PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Citrus sinensis	scaffold00052	17	CH_csi_161	2	2	0.000116768
Glycine max	Gm08	17	CH_gma_462	2	2	0.000556308
Glycine max	Gm15	17	CH_gma_461	2	2	0.000556308
Gossypium raimondii	Chr02	17	CH_gra_279	2	2	0.000160832
Malus domestica	5	17	CH_mdo_109	3	6	0.0000012781
Manihot esculenta	scaffold02477	17	CH_mes_223	2	2	0.000573121
Manihot esculenta	scaffold03115	17	CH_mes_222	2	2	0.000573121
Populus trichocarpa	Chr08	17	CH_ptr_474	2	2	0.000749719
Populus trichocarpa	Chr10	17	CH_ptr_473	2	2	0.000749719
Prunus persica	scaffold_4	17	CH_ppe_373	2	2	0.000216255
Ricinus communis	30169	17	CH_rco_247	2	2	0.000589188
Solanum lycopersicum	ch07	17	CH_sly_410	2	2	0.000345552
Vitis vinifera	chr19	17	CH_vvi_368	2	2	0.000228189

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V