Expansion plot
Gene family finder
Ks-graphs
Skyline plot
Synteny plot
WGDotplot
Functional clusters
WGMapping
BLAST
Workbench
Integrative Orthology Viewer:
SL10G076410
(Solanum lycopersicum)
Inparalogs
| Organism | Source | Genes | #genes | Details |
|---|---|---|---|---|
| Solanum lycopersicum | Orthologous gene family | SL10G076410 SL10G085310 | 2 |  |
| Anchor point | SL10G085310 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | SL10G085310 SL09G015380 SL10G076410 | 3 | ||
| Tree-based ortholog | SL10G076410 SL09G015380 | 2 |
Orthologs
| Organism | Source | Type | Genes | #genes | Details |
|---|---|---|---|---|---|
| Arabidopsis thaliana | Orthologous gene family | many-to-1 | AT2G38310 | 1 | |
| Anchor point | 1-to-many | AT2G40330 AT5G05440 AT2G38310 | 3 | ||
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | AT2G38310 | 1 | ||
| Tree-based ortholog | many-to-1 | AT2G38310 | 1 | ||
| Brachypodium distachyon | Orthologous gene family | many-to-1 | BD1G16710 | 1 | |
| Anchor point | 1-to-many | BD2G53840 BD2G22510 BD1G16710 | 3 | ||
| Best-Hits-and-Inparalogs(BHI)family | many-to-many | BD1G65130 BD1G16710 | 2 | ||
| Tree-based ortholog | many-to-many | BD1G65130 BD1G16710 BD2G22510 ... | 4 | ||
| Carica papaya | Anchor point | 1-to-1 | CP00005G02190 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | CP00005G02190 | 1 | ||
| Tree-based ortholog | many-to-1 | CP00005G02190 | 1 | ||
| Hordeum vulgare | Best-Hits-and-Inparalogs(BHI)family | many-to-1 | HV50387G00010 | 1 | |
| Tree-based ortholog | many-to-many | HV59669G00010 HV44721G00010 HV50387G00010 | 3 | ||
| Musa acuminata | Orthologous gene family | many-to-many | MA04G10940 MA04G15650 | 2 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-many | MA04G10940 MA04G15650 | 2 | ||
| Tree-based ortholog | many-to-many | MA06G33630 MA10G00270 MA08G21750 ... | 7 | ||
| Oryza sativa ssp. indica | Anchor point | 1-to-many | OSINDICA_03G17340 OSINDICA_01G57850 | 2 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | OSINDICA_01G57850 | 1 | ||
| Tree-based ortholog | many-to-many | OSINDICA_03G17340 OSINDICA_01G57850 | 2 | ||
| Oryza sativa ssp. japonica | Anchor point | 1-to-many | OS05G39580 OS01G61210 OS03G18600 | 3 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | OS03G18600 | 1 | ||
| Tree-based ortholog | many-to-many | OS03G18600 OS05G39580 OS01G61210 | 3 | ||
| Physcomitrella patens | Best-Hits-and-Inparalogs(BHI)family | many-to-many | PP00231G00150 PP00097G00880 PP00052G01150 ... | 4 | |
| Tree-based ortholog | many-to-many | PP00001G01040 PP00052G01150 PP00231G00150 ... | 5 | ||
| Populus trichocarpa | Anchor point | 1-to-many | PT16G12540 PT08G07340 PT06G10410 | 3 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-many | PT06G10410 PT16G12540 | 2 | ||
| Tree-based ortholog | many-to-many | PT06G10410 PT16G12540 | 2 | ||
| Setaria italica | Anchor point | 1-to-many | SI003G21120 SI005G37740 | 2 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | SI003G21120 | 1 | ||
| Tree-based ortholog | many-to-many | SI003G21120 SI005G37740 | 2 | ||
| Sorghum bicolor | Anchor point | 1-to-many | SB09G023180 SB01G038150 | 2 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | SB03G038600 | 1 | ||
| Tree-based ortholog | many-to-many | SB01G038150 SB09G023180 SB03G038600 | 3 | ||
| Vitis vinifera | Anchor point | 1-to-1 | VV08G06790 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | VV13G09870 | 1 | ||
| Tree-based ortholog | many-to-1 | VV13G09870 | 1 | ||
| Zea mays | Anchor point | 1-to-many | ZM01G12630 ZM03G28040 ZM08G32630 | 3 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-many | ZM08G32630 ZM03G28040 | 2 | ||
| Tree-based ortholog | many-to-many | ZM09G22930 ZM01G12630 ZM06G26300 ... | 5 |