PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Amborella trichopoda	scaffold00035	13	CH_atr_382	5	23	0.000198984
Amborella trichopoda	scaffold00038	13	CH_atr_315	4	7	0.0000734273
Arabidopsis thaliana	3	13	CH_ath_162	7	32	0.0000000166358
Capsella rubella	scaffold_5	13	CH_cru_87	11	68	0.00000000000366549
Capsella rubella	scaffold_5	14	CH_cru_28	13	93	0.0000000000000552058
Citrullus lanatus	Chr8	13	CH_cla_404	3	3	0.000410988
Gossypium raimondii	Chr10	13	CH_gra_68	10	21	3.68504e-16
Gossypium raimondii	Chr10	14	CH_gra_46	10	21	3.68504e-16
Malus domestica	13	13	CH_mdo_108	5	6	0.0000000312888
Malus domestica	8	13	CH_mdo_284	4	6	0.0000304707
Malus domestica	9	13	CH_mdo_122	5	6	0.000000109277
Medicago truncatula	chr4	13	CH_mtr_462	6	14	0.000000092443
Medicago truncatula	chr7	13	CH_mtr_238	7	10	0.0000000000102635
Medicago truncatula	chr7	13	CH_mtr_35	16	30	8.3233e-29
Medicago truncatula	chr7	14	CH_mtr_35	16	30	8.3233e-29
Medicago truncatula	chr7	15	CH_mtr_11	4	10	0.0000737387
Oryza sativa ssp. japonica	10	13	CH_osa_112	10	36	0.000000000000360608
Oryza sativa ssp. japonica	10	14	CH_osa_72	10	36	0.000000000000360608
Populus trichocarpa	Chr01	13	CH_ptr_378	5	7	0.000000741144
Ricinus communis	30170	13	CH_rco_189	5	8	0.000000991454
Solanum lycopersicum	ch10	13	CH_sly_366	4	4	0.00000351927
Vitis vinifera	chr7	13	CH_vvi_340	4	4	0.00000182077

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V