PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Eucalyptus grandis	scaffold_10	18	CH_egr_271	10	42	0.000559868
Eucalyptus grandis	scaffold_3	18	CH_egr_218	14	61	0.00000128214
Eucalyptus grandis	scaffold_3	18	CH_egr_240	10	31	0.0000209186
Eucalyptus grandis	scaffold_6	18	CH_egr_158	11	16	0.0000000000600148
Eucalyptus grandis	scaffold_7	18	CH_egr_236	24	238	0.0000173229
Glycine max	Gm06	18	CH_gma_61	10	22	0.00000108118
Gossypium raimondii	Chr07	18	CH_gra_53	12	27	0.0000000120695
Malus domestica	10	18	CH_mdo_37	10	63	0.000667382
Oryza sativa ssp. japonica	4	17	CH_osa_257	11	66	0.0000120948
Oryza sativa ssp. japonica	4	18	CH_osa_89	11	66	0.0000120948
Oryza sativa ssp. japonica	6	18	CH_osa_49	22	235	0.00000000289583
Solanum lycopersicum	ch06	17	CH_sly_330	7	11	0.0000639814
Solanum lycopersicum	ch06	17	CH_sly_185	7	7	0.000000211745
Vitis vinifera	chr18	18	CH_vvi_70	13	42	0.0000000895533

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V