PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Capsella rubella	scaffold_3	13	CH_cru_540	2	2	0.000763242
Capsella rubella	scaffold_3	15	CH_cru_9	2	2	0.000763242
Citrus sinensis	scaffold00004	13	CH_csi_303	2	2	0.000347443
Eucalyptus grandis	scaffold_4	13	CH_egr_574	4	7	0.0000000149642
Fragaria vesca	LG2	13	CH_fve_685	2	2	0.000898177
Gossypium raimondii	Chr09	13	CH_gra_445	3	13	0.000146715
Medicago truncatula	chr5	13	CH_mtr_79	7	8	2.52474e-19
Oryza sativa ssp. japonica	10	13	CH_osa_408	4	11	0.00000207939
Oryza sativa ssp. japonica	11	13	CH_osa_127	6	12	0.00000000000161322
Solanum tuberosum	chr12	13	CH_stu_28	10	10	3.56968e-31
Solanum tuberosum	chr12	14	CH_stu_30	10	10	3.56968e-31
Theobroma cacao	scaffold_5	13	CH_tca_274	3	3	0.000000390385
Vitis vinifera	chr16	13	CH_vvi_2	20	22	1.10714e-58
Vitis vinifera	chr16	14	CH_vvi_2	20	22	1.10714e-58
Zea mays	3	13	CH_zma_352	3	8	0.000096549
Zea mays	4	13	CH_zma_240	3	4	0.0000069033

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V