PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Type: Mapman term
Identifier: 16.2.1.6
Description: secondary metabolism.phenylpropanoids.lignin biosynthesis.CCoAOMT

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis lyrata	scaffold_2	17	CH_aly_99	2	2	0.000631373
Arabidopsis lyrata	scaffold_5	17	CH_aly_100	2	2	0.000631373
Arabidopsis thaliana	1	19	CH_ath_92	2	2	0.000892804
Citrus sinensis	scaffold00069	17	CH_csi_84	3	3	0.00000114538
Eucalyptus grandis	scaffold_3	17	CH_egr_780	3	8	0.000328485
Eucalyptus grandis	scaffold_3	17	CH_egr_359	5	15	0.00000000410967
Eucalyptus grandis	scaffold_3	17	CH_egr_651	3	4	0.0000235011
Eucalyptus grandis	scaffold_8	17	CH_egr_267	5	8	0.0000000000768499
Oryza sativa ssp. japonica	8	17	CH_osa_134	3	3	0.0000000385394
Ricinus communis	30115	17	CH_rco_116	3	3	0.00000081004
Solanum lycopersicum	ch02	17	CH_sly_149	4	5	0.0000000304351
Solanum lycopersicum	ch05	17	CH_sly_21	11	69	6.98096e-20
Solanum lycopersicum	ch05	18	CH_sly_13	14	187	6.78548e-22
Vitis vinifera	chr1	17	CH_vvi_251	3	4	0.00000572641
Vitis vinifera	chr11	17	CH_vvi_114	4	4	0.000000000435717
Zea mays	4	17	CH_zma_274	2	2	0.000754375

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V