Expansion plot
Gene family finder
Ks-graphs
Skyline plot
Synteny plot
WGDotplot
Functional clusters
WGMapping
BLAST
Workbench
Integrative Orthology Viewer:
SI002G21620
(Setaria italica)
Inparalogs
| Organism | Source | Genes | #genes | Details |
|---|---|---|---|---|
| Setaria italica | Tree-based ortholog | SI006G16410 SI002G21620 | 2 |  |
| Orthologous gene family | SI002G21620 | 1 | ||
| Anchor point | SI006G16410 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | SI002G21620 | 1 |
Orthologs
| Organism | Source | Type | Genes | #genes | Details |
|---|---|---|---|---|---|
| Arabidopsis thaliana | Tree-based ortholog | many-to-many | AT1G79700 AT1G16060 | 2 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | AT1G16060 | 1 | ||
| Brachypodium distachyon | Tree-based ortholog | many-to-many | BD3G36820 BD4G30617 | 2 | |
| Anchor point | 1-to-1 | BD4G30617 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | BD4G30617 | 1 | ||
| Carica papaya | Tree-based ortholog | many-to-1 | CP00199G00110 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CP00199G00110 | 1 | ||
| Chlamydomonas reinhardtii | Tree-based ortholog | many-to-1 | CR10G05110 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | CR01G02250 CR01G02270 | 2 | ||
| Hordeum vulgare | Tree-based ortholog | many-to-1 | HV139019G00010 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | HV42148G00020 | 1 | ||
| Musa acuminata | Tree-based ortholog | many-to-1 | MA06G31680 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | MA05G04830 | 1 | ||
| Oryza sativa ssp. indica | Tree-based ortholog | many-to-1 | OSINDICA_08G32380 | 1 | |
| Anchor point | 1-to-1 | OSINDICA_09G19610 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | OSINDICA_09G19610 | 1 | ||
| Oryza sativa ssp. japonica | Tree-based ortholog | many-to-1 | OS08G34360 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | OS06G05340 | 1 | ||
| Ostreococcus lucimarinus | Tree-based ortholog | many-to-many | OL13G01880 OL21G01100 | 2 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | OL03G02210 | 1 | ||
| Physcomitrella patens | Tree-based ortholog | many-to-many | PP00072G00840 PP00014G02400 | 2 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | PP00066G01400 PP00066G01300 PP00131G00760 ... | 4 | ||
| Populus trichocarpa | Tree-based ortholog | many-to-many | PT03G18530 PT00G15320 PT01G04150 | 3 | |
| Anchor point | 1-to-many | PT18G10220 PT01G04150 PT06G17990 | 3 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | PT03G18530 | 1 | ||
| Solanum lycopersicum | Tree-based ortholog | many-to-1 | SL03G117720 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | SL03G117720 | 1 | ||
| Sorghum bicolor | Tree-based ortholog | many-to-1 | SB07G021800 | 1 | |
| Anchor point | 1-to-many | SB07G021800 SB02G025080 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | SB02G025080 | 1 | ||
| Vitis vinifera | Tree-based ortholog | many-to-1 | VV09G01080 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | VV11G07790 | 1 | ||
| Zea mays | Tree-based ortholog | many-to-1 | ZM01G37830 | 1 | |
| Anchor point | 1-to-1 | ZM07G14610 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ZM07G14610 | 1 |