PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis lyrata	scaffold_5	14	CH_aly_40	30	290	0.00000150568
Capsella rubella	scaffold_5	14	CH_cru_37	26	142	0.00000000662836
Eucalyptus grandis	scaffold_5	13	CH_egr_834	12	23	0.0000048645
Eucalyptus grandis	scaffold_11	14	CH_egr_247	43	297	0.00000632622
Eucalyptus grandis	scaffold_5	14	CH_egr_245	12	23	0.0000048645
Manihot esculenta	scaffold09809	13	CH_mes_211	8	13	0.0000209546
Manihot esculenta	scaffold11897	13	CH_mes_69	9	10	0.0000000056333
Populus trichocarpa	Chr05	14	CH_ptr_111	10	29	0.000719713
Solanum lycopersicum	ch04	13	CH_sly_703	7	14	0.000478838
Solanum lycopersicum	ch06	13	CH_sly_474	6	7	0.000046306
Theobroma cacao	scaffold_7	13	CH_tca_121	21	75	0.0000000000347223
Vitis vinifera	chr10	14	CH_vvi_81	12	42	0.0000069827

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V