PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Eucalyptus grandis	scaffold_10	17	CH_egr_204	6	6	0.000000000000247708
Eucalyptus grandis	scaffold_5	17	CH_egr_18	14	17	6.55533e-34
Eucalyptus grandis	scaffold_5	18	CH_egr_20	14	17	6.55533e-34
Gossypium raimondii	Chr02	17	CH_gra_239	3	3	0.0000213839
Malus domestica	1	17	CH_mdo_145	3	3	0.0000129757
Manihot esculenta	scaffold03741	17	CH_mes_136	3	3	0.0000182034
Oryza sativa ssp. japonica	1	17	CH_osa_136	4	4	0.0000000404498
Prunus persica	scaffold_2	17	CH_ppe_192	4	4	0.000000113811
Prunus persica	scaffold_6	17	CH_ppe_344	3	3	0.0000830911
Prunus persica	scaffold_6	17	CH_ppe_363	4	16	0.000204411
Prunus persica	scaffold_6	17	CH_ppe_193	4	4	0.000000113811
Ricinus communis	29801	17	CH_rco_137	3	3	0.0000031823
Solanum lycopersicum	ch01	17	CH_sly_390	3	4	0.000263337
Solanum lycopersicum	ch10	17	CH_sly_331	3	3	0.0000658944
Vitis vinifera	chr15	17	CH_vvi_270	3	3	0.00001537
Vitis vinifera	chr8	17	CH_vvi_269	3	3	0.00001537
Vitis vinifera	chrUn	17	CH_vvi_268	3	3	0.00001537
Zea mays	3	17	CH_zma_150	3	3	0.0000154035

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V