Expansion plot
Gene family finder
Ks-graphs
Skyline plot
Synteny plot
WGDotplot
Functional clusters
WGMapping
BLAST
Workbench
Integrative Orthology Viewer:
SI003G32550
(Setaria italica)
Inparalogs
| Organism | Source | Genes | #genes | Details |
|---|---|---|---|---|
| Setaria italica | Tree-based ortholog | SI003G32550 | 1 |  |
| Orthologous gene family | SI001G27540 SI003G32550 SI003G35960 ... | 7 | ||
| Best-Hits-and-Inparalogs(BHI)family | SI003G32550 | 1 |
Orthologs
| Organism | Source | Type | Genes | #genes | Details |
|---|---|---|---|---|---|
| Arabidopsis thaliana | Tree-based ortholog | 1-to-1 | AT1G04110 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | AT1G04110 | 1 | ||
| Brachypodium distachyon | Tree-based ortholog | 1-to-many | BD4G11640 BD1G17320 | 2 | |
| Orthologous gene family | many-to-1 | BD5G24780 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | BD5G18110 | 1 | ||
| Carica papaya | Tree-based ortholog | 1-to-many | CP00029G00430 CP00029G00420 | 2 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | CP00029G00440 CP00029G00430 | 2 | ||
| Hordeum vulgare | Tree-based ortholog | 1-to-many | HV64640G00010 HV41676G00020 HV37829G00010 | 3 | |
| Orthologous gene family | many-to-many | HV1570361G00010 HV37829G00010 HV41676G00020 | 3 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | HV37829G00010 | 1 | ||
| Musa acuminata | Tree-based ortholog | 1-to-many | MA11G03170 MA11G03160 MA02G00500 ... | 5 | |
| Orthologous gene family | many-to-1 | MA11G22210 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | MA11G22210 | 1 | ||
| Oryza sativa ssp. indica | Tree-based ortholog | 1-to-1 | OSINDICA_12G15370 | 1 | |
| Orthologous gene family | many-to-many | OSINDICA_02G42900 OSINDICA_07G40600 OSINDICA_12G15370 | 3 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | OSINDICA_12G15370 | 1 | ||
| Oryza sativa ssp. japonica | Tree-based ortholog | 1-to-many | OS03G31630 OS05G30580 OS10G38080 | 3 | |
| Orthologous gene family | many-to-many | OS02G44590 OS05G30580 OS10G38080 | 3 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | OS12G23980 | 1 | ||
| Ostreococcus lucimarinus | Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | OL15G02560 | 1 | |
| Physcomitrella patens | Tree-based ortholog | 1-to-many | PP00163G00250 PP00007G01310 PP00065G01600 | 3 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | PP00028G00460 PP00019G00980 PP00170G00090 | 3 | ||
| Populus trichocarpa | Tree-based ortholog | 1-to-many | PT03G11870 PT03G11850 PT03G11880 | 3 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | PT01G11370 PT00G01370 PT03G11850 ... | 5 | ||
| Solanum lycopersicum | Tree-based ortholog | 1-to-many | SL08G079990 SL08G080010 SL02G072290 ... | 21 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | SL08G007680 SL08G079900 SL08G079920 ... | 18 | ||
| Sorghum bicolor | Tree-based ortholog | 1-to-many | SB08G017330 SB08G017490 | 2 | |
| Orthologous gene family | many-to-many | SB01G031090 SB08G017330 SB08G017490 | 3 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | SB08G017490 SB08G017330 | 2 | ||
| Vitis vinifera | Tree-based ortholog | 1-to-1 | VV02G07600 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | VV03G04890 | 1 | ||
| Zea mays | Tree-based ortholog | 1-to-1 | ZM10G03780 | 1 | |
| Orthologous gene family | many-to-many | ZM01G01270 ZM01G19550 ZM02G07300 ... | 6 | ||
| Anchor point | N/A | ZM10G03780 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ZM10G03780 | 1 |