PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis lyrata	scaffold_6	17	CH_aly_87	2	2	0.000378824
Arabidopsis thaliana	5	17	CH_ath_367	2	2	0.000357122
Brassica rapa	A02	17	CH_bra_275	2	2	0.00074612
Capsella rubella	scaffold_6	17	CH_cru_286	2	2	0.000457945
Chlamydomonas reinhardtii	chromosome_1	17	CH_cre_48	2	2	0.000113759
Chlamydomonas reinhardtii	chromosome_1	19	CH_cre_13	2	2	0.000113759
Citrus sinensis	scaffold00008	17	CH_csi_48	4	7	0.0000000116954
Eucalyptus grandis	scaffold_8	17	CH_egr_289	4	4	0.000000000299266
Malus domestica	13	17	CH_mdo_99	3	3	0.000000703115
Ricinus communis	30131	17	CH_rco_162	3	6	0.0000161895
Vitis vinifera	chr10	17	CH_vvi_193	3	4	0.000000347115

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V