PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis lyrata	scaffold_2	18	CH_aly_10	34	206	0.000170409
Arabidopsis lyrata	scaffold_2	20	CH_aly_5	34	206	0.0000264598
Arabidopsis thaliana	1	20	CH_ath_38	39	217	0.000302917
Capsella rubella	scaffold_2	20	CH_cru_1	40	185	0.000679599
Citrus sinensis	scaffold00167	18	CH_csi_22	11	17	0.000351346
Eucalyptus grandis	scaffold_11	18	CH_egr_257	10	16	0.000141863
Oryza sativa ssp. japonica	12	18	CH_osa_112	28	144	0.000219044
Populus trichocarpa	Chr12	17	CH_ptr_396	8	8	0.000228947
Prunus persica	scaffold_5	18	CH_ppe_90	44	205	0.00000453908

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V