Expansion plot
Gene family finder
Ks-graphs
Skyline plot
Synteny plot
WGDotplot
Functional clusters
WGMapping
BLAST
Workbench
Integrative Orthology Viewer:
PT19G12170
(Populus trichocarpa)
Inparalogs
| Organism | Source | Genes | #genes | Details |
|---|---|---|---|---|
| Populus trichocarpa | Orthologous gene family | PT01G24870 PT01G34160 PT01G40110 ... | 14 |  |
| Best-Hits-and-Inparalogs(BHI)family | PT19G12170 PT19G12430 PT13G15270 | 3 | ||
| Tree-based ortholog | PT19G12430 PT19G12170 | 2 |
Orthologs
| Organism | Source | Type | Genes | #genes | Details |
|---|---|---|---|---|---|
| Arabidopsis thaliana | Best-Hits-and-Inparalogs(BHI)family | many-to-1 | AT2G30210 | 1 | |
| Tree-based ortholog | many-to-many | AT2G30210 AT5G07130 | 2 | ||
| Brachypodium distachyon | Best-Hits-and-Inparalogs(BHI)family | many-to-1 | BD2G53800 | 1 | |
| Tree-based ortholog | many-to-many | BD1G65100 BD2G53800 BD4G44810 | 3 | ||
| Carica papaya | Anchor point | N/A | CP00002G03320 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | CP00019G01210 | 1 | ||
| Tree-based ortholog | many-to-1 | CP00002G03320 | 1 | ||
| Chlamydomonas reinhardtii | Best-Hits-and-Inparalogs(BHI)family | many-to-1 | CR01G06860 | 1 | |
| Tree-based ortholog | many-to-many | CR01G06860 CR03G04690 | 2 | ||
| Hordeum vulgare | Best-Hits-and-Inparalogs(BHI)family | many-to-1 | HV1585379G00010 | 1 | |
| Tree-based ortholog | many-to-many | HV38942G00010 HV1585379G00010 HV38997G00010 | 3 | ||
| Musa acuminata | Best-Hits-and-Inparalogs(BHI)family | many-to-many | MA03G10130 MA09G18350 MA06G36610 | 3 | |
| Tree-based ortholog | many-to-many | MA03G10130 MA09G18350 MA00G14000 ... | 4 | ||
| Oryza sativa ssp. indica | Orthologous gene family | many-to-1 | OSINDICA_01G59860 | 1 | |
| Anchor point | N/A | OSINDICA_12G00860 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | OSINDICA_01G57800 | 1 | ||
| Tree-based ortholog | many-to-many | OSINDICA_03G17400 OSINDICA_01G57800 OSINDICA_11G00180 ... | 5 | ||
| Oryza sativa ssp. japonica | Anchor point | N/A | OS12G01730 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | OS01G61160 | 1 | ||
| Tree-based ortholog | many-to-many | OS03G18640 OS01G61160 OS11G01730 ... | 4 | ||
| Physcomitrella patens | Best-Hits-and-Inparalogs(BHI)family | many-to-1 | PP00077G00890 | 1 | |
| Tree-based ortholog | many-to-many | PP00077G00890 PP00206G00320 | 2 | ||
| Setaria italica | Orthologous gene family | many-to-1 | SI008G01760 | 1 | |
| Anchor point | N/A | SI008G01760 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | SI005G37400 | 1 | ||
| Tree-based ortholog | many-to-many | SI009G45020 SI005G37400 SI008G01760 | 3 | ||
| Solanum lycopersicum | Orthologous gene family | many-to-1 | SL06G050530 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-many | SL06G050530 SL05G052400 SL05G052340 | 3 | ||
| Tree-based ortholog | many-to-1 | SL06G082240 | 1 | ||
| Sorghum bicolor | Orthologous gene family | many-to-many | SB02G000300 SB05G000680 | 2 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | SB03G038550 | 1 | ||
| Tree-based ortholog | many-to-many | SB01G038130 SB03G038550 SB08G000720 ... | 4 | ||
| Vitis vinifera | Anchor point | N/A | VV13G09850 VV06G00980 | 2 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | VV06G00980 | 1 | ||
| Tree-based ortholog | many-to-1 | VV06G00980 | 1 | ||
| Zea mays | Best-Hits-and-Inparalogs(BHI)family | many-to-1 | ZM03G28090 | 1 | |
| Tree-based ortholog | many-to-many | ZM01G12650 ZM03G28090 ZM08G32650 ... | 4 |