PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Type: Mapman term
Identifier: 27.3.3
Description: RNA.regulation of transcription.AP2/EREBP, APETALA2/Ethylene-responsive element binding protein family

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis lyrata	scaffold_8	17	CH_aly_105	3	3	0.000679075
Citrus sinensis	scaffold00001	17	CH_csi_141	4	5	0.0000416228
Eucalyptus grandis	scaffold_1	17	CH_egr_42	14	16	4.68589e-28
Eucalyptus grandis	scaffold_7	17	CH_egr_193	8	10	0.000000000000074289
Eucalyptus grandis	scaffold_1	18	CH_egr_43	14	16	4.68589e-28
Oryza sativa ssp. japonica	3	17	CH_osa_247	4	5	0.0000088522
Oryza sativa ssp. japonica	6	17	CH_osa_369	4	9	0.000221401
Oryza sativa ssp. japonica	9	17	CH_osa_419	3	3	0.000755534
Physcomitrella patens	scaffold_259	17	CH_ppa_58	4	8	0.000832022
Populus trichocarpa	Chr14	17	CH_ptr_359	4	5	0.0000881578
Prunus persica	scaffold_5	17	CH_ppe_28	10	10	1.44421e-20
Prunus persica	scaffold_5	18	CH_ppe_26	10	10	1.44421e-20
Ricinus communis	30174	17	CH_rco_79	5	5	0.0000000112373
Ricinus communis	30190	17	CH_rco_270	3	3	0.000937679
Solanum lycopersicum	ch01	17	CH_sly_461	4	8	0.000699499
Zea mays	1	17	CH_zma_158	4	4	0.0000256958
Zea mays	7	17	CH_zma_239	4	6	0.000382353
Zea mays	1	18	CH_zma_34	11	159	0.0000262489

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V