05D004100 5.0e-19 97.8 63 73.0
PSO063G5226 Papaver somniferum HOM05D002001 ORTHO05D004100 5.0e-19 97.8 63 73.0
Peaxi162Scf00003g03948 Petunia axillaris HOM05D002001 ORTHO05D004100 5.0e-19 97.8 63 73.0
Rhsim10G0102800 Rhododendron simsii HOM05D002001 ORTHO05D004100 5.0e-19 97.8 63 73.0
SalBow8G1128 Salvia bowleyana HOM05D005536 ORTHO05D004100 5.0e-19 97.8 63 73.0
PGSC0003DMG400000682 Solanum tuberosum HOM05D002001 ORTHO05D004100 5.0e-19 97.8 63 73.0
GSVIVG01023351001 Vitis vinifera HOM05D002001 ORTHO05D004100 5.0e-19 97.8 63 73.0
GSVIVG01023380001 Vitis vinifera HOM05D002001 ORTHO05D004100 5.0e-19 97.8 63 73.0
Zm00001eb210600 Zea mays HOM05D002001 ORTHO05D004100 5.0e-19 97.8 57 80.7
Atru.chr10.1555 Acer truncatum HOM05D002001 ORTHO05D004100 6.5e-19 97.4 50 92.0
Aqoxy7G01152 Aquilegia oxysepala HOM05D002001 ORTHO05D004100 6.5e-19 97.4 63 71.4
Aqoxy7G01153 Aquilegia oxysepala HOM05D002001 ORTHO05D004100 6.5e-19 97.4 63 71.4
Eucgr.G00400 Eucalyptus grandis HOM05D002001 ORTHO05D004100 6.5e-19 97.4 63 73.0
Eucgr.G00404 Eucalyptus grandis HOM05D002001 ORTHO05D004100 6.5e-19 97.4 63 73.0
Nitab4.5_0007277g0010 Nicotiana tabacum HOM05D002001 ORTHO05D004100 6.5e-19 97.4 57 80.7
PGR042G3798 Punica granatum HOM05D002001 ORTHO05D004100 6.5e-19 97.4 63 73.0
SMO270G0079 Selaginella moellendorffii HOM05D002001 ORTHO05D004100 6.5e-19 97.4 63 73.0
SMO306G0001 Selaginella moellendorffii HOM05D002001 ORTHO05D004100 6.5e-19 97.4 63 73.0
Zm00001eb064770 Zea mays HOM05D002001 ORTHO05D004100 6.5e-19 97.4 57 80.7
Aa31sc291G30 Aethionema arabicum HOM05D002001 ORTHO05D004100 8.5e-19 97.1 50 92.0
Ah.01g004900 Amaranthus hybridus HOM05D002001 ORTHO05D004100 8.5e-19 97.1 63 71.4
COL.COLO4_11757 Corchorus olitorius HOM05D002001 ORTHO05D004100 8.5e-19 97.1 50 92.0
Gohir.A13G036300 Gossypium hirsutum HOM05D002001 ORTHO05D004100 8.5e-19 97.1 50 92.0
Gohir.D13G034600 Gossypium hirsutum HOM05D002001 ORTHO05D004100 8.5e-19 97.1 50 92.0
Gorai.013G039200 Gossypium raimondii HOM05D002001 ORTHO05D004100 8.5e-19 97.1 50 92.0
Os03g0852900 Oryza sativa ssp. japonica HOM05D002001 ORTHO05D004100 8.5e-19 97.1 63 71.4
Potri.017G076000 Populus trichocarpa HOM05D002001 ORTHO05D004100 8.5e-19 97.1 50 92.0
Potri.017G076132 Populus trichocarpa HOM05D002001 ORTHO05D004100 8.5e-19 97.1 50 92.0
Rhsim10G0102700 Rhododendron simsii HOM05D002001 ORTHO05D004100 8.5e-19 97.1 63 71.4
Sabra17G0068100 Salix brachista HOM05D002001 ORTHO05D004100 8.5e-19 97.1 65 69.2
Atru.chr10.1556 Acer truncatum HOM05D002001 ORTHO05D004100 1.1e-18 96.7 50 92.0
Actinidia06465 Actinidia chinensis HOM05D002001 ORTHO05D004100 1.1e-18 96.7 63 71.4
Cc02_g22840 Coffea canephora HOM05D002001 ORTHO05D004100 1.1e-18 96.7 50 92.0
Duzib132G0735 Durio zibethinus HOM05D002001 ORTHO05D004100 1.1e-18 96.7 50 90.0
Migut.B00809 Erythranthe guttata HOM05D002001 ORTHO05D004100 1.1e-18 96.7 63 71.4
Eucgr.G00401 Eucalyptus grandis HOM05D002001 ORTHO05D004100 1.1e-18 96.7 50 92.0
HanXRQChr17g0559661 Helianthus annuus HOM05D002001 ORTHO05D004100 1.1e-18 96.7 63 71.4
MBI04_g30789_MAGBIO Magnolia biondii HOM05D002001 ORTHO05D004100 1.1e-18 96.7 63 71.4
Nn1g09279 Nelumbo nucifera HOM05D002001 ORTHO05D004100 1.1e-18 96.7 63 71.4
SHI08868 Sapria himalayana HOM05D002001 ORTHO05D004100 1.1e-18 96.7 57 78.9
Sc14g0007300 Simmondsia chinensis HOM05D002001 ORTHO05D004100 1.1e-18 96.7 63 71.4
SGA_v2.0_scaffold92G28301 Striga asiatica HOM05D002001 ORTHO05D004100 1.1e-18 96.7 63 71.4
CANSAT11G0528 Cannabis sativa HOM05D002001 ORTHO05D004100 1.4e-18 96.3 57 78.9
Ciclev10000467m.g Citrus clementina HOM05D002001 ORTHO05D004100 1.4e-18 96.3 50 92.0
SEGI_00225 Sequoiadendron giganteum HOM05D002001 ORTHO05D004100 1.4e-18 96.3 65 69.2
SEGI_19065 Sequoiadendron giganteum HOM05D002001 ORTHO05D004100 1.4e-18 96.3 63 71.4
Thecc.02G090300 Theobroma cacao HOM05D002001 ORTHO05D004100 1.4e-18 96.3 50 90.0
vmacro19878 Vaccinium macrocarpon HOM05D002001 ORTHO05D004100 1.4e-18 96.3 63 71.4
FAN04G1414 Fragaria x ananassa HOM05D002001 ORTHO05D004100 1.9e-18 95.9 50 92.0
Prupe.1G574800 Prunus persica HOM05D002001 ORTHO05D004100 1.9e-18 95.9 50 92.0
Prupe.I006100 Prunus persica HOM05D002001 ORTHO05D004100 1.9e-18 95.9 50 92.0
RcHm_v2.0_Chr7g0220981 Rosa chinensis HOM05D002001 ORTHO05D004100 1.9e-18 95.9 50 92.0
AL2G15430 Arabidopsis lyrata HOM05D002001 ORTHO05D004100 2.5e-18 95.5 50 90.0
AT1G61010 Arabidopsis thaliana HOM05D002001 ORTHO05D004100 2.5e-18 95.5 50 90.0
MSTRG.20312 Avicennia marina HOM05D002001 ORTHO05D004100 2.5e-18 95.5 63 69.8
Carub.0002s0418 Capsella rubella HOM05D002001 ORTHO05D004100 2.5e-18 95.5 50 90.0
CAN.G529.48 Capsicum annuum HOM05D002001 ORTHO05D004100 2.5e-18 95.5 57 77.2
MD08G1237400 Malus domestica HOM05D002001 ORTHO05D004100 2.5e-18 95.5 50 90.0
Hund06801 Selenicereus undatus HOM05D002001 ORTHO05D004100 2.5e-18 95.5 63 69.8
TAR629G1401 Trochodendron aralioides HOM05D002001 ORTHO05D004100 2.5e-18 95.5 63 71.4
TAR629G1852 Trochodendron aralioides HOM05D002001 ORTHO05D004100 2.5e-18 95.5 63 71.4
HPP92_015169 Vanilla planifolia HOM05D002001 ORTHO05D004100 2.5e-18 95.5 50 90.0
Duzib052G0396 Durio zibethinus HOM05D002001 ORTHO05D004100 3.2e-18 95.1 50 90.0
Ah.02g126190 Amaranthus hybridus HOM05D002001 ORTHO05D004100 4.2e-18 94.7 63 68.3
ATR0568G050 Amborella trichopoda HOM05D002001 ORTHO05D004100 4.2e-18 94.7 63 69.8
ATR0568G179 Amborella trichopoda HOM05D002001 ORTHO05D004100 4.2e-18 94.7 63 69.8
AagrBONN_evm.TU.Sc2ySwM_344.449 Anthoceros agrestis HOM05D002001 ORTHO05D004100 4.2e-18 94.7 63 68.3
EL10Ac9g22038 Beta vulgaris HOM05D002001 ORTHO05D004100 4.2e-18 94.7 63 68.3
AUR62011671 Chenopodium quinoa HOM05D002001 ORTHO05D004100 4.2e-18 94.7 63 68.3
AUR62016494 Chenopodium quinoa HOM05D002001 ORTHO05D004100 4.2e-18 94.7 63 68.3
arahy.Tifrunner.gnm1.ann1.97GRLX Arachis hypogaea HOM05D002001 ORTHO05D004100 5.5e-18 94.4 50 90.0
arahy.Tifrunner.gnm1.ann1.GST58F Arachis hypogaea HOM05D002001 ORTHO05D004100 5.5e-18 94.4 50 90.0
Haze_01809 Corylus avellana HOM05D002001 ORTHO05D004100 7.2e-18 94.0 50 90.0
MD15G1429300 Malus domestica HOM05D002001 ORTHO05D004100 7.2e-18 94.0 50 88.0
Psat3g090080 Pisum sativum HOM05D002001 ORTHO05D004100 7.2e-18 94.0 50 88.0
QL02p098463 Quercus lobata HOM05D002001 ORTHO05D004100 7.2e-18 94.0 50 90.0
QL02p099792 Quercus lobata HOM05D002001 ORTHO05D004100 7.2e-18 94.0 50 90.0
CBR_g31441 Chara braunii HOM05D002001 ORTHO05D004100 9.4e-18 93.6 56 76.8
FAN03G1556 Fragaria x ananassa HOM05D002001 ORTHO05D004100 9.4e-18 93.6 50 90.0
Potri.017G076300 Populus trichocarpa HOM05D002001 ORTHO05D004100 9.4e-18 93.6 50 88.0
unitig_22.g6110 Utricularia gibba HOM05D002001 ORTHO05D004100 9.4e-18 93.6 63 68.3
FAN18G1953 Fragaria x ananassa HOM05D000315 ORTHO05D004100 1.2e-17 93.2 50 90.0
Medtr2g006180 Medicago truncatula HOM05D002001 ORTHO05D004100 1.2e-17 93.2 50 88.0
Oeu023418.1 Olea europaea HOM05D002001 ORTHO05D004100 1.2e-17 93.2 63 68.3
CiPaw.06G144700 Carya illinoinensis HOM05D002001 ORTHO05D004100 1.6e-17 92.8 50 88.0
Ca_00055_v3 Cicer arietinum L. HOM05D002001 ORTHO05D004100 1.6e-17 92.8 50 86.0
ClCG11G013430 Citrullus lanatus HOM05D002001 ORTHO05D004100 1.6e-17 92.8 50 88.0
Mapoly0069s0028 Marchantia polymorpha HOM05D002001 ORTHO05D004100 1.6e-17 92.8 63 69.8
RcHm_v2.0_Chr4g0399131 Rosa chinensis HOM05D002001 ORTHO05D004100 1.6e-17 92.8 50 88.0
Sed0012035 Sechium edule HOM05D002001 ORTHO05D004100 1.6e-17 92.8 50 88.0
TPR.G35593 Trifolium pratense HOM05D002001 ORTHO05D004100 1.6e-17 92.8 50 86.0
CsaV3_5G029960 Cucumis sativus L. HOM05D002001 ORTHO05D004100 2.7e-17 92.0 50 88.0
Lalb_Chr20g0123631 Lupinus albus HOM05D002001 ORTHO05D004100 2.7e-17 92.0 50 84.0
Pp3c5_23920 Physcomitrium patens HOM05D002001 ORTHO05D004100 2.7e-17 92.0 63 68.3
Pp3c6_3520 Physcomitrium patens HOM05D002001 ORTHO05D004100 2.7e-17 92.0 63 68.3
Glyma.08G188800 Glycine max HOM05D002001 ORTHO05D004100 3.6e-17 91.7 50 86.0
Lj6g0014440 Lotus japonicus HOM05D002001 ORTHO05D004100 3.6e-17 91.7 50 86.0
Phvul.006G217100 Phaseolus vulgaris HOM05D002001 ORTHO05D004100 3.6e-17 91.7 50 86.0
VMungo0540G2019 Vigna mungo HOM05D002001 ORTHO05D004100 3.6e-17 91.7 50 86.0
FvH4_4g07000 Fragaria vesca HOM05D002001 ORTHO05D004100 1.8e-16 89.4 50 86.0
FAN07G2305 Fragaria x ananassa HOM05D002001 ORTHO05D004100 1.8e-16 89.4 50 86.0
FAN12G2583 Fragaria x ananassa HOM05D002001 ORTHO05D004100 1.8e-16 89.4 50 86.0
FAN17G1518 Fragaria x ananassa HOM05D002001 ORTHO05D004100 1.8e-16 89.4 50 86.0
FAN22G0816 Fragaria x ananassa HOM05D002001 ORTHO05D004100 1.8e-16 89.4 50 86.0
CiPaw.06G144400 Carya illinoinensis HOM05D002001 ORTHO05D004100 2.3e-16 89.0 50 84.0
GSVIVG01023355001 Vitis vinifera HOM05D002001 ORTHO05D004100 2.3e-16 89.0 63 66.7
CSS0047146 Camellia sinensis var. sinensis HOM05D002001 ORTHO05D004100 5.9e-12 74.3 86 48.8
Haze_26930 Corylus avellana HOM05D002001 ORTHO05D004100 2.9e-11 72.0 57 57.9
Cpa.g.sc118.41 Carica papaya HOM05D002001 ORTHO05D004100 1.9e-10 69.3 35 97.1
PRCOL_00001441 Prasinoderma coloniale HOM05D002001 ORTHO05D004100 3.2e-10 68.6 46 65.2
Cre12.g498050 Chlamydomonas reinhardtii HOM05D002001 ORTHO05D004100 7.2e-10 67.4 57 57.9
CsaV3_5G029980 Cucumis sativus L. HOM05D002001 ORTHO05D004100 8.0e-09 63.9 35 88.6
MCO04G421 Micromonas commoda HOM05D002001 ORTHO05D004100 8.8e-08 60.5 44 54.5
Atru.chr6.693 Acer truncatum HOM05D002001 ORTHO05D004100 6.3e-06 54.3 26 88.5


User provided reference genes

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