Functional clusters
Information
- Type
- Mapman term
- Identifier
- 29.5.11.4.3.1
- Description
- protein.degradation.ubiquitin.E3.SCF.SKP
Cluster overview
Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
---|---|---|---|---|---|---|
Arabidopsis thaliana | 2 | 17 | CH_ath_279 | 3 | 4 | 0.0000430019 |
Arabidopsis thaliana | 3 | 17 | CH_ath_127 | 4 | 4 | 0.0000000067224 |
Brassica rapa | A07 | 17 | CH_bra_170 | 3 | 4 | 0.0000262811 |
Capsella rubella | scaffold_5 | 17 | CH_cru_3 | 12 | 13 | 2.71049e-32 |
Capsella rubella | scaffold_5 | 18 | CH_cru_3 | 12 | 13 | 2.71049e-32 |
Eucalyptus grandis | scaffold_9 | 17 | CH_egr_290 | 4 | 4 | 0.000000000299266 |
Gossypium raimondii | Chr08 | 17 | CH_gra_211 | 3 | 4 | 0.00000784441 |
Malus domestica | 10 | 17 | CH_mdo_229 | 3 | 10 | 0.000214397 |
Oryza sativa ssp. japonica | 7 | 17 | CH_osa_30 | 7 | 10 | 4.07491e-17 |
Oryza sativa ssp. japonica | 7 | 17 | CH_osa_310 | 3 | 5 | 0.0000781754 |
Oryza sativa ssp. japonica | 8 | 17 | CH_osa_341 | 3 | 6 | 0.000156291 |
Oryza sativa ssp. japonica | 9 | 17 | CH_osa_86 | 6 | 29 | 0.000000000372103 |
Prunus persica | scaffold_2 | 17 | CH_ppe_326 | 3 | 5 | 0.0000529598 |
Solanum lycopersicum | ch10 | 17 | CH_sly_134 | 4 | 5 | 0.0000000111029 |
Solanum lycopersicum | ch11 | 17 | CH_sly_269 | 4 | 20 | 0.0000106985 |
Vitis vinifera | chr3 | 17 | CH_vvi_202 | 3 | 3 | 0.00000072901 |
Zea mays | 2 | 17 | CH_zma_35 | 5 | 10 | 0.000000000187162 |
Functional clusters experiments
Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
---|---|---|---|---|---|---|---|
1 | GO | Primary GO data only. | 2 | 30 | 80 | 0.001 | X |
2 | GO | Primary and orthology projected GO data. | 2 | 30 | 80 | 0.001 | X |
3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | X |
4 | GO | Primary GO data only. | 10 | 150 | 300 | 0.001 | X |
5 | GO | Primary and orthology projected GO data. | 10 | 150 | 300 | 0.001 | X |
6 | GO | All GO data. | 10 | 150 | 300 | 0.001 | X |
7 | GO | Primary GO data only. | 2 | 30 | 80 | 0.001 | V |
8 | GO | Primary and orthology projected GO data. | 2 | 30 | 80 | 0.001 | V |
9 | GO | All GO data. | 2 | 30 | 80 | 0.001 | V |
10 | GO | Primary GO data only. | 10 | 150 | 300 | 0.001 | V |
11 | GO | Primary and orthology projected GO data. | 10 | 150 | 300 | 0.001 | V |
12 | GO | All GO data. | 10 | 150 | 300 | 0.001 | V |
13 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | X |
14 | InterPro | No filter applied. | 10 | 150 | 300 | 0.001 | X |
15 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | V |
16 | InterPro | No filter applied. | 10 | 150 | 300 | 0.001 | V |
17 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | X |
18 | MapMan | No filter applied. | 10 | 150 | 300 | 0.001 | X |
19 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | V |
20 | MapMan | No filter applied. | 10 | 150 | 300 | 0.001 | V |