Functional clusters
Information
- Type
- Mapman term
- Identifier
- 23.2
- Description
- nucleotide metabolism.degradation
Cluster overview
Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
---|---|---|---|---|---|---|
Arabidopsis lyrata | scaffold_8 | 17 | CH_aly_56 | 3 | 3 | 0.0000357823 |
Arabidopsis thaliana | 1 | 17 | CH_ath_304 | 3 | 3 | 0.0000806688 |
Arabidopsis thaliana | 5 | 17 | CH_ath_357 | 3 | 4 | 0.000322356 |
Arabidopsis thaliana | 5 | 17 | CH_ath_305 | 3 | 3 | 0.0000806688 |
Brassica rapa | A06 | 17 | CH_bra_190 | 3 | 3 | 0.0000727433 |
Capsella rubella | scaffold_8 | 17 | CH_cru_234 | 3 | 3 | 0.0000737173 |
Glycine max | Gm16 | 17 | CH_gma_223 | 4 | 5 | 0.00000127165 |
Oryza sativa ssp. japonica | 11 | 17 | CH_osa_412 | 3 | 7 | 0.000664974 |
Populus trichocarpa | Chr19 | 17 | CH_ptr_349 | 3 | 3 | 0.0000531739 |
Solanum lycopersicum | ch01 | 17 | CH_sly_178 | 4 | 4 | 0.000000155158 |
Solanum lycopersicum | ch02 | 17 | CH_sly_108 | 5 | 6 | 0.00000000128539 |
Functional clusters experiments
Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
---|---|---|---|---|---|---|---|
1 | GO | Primary GO data only. | 2 | 30 | 80 | 0.001 | X |
2 | GO | Primary and orthology projected GO data. | 2 | 30 | 80 | 0.001 | X |
3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | X |
4 | GO | Primary GO data only. | 10 | 150 | 300 | 0.001 | X |
5 | GO | Primary and orthology projected GO data. | 10 | 150 | 300 | 0.001 | X |
6 | GO | All GO data. | 10 | 150 | 300 | 0.001 | X |
7 | GO | Primary GO data only. | 2 | 30 | 80 | 0.001 | V |
8 | GO | Primary and orthology projected GO data. | 2 | 30 | 80 | 0.001 | V |
9 | GO | All GO data. | 2 | 30 | 80 | 0.001 | V |
10 | GO | Primary GO data only. | 10 | 150 | 300 | 0.001 | V |
11 | GO | Primary and orthology projected GO data. | 10 | 150 | 300 | 0.001 | V |
12 | GO | All GO data. | 10 | 150 | 300 | 0.001 | V |
13 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | X |
14 | InterPro | No filter applied. | 10 | 150 | 300 | 0.001 | X |
15 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | V |
16 | InterPro | No filter applied. | 10 | 150 | 300 | 0.001 | V |
17 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | X |
18 | MapMan | No filter applied. | 10 | 150 | 300 | 0.001 | X |
19 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | V |
20 | MapMan | No filter applied. | 10 | 150 | 300 | 0.001 | V |