Expansion plot
Gene family finder
Ks-graphs
Skyline plot
Synteny plot
WGDotplot
Functional clusters
WGMapping
BLAST
Workbench
Integrative Orthology Viewer:
PT01G23340
(Populus trichocarpa)
Inparalogs
| Organism | Source | Genes | #genes | Details |
|---|---|---|---|---|
| Populus trichocarpa | Orthologous gene family | PT01G23340 | 1 |  |
| Anchor point | PT09G02570 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | PT01G23340 PT09G02570 | 2 | ||
| Tree-based ortholog | PT01G23340 PT09G02570 | 2 |
Orthologs
| Organism | Source | Type | Genes | #genes | Details |
|---|---|---|---|---|---|
| Arabidopsis thaliana | Best-Hits-and-Inparalogs(BHI)family | many-to-many | AT1G07810 AT1G07670 | 2 | |
| Tree-based ortholog | many-to-many | AT1G07810 AT1G07670 | 2 | ||
| Brachypodium distachyon | Anchor point | 1-to-1 | BD1G66150 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | BD1G66150 | 1 | ||
| Tree-based ortholog | many-to-many | BD2G37570 BD1G66150 | 2 | ||
| Carica papaya | Best-Hits-and-Inparalogs(BHI)family | many-to-1 | CP00114G00160 | 1 | |
| Tree-based ortholog | many-to-1 | CP00114G00160 | 1 | ||
| Chlamydomonas reinhardtii | Best-Hits-and-Inparalogs(BHI)family | many-to-1 | CR05G02220 | 1 | |
| Tree-based ortholog | many-to-1 | CR05G02220 | 1 | ||
| Hordeum vulgare | Best-Hits-and-Inparalogs(BHI)family | many-to-1 | HV41079G00010 | 1 | |
| Tree-based ortholog | many-to-many | HV50658G00010 HV41079G00010 | 2 | ||
| Musa acuminata | Anchor point | 1-to-many | MA02G16460 MA10G13720 | 2 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | MA06G15790 | 1 | ||
| Tree-based ortholog | many-to-1 | MA02G16460 | 1 | ||
| Oryza sativa ssp. indica | Anchor point | 1-to-1 | OSINDICA_03G15890 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | OSINDICA_03G15930 | 1 | ||
| Tree-based ortholog | many-to-many | OSINDICA_03G15890 OSINDICA_05G01840 OSINDICA_03G15930 | 3 | ||
| Oryza sativa ssp. japonica | Anchor point | 1-to-1 | OS03G17310 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | OS03G17310 | 1 | ||
| Tree-based ortholog | many-to-many | OS05G02940 OS03G17310 | 2 | ||
| Ostreococcus lucimarinus | Best-Hits-and-Inparalogs(BHI)family | many-to-1 | OL01G04830 | 1 | |
| Tree-based ortholog | many-to-1 | OL01G04830 | 1 | ||
| Physcomitrella patens | Best-Hits-and-Inparalogs(BHI)family | many-to-many | PP00078G00560 PP00248G00110 PP00080G00210 | 3 | |
| Tree-based ortholog | many-to-many | PP00080G00210 PP00248G00110 PP00078G00560 | 3 | ||
| Setaria italica | Anchor point | 1-to-1 | SI009G46130 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | SI009G46130 | 1 | ||
| Tree-based ortholog | many-to-many | SI003G04160 SI009G46130 | 2 | ||
| Solanum lycopersicum | Anchor point | 1-to-1 | SL11G072880 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | SL11G072880 | 1 | ||
| Tree-based ortholog | many-to-1 | SL11G072880 | 1 | ||
| Sorghum bicolor | Anchor point | 1-to-many | SB01G038990 SB09G001850 | 2 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | SB01G038990 | 1 | ||
| Tree-based ortholog | many-to-many | SB09G001850 SB01G038990 | 2 | ||
| Vitis vinifera | Anchor point | 1-to-1 | VV06G04380 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | VV08G02060 | 1 | ||
| Tree-based ortholog | many-to-1 | VV08G02060 | 1 | ||
| Zea mays | Anchor point | 1-to-1 | ZM01G11750 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | ZM09G23490 | 1 | ||
| Tree-based ortholog | many-to-many | ZM08G21140 ZM01G11750 ZM09G23490 | 3 |